Rroxscaffold_1G00018430
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
22623057 .. 22624709
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018430.1

Sequence Viewer

Length: 1653 bp
ATGATGGGTTATAGAAAATTTGATCTGTGCATCTGGGTTTTGTCAATCTTGAGTTTGGGTTGCTTCTGTAGTGGGTTTACTCCTGTAGACAACTACTTGATAGATTGTGGTTCACTGGCCAATACTTCAGTGGGTAACCGTGTTTATCTAGCTGATAAGTTGGCTTCAAAATTCCTTTCAACCCCAAAAGATGTTCTTGCCAATAGTCCATTGAAATCAATCACTTCCTTTGATGATTCTCCGCTGTATCAAACAGCTAGAATCTTTACTGGGTCTTCAAAATACACTTTTTCAATAAGCCCGAGTAGTAGGCACTGGATCCGCCTCTATTTCTATCCATTTGTTTCGGGTAGTTATGATCTGAGCAAGGCCAAATTCTCTGTTTCCACCCAAAACTATGGCCTGCTTAGTGATTTCAGTGTTCAGAACTCTTCTGTGATGAAAGAGTTTTCGGTGAATGTGACTTCGGGTAGCCTTGTTGTCACTTTCACCCCTTCTAGTGGTTCATTTGCATTCTTGAATGCCATTGAAGTTGTTTCAGTCCCCGACGAACTCATTACCGATGATGCCACCACCACTCCTGGTAAATTCCAGGGTTTGATGAGTCAGGCTCTGGAGACAACTTGGAGGGTGAATATGGGTGGACCATTGGTGTCTTTCGAGAATGATACCCTGTGGCGAACTTGGGTTCCTGATCAAGATTATCTAGTGAGCAAGAACTTGGCCAAAGATGTCTCAAATGTTGCAGCTGTTGAATATGCTGATGGTTTGGCAACTGCAGATAGTGCTCCCAGAACGGTTTACGGTACTCTCACAGAGATGAACTCAGCTGGTGATCCCAACACCAATTACAATGTGACCTGGGAGTTCAAAGTGGATTCAGGATTTCAATACCTTCTTCGCTTTCACTTTTGCGACATAGTAAGTAAAGGTCTAAATCAGCTTTACTTCAATGTGTATTTTGACTCTTGGATTGTTGCTCCAGATCTTGATCTGAGTACTTTAGCATTTAACACGTTAGCTGCACCATATTACTTGGATTATGTTACAACATCAGTTGTCAGCGATACAATTCGTATTAGTATTGGTCCTTCCTCTGTGAATAATGCTTATCCCAATGCCATTCTAAATGGGCTTGAGATTATGAAAATGAACAACTCAGATGGTCACCTTGGTGGAGGAAGCGGTGCAGTTACTTCAAATTCAAGTTCAAAAAGTAATGTCGGAGTTATAGTGGGTGCCACTGTTGGATCGCTTATTGCAGTGGTGTTGGCTGCTATTCTCTTTATTCTGTGCAGAAGAAGGAAGGATAAGGCAAATCAGGGTCATTCTAAGACTTGGGCTCCTTTCTCCATGAATGGAACCAATTCTCACACCATGGGAAGCAAGTACTCATATGGAACAACTGCTAGTGCTGCTTCAAACTACCAGTATCGCTTTCCTTTTGGGGTAGTTCAAGAGGCTACAAACAACTTTGACGAGAGTTGGGTTATCGGAATTGGTGGTTTTGGGAAGGTTTACAAAGGAGAATTTAATGATGGAACTAAAGTAGCTGTCAAGAGGGAAACCCACGGTCTCAACAGGGGCTTGCAGAGTTCAGGACCGAAATTGAGATGCTTTCTCAATTCCGTCATCGCCATCTTGTGTCATTGA

Protein Analysis

550

Amino Acids

59.93

Weight (kDa)

6.66

Isoelectric Point (pI)

