Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009926

Physical Location & Seq

Genomic Coordinates Reverse (-)

61887333 .. 61891127

Gene Structure 3795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG445900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGATGGGTTATAGAAAATTTGATCTGTGCATCTGGGTTTTGTCAATCTTGAGTTTGGGTTGCTTCTGTAGTGGGTTTACTCCTGTAGACAATTACTTGATAGATTGTGGTTCACTGGCCAATACTTCAGTGGGTAACCGTGTTTATGTAGCTGATAAGTTGGCTTCAAATTTCCTTTCAACCCCAAAAGATGTTCTTGCCAATAGTCCATTGAAATCAATCACTTCCTTTGATGATTCTCCGCTGTATCAAACAGCTAGAATCTTTACCGGGTCTTCAAAATACACTTTTTCAATAAGCCTGACTGGTAGGCACTGGATCCGCCTCTATTTCTATCCATTTGTTTCGGGTAGTTATGATCTGAGCAAGGCCAAATTCTCTGTTTCCACCCAAAACTATGGCCTGCTTAGTGATTTCAGTGTTCAGAACTCTTCTGTGATGAAAGAGTTTTCGGTGTATGTGACTTCGGGTAGCCTTGTTGTCACTTTCACCCCTTCTAGTGGTTCATTTGCATTCTTGAATGCCATTGAAGTTGTTTCAGTCCCCGACTCACTCATTACCGATGATGCCACCACCACCACTCCTGGTAAATTCCAGGGTTTGATGAGTCAGGCTCTGGAGACAACTTGGAGGGTGAATATGGGTGGACCATTGGTGTCTTTCGAGAATGATACCCTGTGGCGAACTTGGGTTCCTGATCAAGATTATCTAGTGAGCAAGAACTTGGCCAAAGATGTCTCAAATGTTGCAGCTGTTGAATATGGCGAAGGTTTGGCAACTGCAGATAGTGCTCCCATAACGGTTTACGGTACTCTCACAGAGATGAACTCAGCTGGTGATCCCAACACCAATTACAATGTGACCTGGGAGTTCAAAGTGGATTCAGGATTTCAATACCTTCTTCGCTTTCACTTTTGCGACATAGTAAGTAAAGGTCTAAATCAGCTTTACTTCAATGTGTATTTTGACTCTTGGATTGTTGCTCAAGATCTTGATCTGAGTACTATAGCAGTTAACAAGTTAGCTACACCATATTACTTGGATTATGTTACAACATCAGTTGTCAGCGATACAATTCGTATCAGTATTGGTCCTTCCTCTCTGAATAATGCTTATCCCAATGCCATTCTAAATGGGCTTGAGATTATGAAAATGAACAACTCAGATGGCCACCTCGATGGAGCAAGCGGTGCGGTTACTTCAAATTCAAGTTCAAAAAGTAATGTCGGAGTTATAGTGGGTGCCACTGTTGGATCGCTTATTGCAGTGGTGTTGGCTGCTATTCTCTTTATTCTGTGCAGAAGAAGGAAGGATAAGGCAAATCAGGGTCATTCTAAGACATGGGCTCCTTTCTCCATGAATGGAACCAATTCTCACACCATGGGAAGCAAGTACTCATATGGAACAACTGCTAGTGCTGCTTCAAACTACCAGTATCGCTTTCCTTTTGGGGTAGTTCAAGAGGCTACAAACAACTTTGACGAGAGTTGGGTTATCGGAATTGGTGGTTTTGGGAAGGTTTACAAAGGAGAATTTAATGATGGAACTAAAGTAGCTGTCAAGAGGGGAAACCCACGGTCTCAACAGGGGCTTGCAGAGTTCAGGACCGAAATTGAGATGCTTTCTCAATTCCGTCATCGCCATCTTGTGTCATTGATTGGGTATTGTGATGACAAGAGTGAGATGATTCTGATATACGAATATATGGAGAATGGGACCTTGAAGAGTCATCTCTATGGCTCTGGTCTACCCAGCTTAAGCTGGAAGGCAAGGCTTGAAATATGCATTGGATCAGCTAGAGGACTTCACTACCTTCACACTGGTGATGCAAAAGCAGTTATTCATCGCGATGTGAAGTCTGCGAATATCTTGCTTGATGAGAACCTCATGGCCAAGGTTGCTGATTTTGGGCTTTCCAAGACTGGTCCAGAACTTGATCAGACCCATGTGAGTACTGCAGTGAAAGGGAGTTTCGGATACCTTGACCCTGAATATTTTAGAAGGCAACAACTGACAGAGAAATCAGATGTGTATTCATTCGGGGTGGTTTTGTTTGAGGTTCTTTGTGCAAGACCTGTCATAGATCCATCCCTGCCAAGGGAAATGGTGAACTTGGCAGAGTGGGCGATGAAATGGCAGAAGAAGGGGCAGTTGGAGCAAATCATAGATCCTACACTAGCGGGAAAAATACGACCAGATTCTCTCAGAAAATTTGCAGAAACCGCGGAGAAATGCTTGGCTGACTATGGTGTTGACAGGCCCTCAATGGGAGATGTCTTGTGGAATCTGGAGTATGCCCTTCAACTTCAAGAGGCAGTAATTCAAGATCCTGAAGACAACAGTACCAATATGATCGGCGAGCTATCTCCACAAGTCAACAATTTCAATCACATTGACACAACTGGTTCTCCCGGACAGTTTGAAGTCTCTAGTGTGGATGATCTTTCAGGTGTTTCCATGAGTAGAGTATTCTCACAGCTGGTAAAGTCTGAGGGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

833

Amino Acids

91.76

Weight (kDa)

5.46

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	34 - 384	5e-26	Malectin-like domain
PK_Tyr_Ser-Thr	PF07714	498 - 692	8.8e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	498 - 756	2.6e-42	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46290 AT5G59700
fragaria_vesca	FvH4_3g34580
malus_domestica	MD03G1103600.v1.1 MD11G1117300.v1.1
prunus_persica	Prupe.6G087700_v2.0.a1 Prupe.6G087700_v2.0.a1 Prupe.6G087900_v2.0.a1
pyrus_communis	pycom03g08440 pycom11g09850
rosa_chinensis	RchiOBHm_Chr5g0062291
rosa_laevigata	RLG00000035547
rosa_multiflora	Rmu_ssc0000409.1_g000029
rosa_roxburghii	Rroxscaffold_1G00018430 Rroxscaffold_1G00018440
rosa_rugosa	Rorug05G0347400
rosa_samantha	Rh5AG408100 Rh5BG421900 Rh5CG445900 Rh5DG436900
rosa_wichuraiana	Rw5G038460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1241
AccI	GTMKAC	2 cut(s)	87, 1747
AccII	CGCG	2 cut(s)	1848, 2225
AciI	CCGC	7 cut(s)	242, 322, 1188, 1193, 2180, 2223, 2225
AclWI	GGATC	8 cut(s)	313, 326, 833, 1261, 1798, 2078, 2162, 2321
AcoI	YGGCCR	4 cut(s)	117, 726, 1168, 1890
AcsI	RAATTY	7 cut(s)	17, 169, 374, 590, 1204, 1532, 2210
AcuI	CTGAAG	2 cut(s)	111, 2352
AfaI	GTAC	5 cut(s)	811, 1003, 1394, 1954, 2344
AfiI	CCNNNNNNNGG	4 cut(s)	500, 2097, 2098, 2267
AflII	CTTAAG	1 cut(s)	1756
AjnI	CCWGG	3 cut(s)	583, 594, 863
AjuI	GAANNNNNNNTTGG	4 cut(s)	1770, 1802, 2135, 2167
AleI	CACNNNNGTG	1 cut(s)	1821
AloI	GAACNNNNNNTCC	2 cut(s)	676, 708
Alw21I	GWGCWC	1 cut(s)	793
Alw26I	GTCTC	4 cut(s)	614, 742, 1584, 2431
AlwI	GGATC	8 cut(s)	313, 326, 833, 1261, 1798, 2078, 2162, 2321
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	7 cut(s)	117, 369, 400, 726, 1168, 1890, 2258
