Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009926

Physical Location & Seq

Genomic Coordinates Forward (+)

42967450 .. 42968713

Gene Structure 1264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0347400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAAATAGACTGCAAGGCAATGTTGCATGTCAAAAGAAGGCAAGATGGGAAATGGGTTGTTCAAAATTTTGTGAAAGAGCATAATCATGAACTTTCTCCGGAGGATGTCCACTACTTTCCATGTTATAGAAACATTGCTTCTGGTGATTTGAACAATATTAGTACTTTGCATTCAGTTGGAGTGAAACTAAGTAAGATTTTTGCTGCATTAGCCAAACAGTGTGGAGGATATCAGAACATTGGTTTTTTAGAAAAAGAAATAAGAAATTTTTTAGATAAGAAACGTCGGTTAGAATTGGAATCTGGCGATGCTAAGGTAAACAAGAAAACTTCATTGAAGAAGTTTGTTGAACAATACAAAGAAGCTGCTCAAGATAGATTGGAAGTGGAAGTGGAAGTTCAGGCCGATTTCAATAATTCGCATAAGTTTCCTAGTTTAAAGTCTTCATCACCTTTCGGGTATCAAATGTCAAAGATCTACACACTTGAGATTTTTAAGAGGTTTGAAGAAGAGGTTTTGGGAATTTCAGCATGCAATCCTATAAAACAAAAGGAGGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

188

Amino Acids

21.71

Weight (kDa)

8.92

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	2 - 33	2.6e-11	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46290 AT5G59700
fragaria_vesca	FvH4_3g34580
malus_domestica	MD03G1103600.v1.1 MD11G1117300.v1.1
prunus_persica	Prupe.6G087700_v2.0.a1 Prupe.6G087700_v2.0.a1 Prupe.6G087900_v2.0.a1
pyrus_communis	pycom03g08440 pycom11g09850
rosa_chinensis	RchiOBHm_Chr5g0062291
rosa_laevigata	RLG00000035547
rosa_multiflora	Rmu_ssc0000409.1_g000029
rosa_roxburghii	Rroxscaffold_1G00018430 Rroxscaffold_1G00018440
rosa_rugosa	Rorug05G0347400
rosa_samantha	Rh5AG408100 Rh5BG421900 Rh5CG445900 Rh5DG436900
rosa_wichuraiana	Rw5G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	100
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	3 cut(s)	67, 268, 525
AfaI	GTAC	1 cut(s)	166
AgsI	TTSAA	6 cut(s)	65, 154, 340, 353, 415, 509
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
AlwI	GGATC	1 cut(s)	554
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	206, 368
ApoI	RAATTY	3 cut(s)	67, 268, 525
AsuHPI	GGTGA	2 cut(s)	158, 444
BamHI	GGATCC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	193, 355
BccI	CCATC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	435
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	2 cut(s)	207, 369
BlsI	GCNGC	2 cut(s)	208, 370
BmcAI	AGTACT	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	561
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	2 cut(s)	357, 509
BsaWI	WCCGGW	1 cut(s)	100
Bse3DI	GCAATG	2 cut(s)	27, 135
BseAI	TCCGGA	1 cut(s)	100
BseGI	GGATG	1 cut(s)	112
BseMI	GCAATG	2 cut(s)	27, 135
BseXI	GCAGC	2 cut(s)	193, 355
BshFI	GGCC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	407
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	477, 559
BspANI	GGCC	1 cut(s)	407
BspEI	TCCGGA	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	27, 135
BssMI	GATC	2 cut(s)	477, 559
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	2 cut(s)	191, 315
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	480, 562
BstMBI	GATC	2 cut(s)	477, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	2 cut(s)	32, 537
BstV1I	GCAGC	2 cut(s)	193, 355
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	477, 559
BstYI	RGATCY	2 cut(s)	477, 559
BsuRI	GGCC	1 cut(s)	407
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	165
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	5 cut(s)	29, 89, 123, 534, 564
CviJI	RGCY	3 cut(s)	215, 368, 407
CviKI_1	RGCY	3 cut(s)	215, 368, 407
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	191, 315
DpnI	GATC	2 cut(s)	479, 561
DpnII	GATC	2 cut(s)	477, 559
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	233
FaeI	CATG	5 cut(s)	32, 92, 126, 537, 567
FaiI	YATR	9 cut(s)	30, 84, 90, 124, 129, 426, 535, 545, 565
FatI	CATG	5 cut(s)	28, 88, 122, 533, 563
Fnu4HI	GCNGC	2 cut(s)	207, 369
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	207, 369
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	2 cut(s)	207, 369
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	5 cut(s)	32, 92, 126, 537, 567
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	158, 444
Hpy166II	GTNNAC	2 cut(s)	112, 322
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	3 cut(s)	89, 101, 374
Hpy8I	GTNNAC	2 cut(s)	112, 322
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	5 cut(s)	15, 28, 172, 209, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	191, 315
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	5 cut(s)	32, 92, 126, 537, 567
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	477, 559
LpnPI	CCDG	4 cut(s)	114, 129, 291, 389
Lsp1109I	GCAGC	2 cut(s)	193, 355
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	286
MalI	GATC	2 cut(s)	479, 561
MboI	GATC	2 cut(s)	477, 559
MboII	GAAGA	4 cut(s)	352, 438, 521, 524
MflI	RGATCY	2 cut(s)	477, 559
MluCI	AATT	5 cut(s)	67, 268, 296, 418, 525
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	97, 221, 495, 508, 550
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	2 cut(s)	440, 498
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	2 cut(s)	477, 559
NlaIII	CATG	5 cut(s)	32, 92, 126, 537, 567
NlaIV	GGNNCC	1 cut(s)	561
NspI	RCATGY	2 cut(s)	32, 537
PaeI	GCATGC	1 cut(s)	537
PagI	TCATGA	1 cut(s)	88
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	208, 370
PspN4I	GGNNCC	1 cut(s)	561
PsuI	RGATCY	2 cut(s)	477, 559
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	440, 498
SatI	GCNGC	2 cut(s)	207, 369
Sau3AI	GATC	2 cut(s)	477, 559
ScaI	AGTACT	1 cut(s)	166
SetI	ASST	6 cut(s)	289, 321, 370, 457, 506, 519
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	372, 488
SmoI	CTYRAG	2 cut(s)	372, 488
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	5 cut(s)	67, 268, 296, 418, 525
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	1 cut(s)	289
TasI	AATT	5 cut(s)	67, 268, 296, 418, 525
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	440, 498
Tru9I	TTAA	2 cut(s)	440, 498
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	2 cut(s)	206, 368
TspDTI	ATGAA	4 cut(s)	17, 105, 324, 438
TspRI	CASTG	1 cut(s)	227
XapI	RAATTY	3 cut(s)	67, 268, 525
XceI	RCATGY	2 cut(s)	32, 537
XspI	CTAG	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.