23.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 34 - 384 4.9e-27 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1238
AccI GTMKAC 1 cut(s) 87
AciI CCGC 3 cut(s) 242, 322, 1185
AclWI GGATC 4 cut(s) 313, 326, 830, 1258
AcoI YGGCCR 2 cut(s) 117, 723
AcsI RAATTY 6 cut(s) 17, 170, 374, 587, 1201, 1529
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 3 cut(s) 808, 1000, 1391
AfiI CCNNNNNNNGG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 1014
AjnI CCWGG 3 cut(s) 580, 591, 860
AleI CACNNNNGTG 1 cut(s) 1173
AloI GAACNNNNNNTCC 2 cut(s) 673, 705
AluBI AGCT 7 cut(s) 152, 257, 749, 830, 943, 1022, 1553
AluI AGCT 7 cut(s) 152, 257, 749, 830, 943, 1022, 1553
Alw21I GWGCWC 1 cut(s) 790
Alw26I GTCTC 3 cut(s) 611, 739, 1580
AlwI GGATC 4 cut(s) 313, 326, 830, 1258
AlwNI CAGNNNCTG 1 cut(s) 613
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 4 cut(s) 117, 369, 400, 723
ApeKI GCWGC 4 cut(s) 746, 1022, 1274, 1415
ApoI RAATTY 6 cut(s) 17, 170, 374, 587, 1201, 1529
Asp700I GAANNNNTTC 1 cut(s) 1366
AspS9I GGNCC 3 cut(s) 644, 1088, 1601
AsuHPI GGTGA 5 cut(s) 466, 481, 643, 845, 1160
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 3 cut(s) 644, 1088, 1601
BalI TGGCCA 2 cut(s) 119, 725
BamHI GGATCC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 1238
BanII GRGCYC 1 cut(s) 1345
BarI GAAGNNNNNNTAC 2 cut(s) 1075, 1107
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 790
BbvI GCAGC 4 cut(s) 758, 1009, 1261, 1402
BccI CCATC 4 cut(s) 758, 1157, 1532, 1646
BciT130I CCWGG 3 cut(s) 582, 593, 862
BclI TGATCA 1 cut(s) 694
BcoDI GTCTC 3 cut(s) 611, 739, 1580
BfaI CTAG 5 cut(s) 149, 258, 498, 707, 1410
BfmI CTRYAG 3 cut(s) 67, 84, 777
BglII AGATCT 1 cut(s) 985
BisI GCNGC 4 cut(s) 747, 1023, 1275, 1416
BlsI GCNGC 4 cut(s) 748, 1024, 1276, 1417
BmcAI AGTACT 2 cut(s) 1000, 1391
Bme1390I CCNGG 3 cut(s) 582, 593, 862
Bme18I GGWCC 3 cut(s) 644, 1088, 1601
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 644, 1088, 1601
BmiI GGNNCC 5 cut(s) 320, 690, 1240, 1344, 1363
BmrFI CCNGG 3 cut(s) 582, 593, 862
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 3 cut(s) 39, 556, 1604
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 267
BplI GAGNNNNNCTC 4 cut(s) 595, 627, 809, 841
BpmI CTGGAG 2 cut(s) 635, 966
BpuEI CTTGAG 2 cut(s) 70, 1157
BsaBI GATNNNNATC 1 cut(s) 990
BsaI GGTCTC 1 cut(s) 1580
BsaJI CCNNGG 5 cut(s) 592, 861, 1171, 1377, 1570
BsaXI ACNNNNNCTCC 6 cut(s) 562, 592, 1218, 1248, 1327, 1357
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 4 cut(s) 120, 274, 320, 1429
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 3 cut(s) 582, 593, 862