ApeKI	GCWGC	3 cut(s)	749, 1277, 1418
ApoI	RAATTY	7 cut(s)	17, 169, 374, 590, 1204, 1532, 2210
Asp700I	GAANNNNTTC	1 cut(s)	1369
AspS9I	GGNCC	6 cut(s)	647, 1091, 1605, 1716, 1925, 2259
AsuC2I	CCSGG	2 cut(s)	271, 2412
AsuHPI	GGTGA	5 cut(s)	481, 646, 848, 1835, 2119
AvaII	GGWCC	5 cut(s)	647, 1091, 1605, 1716, 1925
BaeI	ACNNNNGTAYC	2 cut(s)	2326, 2359
BalI	TGGCCA	4 cut(s)	119, 728, 1170, 1892
BamHI	GGATCC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	1241
BanII	GRGCYC	1 cut(s)	1348
BarI	GAAGNNNNNNTAC	2 cut(s)	1078, 1110
BbsI	GAAGAC	2 cut(s)	267, 2340
Bbv12I	GWGCWC	1 cut(s)	793
BbvI	GCAGC	3 cut(s)	761, 1264, 1405
BccI	CCATC	5 cut(s)	1160, 1172, 1535, 1650, 2095
BcgI	CGANNNNNNTGC	2 cut(s)	1852, 1886
BciT130I	CCWGG	3 cut(s)	585, 596, 865
BciVI	GTATCC	1 cut(s)	1970
BclI	TGATCA	2 cut(s)	697, 1936
BcnI	CCSGG	2 cut(s)	271, 2412
BcoDI	GTCTC	4 cut(s)	614, 742, 1584, 2431
BfaI	CTAG	7 cut(s)	258, 498, 710, 1413, 1797, 2177, 2430
BfmI	CTRYAG	5 cut(s)	67, 84, 780, 1005, 1956
BfrI	CTTAAG	1 cut(s)	1756
BfuI	GTATCC	1 cut(s)	1970
BglII	AGATCT	1 cut(s)	988
BisI	GCNGC	3 cut(s)	750, 1278, 1419
BlsI	GCNGC	3 cut(s)	751, 1279, 1420
BmcAI	AGTACT	3 cut(s)	1003, 1394, 1954
Bme1390I	CCNGG	5 cut(s)	271, 585, 596, 865, 2412
Bme18I	GGWCC	5 cut(s)	647, 1091, 1605, 1716, 1925
BmgT120I	GGNCC	6 cut(s)	647, 1091, 1605, 1716, 1925, 2259
BmiI	GGNNCC	6 cut(s)	320, 693, 1243, 1347, 1366, 1717
BmrFI	CCNGG	5 cut(s)	271, 585, 596, 865, 2412
BmsI	GCATC	4 cut(s)	39, 556, 1608, 1816
BpiI	GAAGAC	2 cut(s)	267, 2340
BplI	GAGNNNNNCTC	4 cut(s)	598, 630, 812, 844
BpmI	CTGGAG	2 cut(s)	638, 2309
BpuEI	CTTGAG	3 cut(s)	70, 969, 1160
BpuMI	CCSGG	2 cut(s)	271, 2412
BsaBI	GATNNNNATC	1 cut(s)	993
BsaI	GGTCTC	1 cut(s)	1584
BsaJI	CCNNGG	7 cut(s)	595, 864, 1380, 1574, 1893, 2096, 2223
BsaXI	ACNNNNNCTCC	8 cut(s)	565, 595, 1221, 1251, 1330, 1360, 2392, 2422
Bsc4I	CCNNNNNNNGG	4 cut(s)	500, 2097, 2098, 2267
Bse1I	ACTGG	7 cut(s)	120, 310, 320, 1432, 1825, 1927, 2407
Bse8I	GATNNNNATC	1 cut(s)	993
BseBI	CCWGG	3 cut(s)	585, 596, 865
BseDI	CCNNGG	7 cut(s)	595, 864, 1380, 1574, 1893, 2096, 2223
BseGI	GGATG	2 cut(s)	2087, 2443
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	4 cut(s)	500, 2097, 2098, 2267
BseMII	CTCAG	6 cut(s)	353, 843, 989, 1176, 2218, 2481