BseDI CCNNGG 5 cut(s) 592, 861, 1171, 1377, 1570
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 4 cut(s) 353, 840, 986, 1173
BseNI ACTGG 4 cut(s) 120, 274, 320, 1429
BseXI GCAGC 4 cut(s) 758, 1009, 1261, 1402
BsgI GTGCAG 3 cut(s) 1008, 1209, 1315
BshFI GGCC 4 cut(s) 119, 371, 402, 725
BshNI GGYRCC 1 cut(s) 1238
BsiHKAI GWGCWC 1 cut(s) 790
BsiHKCI CYCGRG 1 cut(s) 301
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 3 cut(s) 611, 739, 1580
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 2 cut(s) 512, 526
BsnI GGCC 4 cut(s) 119, 371, 402, 725
Bso31I GGTCTC 1 cut(s) 1580
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 2 cut(s) 790, 1345
Bsp143I GATC 8 cut(s) 22, 318, 358, 694, 835, 985, 991, 1250
Bsp19I CCATGG 1 cut(s) 1377
BspACI CCGC 3 cut(s) 242, 322, 1185
BspANI GGCC 4 cut(s) 119, 371, 402, 725
BspCNI CTCAG 4 cut(s) 354, 839, 987, 1172
BspLI GGNNCC 5 cut(s) 320, 690, 1240, 1344, 1363
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 4 cut(s) 313, 326, 830, 1258
BspT107I GGYRCC 1 cut(s) 1238
BspTNI GGTCTC 1 cut(s) 1580
BsrI ACTGG 4 cut(s) 120, 274, 320, 1429
BssECI CCNNGG 5 cut(s) 592, 861, 1171, 1377, 1570
BssMI GATC 8 cut(s) 22, 318, 358, 694, 835, 985, 991, 1250
BssT1I CCWWGG 2 cut(s) 1171, 1377
Bst2UI CCWGG 3 cut(s) 582, 593, 862
Bst4CI ACNGT 5 cut(s) 140, 799, 806, 1246, 1574
Bst6I CTCTTC 1 cut(s) 436
BstAPI GCANNNNNTGC 1 cut(s) 785
BstC8I GCNNGC 2 cut(s) 404, 1589
BstDEI CTNAG 6 cut(s) 362, 407, 826, 995, 1159, 1332
BstDSI CCRYGG 2 cut(s) 1377, 1570
BstEII GGTNACC 2 cut(s) 134, 1166
BstKTI GATC 8 cut(s) 25, 321, 361, 697, 838, 988, 994, 1253
BstMAI GTCTC 3 cut(s) 611, 739, 1580
BstMBI GATC 8 cut(s) 22, 318, 358, 694, 835, 985, 991, 1250
BstMWI GCNNNNNNNGC 2 cut(s) 785, 1415
BstNI CCWGG 3 cut(s) 582, 593, 862
BstPI GGTNACC 2 cut(s) 134, 1166
BstSCI CCNGG 3 cut(s) 580, 591, 860
BstSFI CTRYAG 3 cut(s) 67, 84, 777
BstV1I GCAGC 4 cut(s) 758, 1009, 1261, 1402
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 2 cut(s) 318, 985
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 2 cut(s) 318, 985
BsuRI GGCC 4 cut(s) 119, 371, 402, 725
BtgI CCRYGG 2 cut(s) 1377, 1570
BtgZI GCGATG 1 cut(s) 1618
BtsI GCAGTG 1 cut(s) 1269
BtsIMutI CAGTG 6 cut(s) 113, 135, 313, 424, 1242, 1269
Cac8I GCNNGC 2 cut(s) 404, 1589
CaiI CAGNNNCTG 1 cut(s) 613
Cfr13I GGNCC 3 cut(s) 644, 1088, 1601
Csp6I GTAC 3 cut(s) 807, 999, 1390
CviAII CATG 2 cut(s) 1354, 1378
CviQI GTAC 3 cut(s) 807, 999, 1390
DdeI CTNAG 6 cut(s) 362, 407, 826, 995, 1159, 1332
DpnI GATC 8 cut(s) 24, 320, 360, 696, 837, 987, 993, 1252