BseNI	ACTGG	7 cut(s)	120, 310, 320, 1432, 1825, 1927, 2407
BseXI	GCAGC	3 cut(s)	761, 1264, 1405
BseYI	CCCAGC	1 cut(s)	1751
BsgI	GTGCAG	1 cut(s)	1318
Bsh1236I	CGCG	2 cut(s)	1848, 2225
BshFI	GGCC	7 cut(s)	119, 371, 402, 728, 1170, 1892, 2260
BshNI	GGYRCC	1 cut(s)	1241
BsiHKAI	GWGCWC	1 cut(s)	793
BsiSI	CCGG	2 cut(s)	270, 2412
BslFI	GGGAC	2 cut(s)	527, 1729
BslI	CCNNNNNNNGG	4 cut(s)	500, 2097, 2098, 2267
BsmAI	GTCTC	4 cut(s)	614, 742, 1584, 2431
BsmFI	GGGAC	2 cut(s)	527, 1729
BsmI	GAATGC	2 cut(s)	512, 526
BsnI	GGCC	7 cut(s)	119, 371, 402, 728, 1170, 1892, 2260
Bso31I	GGTCTC	1 cut(s)	1584
Bsp1286I	GDGCHC	2 cut(s)	793, 1348
Bsp19I	CCATGG	1 cut(s)	1380
Bsp68I	TCGCGA	1 cut(s)	1848
BspACI	CCGC	7 cut(s)	242, 322, 1188, 1193, 2180, 2223, 2225
BspANI	GGCC	7 cut(s)	119, 371, 402, 728, 1170, 1892, 2260
BspCNI	CTCAG	6 cut(s)	354, 842, 990, 1175, 2217, 2482
BspFNI	CGCG	2 cut(s)	1848, 2225
BspLI	GGNNCC	6 cut(s)	320, 693, 1243, 1347, 1366, 1717
BspMAI	CTGCAG	2 cut(s)	784, 1960
BspPI	GGATC	8 cut(s)	313, 326, 833, 1261, 1798, 2078, 2162, 2321
BspT107I	GGYRCC	1 cut(s)	1241
BspTI	CTTAAG	1 cut(s)	1756
BspTNI	GGTCTC	1 cut(s)	1584
BsrI	ACTGG	7 cut(s)	120, 310, 320, 1432, 1825, 1927, 2407
BssECI	CCNNGG	7 cut(s)	595, 864, 1380, 1574, 1893, 2096, 2223
BssT1I	CCWWGG	3 cut(s)	1380, 1893, 2096
Bst2UI	CCWGG	3 cut(s)	585, 596, 865
Bst4CI	ACNGT	7 cut(s)	140, 802, 809, 1249, 1578, 2342, 2418
Bst6I	CTCTTC	2 cut(s)	436, 1718
BstAFI	CTTAAG	1 cut(s)	1756
BstAPI	GCANNNNNTGC	2 cut(s)	788, 1190
BstC8I	GCNNGC	4 cut(s)	404, 1186, 1593, 2360
BstDEI	CTNAG	8 cut(s)	362, 407, 829, 998, 1162, 1335, 2204, 2490
BstDSI	CCRYGG	3 cut(s)	1380, 1574, 2223
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	2087, 2443
BstFNI	CGCG	2 cut(s)	1848, 2225
BstMAI	GTCTC	4 cut(s)	614, 742, 1584, 2431
BstMWI	GCNNNNNNNGC	7 cut(s)	788, 1190, 1418, 1898, 2123, 2155, 2222
BstNI	CCWGG	3 cut(s)	585, 596, 865
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	5 cut(s)	269, 583, 594, 863, 2410
BstSFI	CTRYAG	5 cut(s)	67, 84, 780, 1005, 1956
BstUI	CGCG	2 cut(s)	1848, 2225
BstV1I	GCAGC	3 cut(s)	761, 1264, 1405
BstV2I	GAAGAC	2 cut(s)	267, 2340
BstX2I	RGATCY	5 cut(s)	318, 988, 2083, 2167, 2326
BstXI	CCANNNNNNTGG	2 cut(s)	398, 1178
BstYI	RGATCY	5 cut(s)	318, 988, 2083, 2167, 2326
BsuI	GTATCC	1 cut(s)	1970
BsuRI	GGCC	7 cut(s)	119, 371, 402, 728, 1170, 1892, 2260
BtgI	CCRYGG	3 cut(s)	1380, 1574, 2223
BtgZI	GCGATG	4 cut(s)	1622, 1829, 1863, 2141
BtsCI	GGATG	2 cut(s)	2087, 2443
BtsI	GCAGTG	2 cut(s)	1272, 1965
BtsIMutI	CAGTG	8 cut(s)	113, 135, 313, 424, 1245, 1272, 1818, 1965
BtuMI	TCGCGA	1 cut(s)	1848
Cac8I	GCNNGC	4 cut(s)	404, 1186, 1593, 2360
CaiI	CAGNNNCTG	1 cut(s)	616
Cfr13I	GGNCC	6 cut(s)	647, 1091, 1605, 1716, 1925, 2259
Cfr42I	CCGCGG	1 cut(s)	2226
Csp6I	GTAC	5 cut(s)	810, 1002, 1393, 1953, 2343
CviAII	CATG	6 cut(s)	1341, 1357, 1381, 1888, 1946, 2458
CviQI	GTAC	5 cut(s)	810, 1002, 1393, 1953, 2343
DdeI	CTNAG	8 cut(s)	362, 407, 829, 998, 1162, 1335, 2204, 2490
EaeI	YGGCCR	4 cut(s)	117, 726, 1168, 1890
Eam1104I	CTCTTC	2 cut(s)	436, 1718
EarI	CTCTTC	2 cut(s)	436, 1718
EciI	GGCGGA	1 cut(s)	311
Eco130I	CCWWGG	3 cut(s)	1380, 1893, 2096
Eco24I	GRGCYC	1 cut(s)	1348
Eco31I	GGTCTC	1 cut(s)	1584
Eco47I	GGWCC	5 cut(s)	647, 1091, 1605, 1716, 1925
Eco57I	CTGAAG	2 cut(s)	111, 2352
Eco91I	GGTNACC	1 cut(s)	134
EcoO109I	RGGNCCY	2 cut(s)	1716, 2259
EcoO65I	GGTNACC	1 cut(s)	134
EcoRII	CCWGG	3 cut(s)	583, 594, 863
EcoT14I	CCWWGG	3 cut(s)	1380, 1893, 2096
EcoT22I	ATGCAT	1 cut(s)	1787
EcoT38I	GRGCYC	1 cut(s)	1348
ErhI	CCWWGG	3 cut(s)	1380, 1893, 2096
FaeI	CATG	6 cut(s)	1344, 1360, 1384, 1891, 1949, 2461
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	2 cut(s)	527, 1729
FatI	CATG	6 cut(s)	1340, 1356, 1380, 1887, 1945, 2457
FauI	CCCGC	1 cut(s)	2173
FauNDI	CATATG	1 cut(s)	1399
FbaI	TGATCA	2 cut(s)	697, 1936
FblI	GTMKAC	2 cut(s)	87, 1747
Fnu4HI	GCNGC	3 cut(s)	750, 1278, 1419
FokI	GGATG	2 cut(s)	2074, 2450
FriOI	GRGCYC	1 cut(s)	1348
Fsp4HI	GCNGC	3 cut(s)	750, 1278, 1419
FspBI	CTAG	7 cut(s)	258, 498, 710, 1413, 1797, 2177, 2430
GluI	GCNGC	3 cut(s)	750, 1278, 1419
GsaI	CCCAGC	1 cut(s)	1755
GsuI	CTGGAG	2 cut(s)	638, 2309
HaeIII	GGCC	7 cut(s)	119, 371, 402, 728, 1170, 1892, 2260
HapII	CCGG	2 cut(s)	270, 2412
Hin1II	CATG	6 cut(s)	1344, 1360, 1384, 1891, 1949, 2461
HincII	GTYRAC	3 cut(s)	1015, 2254, 2377
HindII	GTYRAC	3 cut(s)	1015, 2254, 2377
HpaI	GTTAAC	1 cut(s)	1015
HpaII	CCGG	2 cut(s)	270, 2412
HphI	GGTGA	5 cut(s)	481, 646, 848, 1835, 2119
HpyCH4III	ACNGT	7 cut(s)	140, 802, 809, 1249, 1578, 2342, 2418
HpyF10VI	GCNNNNNNNGC	7 cut(s)	788, 1190, 1418, 1898, 2123, 2155, 2222