DpnII GATC 8 cut(s) 22, 318, 358, 694, 835, 985, 991, 1250
EaeI YGGCCR 2 cut(s) 117, 723
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
EciI GGCGGA 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 1171, 1377
Eco24I GRGCYC 1 cut(s) 1345
Eco31I GGTCTC 1 cut(s) 1580
Eco47I GGWCC 3 cut(s) 644, 1088, 1601
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 301
Eco91I GGTNACC 2 cut(s) 134, 1166
EcoO65I GGTNACC 2 cut(s) 134, 1166
EcoRII CCWGG 3 cut(s) 580, 591, 860
EcoT14I CCWWGG 2 cut(s) 1171, 1377
EcoT38I GRGCYC 1 cut(s) 1345
ErhI CCWWGG 2 cut(s) 1171, 1377
FaeI CATG 2 cut(s) 1357, 1381
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 1 cut(s) 527
FatI CATG 2 cut(s) 1353, 1377
FauNDI CATATG 1 cut(s) 1396
FbaI TGATCA 1 cut(s) 694
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 4 cut(s) 747, 1023, 1275, 1416
FriOI GRGCYC 1 cut(s) 1345
Fsp4HI GCNGC 4 cut(s) 747, 1023, 1275, 1416
FspBI CTAG 5 cut(s) 149, 258, 498, 707, 1410
GluI GCNGC 4 cut(s) 747, 1023, 1275, 1416
GsuI CTGGAG 2 cut(s) 635, 966
HaeIII GGCC 4 cut(s) 119, 371, 402, 725
Hin1II CATG 2 cut(s) 1357, 1381
HinfI GANTC 5 cut(s) 236, 261, 604, 878, 965
HphI GGTGA 5 cut(s) 466, 481, 643, 845, 1160
Hpy166II GTNNAC 6 cut(s) 78, 88, 113, 644, 802, 1519
Hpy188I TCNGA 6 cut(s) 363, 426, 996, 1162, 1226, 1496
Hpy8I GTNNAC 6 cut(s) 78, 88, 113, 644, 802, 1519
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 6 cut(s) 504, 905, 1101, 1296, 1300, 1507
HpyCH4III ACNGT 5 cut(s) 140, 799, 806, 1246, 1574
HpyCH4IV ACGT 1 cut(s) 1016
HpyCH4V TGCA 9 cut(s) 30, 512, 746, 779, 1025, 1190, 1262, 1296, 1591
HpyF10VI GCNNNNNNNGC 2 cut(s) 785, 1415
HpyF3I CTNAG 6 cut(s) 362, 407, 826, 995, 1159, 1332
HpySE526I ACGT 1 cut(s) 1016
Hsp92II CATG 2 cut(s) 1357, 1381
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 8 cut(s) 22, 318, 358, 694, 835, 985, 991, 1250
LmnI GCTCC 3 cut(s) 793, 985, 1348
Lsp1109I GCAGC 4 cut(s) 758, 1009, 1261, 1402
LweI GCATC 3 cut(s) 39, 556, 1604
MaeI CTAG 5 cut(s) 149, 258, 498, 707, 1410
MaeII ACGT 1 cut(s) 1016
MaeIII GTNAC 7 cut(s) 134, 460, 481, 856, 1045, 1166, 1192
MalI GATC 8 cut(s) 24, 320, 360, 696, 837, 987, 993, 1252
MboI GATC 8 cut(s) 22, 318, 358, 694, 835, 985, 991, 1250
MboII GAAGA 4 cut(s) 267, 423, 890, 1311
MflI RGATCY 2 cut(s) 318, 985
MhlI GDGCHC 2 cut(s) 790, 1345
MlsI TGGCCA 2 cut(s) 119, 725
MluNI TGGCCA 2 cut(s) 119, 725
MlyI GAGTC 2 cut(s) 613, 959
MmeI TCCRAC 2 cut(s) 1204, 1228
MnlI CCTC 6 cut(s) 335, 621, 1105, 1172, 1453, 1554
Mox20I TGGCCA 2 cut(s) 119, 725
MroXI GAANNNNTTC 1 cut(s) 1366
MscI TGGCCA 2 cut(s) 119, 725
MseI TTAA 2 cut(s) 1011, 1533