HpyF3I	CTNAG	8 cut(s)	362, 407, 829, 998, 1162, 1335, 2204, 2490
Hsp92II	CATG	6 cut(s)	1344, 1360, 1384, 1891, 1949, 2461
Ksp22I	TGATCA	2 cut(s)	697, 1936
KspAI	GTTAAC	1 cut(s)	1015
KspI	CCGCGG	1 cut(s)	2226
LmnI	GCTCC	4 cut(s)	796, 1181, 1351, 2155
Lsp1109I	GCAGC	3 cut(s)	761, 1264, 1405
LweI	GCATC	4 cut(s)	39, 556, 1608, 1816
MaeI	CTAG	7 cut(s)	258, 498, 710, 1413, 1797, 2177, 2430
MaeIII	GTNAC	6 cut(s)	134, 460, 481, 859, 1048, 1195
MboII	GAAGA	7 cut(s)	267, 423, 893, 1314, 1735, 2152, 2345
MflI	RGATCY	5 cut(s)	318, 988, 2083, 2167, 2326
MhlI	GDGCHC	2 cut(s)	793, 1348
MlsI	TGGCCA	4 cut(s)	119, 728, 1170, 1892
MluNI	TGGCCA	4 cut(s)	119, 728, 1170, 1892
MlyI	GAGTC	4 cut(s)	542, 616, 962, 1735
MmeI	TCCRAC	3 cut(s)	1207, 1231, 2133
Mox20I	TGGCCA	4 cut(s)	119, 728, 1170, 1892
Mph1103I	ATGCAT	1 cut(s)	1787
MroXI	GAANNNNTTC	1 cut(s)	1369
MscI	TGGCCA	4 cut(s)	119, 728, 1170, 1892
MseI	TTAA	3 cut(s)	1014, 1536, 1757
MslI	CAYNNNNRTG	5 cut(s)	821, 1176, 1734, 1821, 1848
Msp20I	TGGCCA	4 cut(s)	119, 728, 1170, 1892
MspA1I	CMGCKG	5 cut(s)	244, 752, 833, 2225, 2479
MspCI	CTTAAG	1 cut(s)	1756
MspI	CCGG	2 cut(s)	270, 2412
MspR9I	CCNGG	5 cut(s)	271, 585, 596, 865, 2412
Mva1269I	GAATGC	2 cut(s)	512, 526
MvaI	CCWGG	3 cut(s)	585, 596, 865
MvnI	CGCG	2 cut(s)	1848, 2225
MwoI	GCNNNNNNNGC	7 cut(s)	788, 1190, 1418, 1898, 2123, 2155, 2222
NciI	CCSGG	2 cut(s)	271, 2412
NcoI	CCATGG	1 cut(s)	1380
NdeI	CATATG	1 cut(s)	1399
NlaIII	CATG	6 cut(s)	1344, 1360, 1384, 1891, 1949, 2461
NlaIV	GGNNCC	6 cut(s)	320, 693, 1243, 1347, 1366, 1717
NmuCI	GTSAC	3 cut(s)	460, 481, 859
NruI	TCGCGA	1 cut(s)	1848
NsiI	ATGCAT	1 cut(s)	1787
OliI	CACNNNNGTG	1 cut(s)	1821
PctI	GAATGC	2 cut(s)	512, 526
PdmI	GAANNNNTTC	1 cut(s)	1369
PfeI	GAWTC	6 cut(s)	236, 261, 881, 1687, 2198, 2284
PfoI	TCCNGGA	1 cut(s)	2410
PkrI	GCNGC	3 cut(s)	751, 1279, 1420
PleI	GAGTC	4 cut(s)	542, 615, 962, 1734
PpsI	GAGTC	4 cut(s)	542, 615, 962, 1734
PpuMI	RGGWCCY	1 cut(s)	1716
Psp5II	RGGWCCY	1 cut(s)	1716
Psp6I	CCWGG	3 cut(s)	583, 594, 863
PspEI	GGTNACC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	1751
PspGI	CCWGG	3 cut(s)	583, 594, 863
PspN4I	GGNNCC	6 cut(s)	320, 693, 1243, 1347, 1366, 1717
PspPI	GGNCC	6 cut(s)	647, 1091, 1605, 1716, 1925, 2259
PspPPI	RGGWCCY	1 cut(s)	1716
PstI	CTGCAG	2 cut(s)	784, 1960
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	5 cut(s)	318, 988, 2083, 2167, 2326
PvuII	CAGCTG	3 cut(s)	752, 833, 2479
RruI	TCGCGA	1 cut(s)	1848
RsaI	GTAC	5 cut(s)	811, 1003, 1394, 1954, 2344
RsaNI	GTAC	5 cut(s)	810, 1002, 1393, 1953, 2343
RseI	CAYNNNNRTG	5 cut(s)	821, 1176, 1734, 1821, 1848
SacII	CCGCGG	1 cut(s)	2226
SaqAI	TTAA	3 cut(s)	1014, 1536, 1757
SatI	GCNGC	3 cut(s)	750, 1278, 1419
Sau96I	GGNCC	6 cut(s)	647, 1091, 1605, 1716, 1925, 2259
ScaI	AGTACT	3 cut(s)	1003, 1394, 1954
SchI	GAGTC	4 cut(s)	542, 616, 962, 1735
ScrFI	CCNGG	5 cut(s)	271, 585, 596, 865, 2412
SduI	GDGCHC	2 cut(s)	793, 1348
SfaNI	GCATC	4 cut(s)	39, 556, 1608, 1816
SfcI	CTRYAG	5 cut(s)	67, 84, 780, 1005, 1956
Sfr303I	CCGCGG	1 cut(s)	2226
SgrBI	CCGCGG	1 cut(s)	2226
SinI	GGWCC	5 cut(s)	647, 1091, 1605, 1716, 1925
SmiMI	CAYNNNNRTG	5 cut(s)	821, 1176, 1734, 1821, 1848
SmlI	CTYRAG	4 cut(s)	49, 984, 1139, 1756
SmoI	CTYRAG	4 cut(s)	49, 984, 1139, 1756
SsiI	CCGC	7 cut(s)	242, 322, 1188, 1193, 2180, 2223, 2225
SspI	AATATT	1 cut(s)	1994
SspMI	CTAG	7 cut(s)	258, 498, 710, 1413, 1797, 2177, 2430
StyD4I	CCNGG	5 cut(s)	269, 583, 594, 863, 2410
StyI	CCWWGG	3 cut(s)	1380, 1893, 2096
TaaI	ACNGT	7 cut(s)	140, 802, 809, 1249, 1578, 2342, 2418
TaqI	TCGA	2 cut(s)	663, 1176
TaqII	GACCGA	1 cut(s)	1622
TatI	WGTACW	3 cut(s)	1001, 1392, 1952
TfiI	GAWTC	6 cut(s)	236, 261, 881, 1687, 2198, 2284
Tru1I	TTAA	3 cut(s)	1014, 1536, 1757
Tru9I	TTAA	3 cut(s)	1014, 1536, 1757
TscAI	CASTG	8 cut(s)	120, 135, 320, 424, 1252, 1272, 1825, 1965
TseFI	GTSAC	3 cut(s)	460, 481, 859
TseI	GCWGC	3 cut(s)	749, 1277, 1418
Tsp45I	GTSAC	3 cut(s)	460, 481, 859
TspDTI	ATGAA	9 cut(s)	455, 495, 839, 1163, 1169, 1373, 1832, 2025, 2144
TspGWI	ACGGA	1 cut(s)	1622
TspRI	CASTG	8 cut(s)	120, 135, 320, 424, 1252, 1272, 1825, 1965
Vha464I	CTTAAG	1 cut(s)	1756
VpaK11BI	GGWCC	5 cut(s)	647, 1091, 1605, 1716, 1925
XapI	RAATTY	7 cut(s)	17, 169, 374, 590, 1204, 1532, 2210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmiI	GTMKAC	2 cut(s)	87, 1747
XmnI	GAANNNNTTC	1 cut(s)	1369
XspI	CTAG	7 cut(s)	258, 498, 710, 1413, 1797, 2177, 2430
ZrmI	AGTACT	3 cut(s)	1003, 1394, 1954
Zsp2I	ATGCAT	1 cut(s)	1787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.