MslI CAYNNNNRTG 2 cut(s) 818, 1173
Msp20I TGGCCA 2 cut(s) 119, 725
MspA1I CMGCKG 3 cut(s) 244, 749, 830
MspR9I CCNGG 3 cut(s) 582, 593, 862
Mva1269I GAATGC 2 cut(s) 512, 526
MvaI CCWGG 3 cut(s) 582, 593, 862
MwoI GCNNNNNNNGC 2 cut(s) 785, 1415
NcoI CCATGG 1 cut(s) 1377
NdeI CATATG 1 cut(s) 1396
NdeII GATC 8 cut(s) 22, 318, 358, 694, 835, 985, 991, 1250
NlaIII CATG 2 cut(s) 1357, 1381
NlaIV GGNNCC 5 cut(s) 320, 690, 1240, 1344, 1363
NmuCI GTSAC 4 cut(s) 460, 481, 856, 1166
OliI CACNNNNGTG 1 cut(s) 1173
PctI GAATGC 2 cut(s) 512, 526
PdmI GAANNNNTTC 1 cut(s) 1366
PfeI GAWTC 3 cut(s) 236, 261, 878
PkrI GCNGC 4 cut(s) 748, 1024, 1276, 1417
PleI GAGTC 2 cut(s) 612, 959
PpsI GAGTC 2 cut(s) 612, 959
Psp6I CCWGG 3 cut(s) 580, 591, 860
PspEI GGTNACC 2 cut(s) 134, 1166
PspGI CCWGG 3 cut(s) 580, 591, 860
PspN4I GGNNCC 5 cut(s) 320, 690, 1240, 1344, 1363
PspPI GGNCC 3 cut(s) 644, 1088, 1601
PstI CTGCAG 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 613
PsuI RGATCY 2 cut(s) 318, 985
PvuII CAGCTG 2 cut(s) 749, 830
RsaI GTAC 3 cut(s) 808, 1000, 1391
RsaNI GTAC 3 cut(s) 807, 999, 1390
RseI CAYNNNNRTG 2 cut(s) 818, 1173
SaqAI TTAA 2 cut(s) 1011, 1533
SatI GCNGC 4 cut(s) 747, 1023, 1275, 1416
Sau3AI GATC 8 cut(s) 22, 318, 358, 694, 835, 985, 991, 1250
Sau96I GGNCC 3 cut(s) 644, 1088, 1601
ScaI AGTACT 2 cut(s) 1000, 1391
SchI GAGTC 2 cut(s) 613, 959
ScrFI CCNGG 3 cut(s) 582, 593, 862
SduI GDGCHC 2 cut(s) 790, 1345
SfaNI GCATC 3 cut(s) 39, 556, 1604
SfcI CTRYAG 3 cut(s) 67, 84, 777
SinI GGWCC 3 cut(s) 644, 1088, 1601
SmiMI CAYNNNNRTG 2 cut(s) 818, 1173
SmlI CTYRAG 2 cut(s) 49, 1136
SmoI CTYRAG 2 cut(s) 49, 1136
SsiI CCGC 3 cut(s) 242, 322, 1185
SspMI CTAG 5 cut(s) 149, 258, 498, 707, 1410
StyD4I CCNGG 3 cut(s) 580, 591, 860
StyI CCWWGG 2 cut(s) 1171, 1377
TaaI ACNGT 5 cut(s) 140, 799, 806, 1246, 1574
TaiI ACGT 1 cut(s) 1019
TaqI TCGA 1 cut(s) 660
TaqII GACCGA 1 cut(s) 1618
TatI WGTACW 2 cut(s) 998, 1389
TfiI GAWTC 3 cut(s) 236, 261, 878
Tru1I TTAA 2 cut(s) 1011, 1533
Tru9I TTAA 2 cut(s) 1011, 1533
TscAI CASTG 6 cut(s) 120, 135, 320, 424, 1249, 1269
TseFI GTSAC 4 cut(s) 460, 481, 856, 1166
TseI GCWGC 4 cut(s) 746, 1022, 1274, 1415
Tsp45I GTSAC 4 cut(s) 460, 481, 856, 1166
TspDTI ATGAA 6 cut(s) 455, 495, 836, 1160, 1166, 1370
TspGWI ACGGA 1 cut(s) 1618
TspRI CASTG 6 cut(s) 120, 135, 320, 424, 1249, 1269
VpaK11BI GGWCC 3 cut(s) 644, 1088, 1601
XapI RAATTY 6 cut(s) 17, 170, 374, 587, 1201, 1529
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 1366
XspI CTAG 5 cut(s) 149, 258, 498, 707, 1410
ZrmI AGTACT 2 cut(s) 1000, 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.