Rroxscaffold_1G00020430

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018611
Physical Location & Seq
Reverse (-)
24715493 .. 24719008
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020430.1

Sequence Viewer

Length: 1116 bp
ATGTCATCATTGATGGAGTTGAATGTAGAGGGAAACAAATTTACAAGCATACCTGAAAGTATTTGCGGACTTTCTAAGCTTGTAACACTTAAGTTGGGTGGTTGTATCCTGTTGCAGTCATTGCCAGAGCTTCCATTGAGTATAAAATTGGTTTCTGCACATGGTTGTATGTCACTTAGAAGTGATTCTGATCAGTATGAAGTATATCATTCAAATGATACAATACATGAAAACTGTCGGATTCATAAGCGCACAACATCAACCATATTTTCCTTTCTCATAACCAATTCACAATTTGCAGCATGGCTGAACAGATATCATGAGGTTAATGAGGTACAGGTCGAGATAAGTTTACCGATGAGAACTGCATATGGTTTATCACGTAGAACTCGTGGAAATATTCCATATTGGTTCAACAATAGAAGCAGCAACTTTTCTATAACAATCCCGCTTTCAGAGGACTTAACGAATAAGAGTAGGCTATGGATGGGATGTGCTTTCTATGTCGGTTTGGAAGTTAATGAGAATTTTGATAGCAGTTCATATTTCAAAGTCAGGCACAAGTTTGATTGTTGTTTTGATACCATGGAAGGTCCTGGTGACACACAAACTCTATACCACGAGGTAAATGCTAAAGGTGTCCATTTGACTGGGTCACTTGGATATTGGATAATAATGCCGCATCTGTGGTTTTCAGCAAGGTTGAATGCCTTCAATCAGTGCAGTAGCATCGAGGCTAACACTACAATTGATAGCCCATACGTGGAGGTTAAAATGAGTGGTGCCCGCCTACTGTACGAAGGAAAAGATTTTATGGAGTTTATCCAAGCAATAAAATGGGCAACTCAACCATCAAGAATTATGCAGAATAACAGTTCCTCTATTAGTCTGTTGGCTGAGGATGGTAGCTGCAAAATTGACTCGAGCATTTTGTTGAAAGAACATCTTAGCTCGCTGCCTTCAGATTTAGAATGCTTTGAGATAGTAAACAGCAAGCACAACTTGGATGAAGATATTTCTGTTTCTAATCTATACGAAGGATATAAAACTCTAACCACTCGCGATAGTCCTCAGACTCCAAAAAGATTTTATGTGGATTTGACTTGCTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

371

Amino Acids

42.19

Weight (kDa)

5.9

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018611)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0060391
rosa_roxburghii Rroxscaffold_1G00020430
rosa_samantha Rh5AG394100 Rh5AG394300 Rh5BG406500 Rh5CG398000 Rh5CG430300 Rh5DG421100 Rh5DG421400 Rh5DG421600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 782
AccII CGCG 1 cut(s) 1062
AciI CCGC 4 cut(s) 66, 449, 680, 787
AcsI RAATTY 2 cut(s) 38, 526
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 2 cut(s) 336, 797
AfiI CCNNNNNNNGG 1 cut(s) 763
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 7 cut(s) 22, 213, 415, 550, 706, 715, 937
AjnI CCWGG 1 cut(s) 595
AluBI AGCT 4 cut(s) 79, 130, 909, 951
AluI AGCT 4 cut(s) 79, 130, 909, 951
Ama87I CYCGRG 1 cut(s) 922
ApeKI GCWGC 4 cut(s) 299, 426, 909, 955
ApoI RAATTY 2 cut(s) 38, 526
Asp700I GAANNNNTTC 2 cut(s) 184, 710
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 593
AsuHPI GGTGA 1 cut(s) 611
AvaI CYCGRG 1 cut(s) 922
AvaII GGWCC 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 787
BanI GGYRCC 1 cut(s) 782
BauI CACGAG 2 cut(s) 390, 620
BbvCI CCTCAGC 1 cut(s) 897
BbvI GCAGC 4 cut(s) 311, 438, 896, 942
BccI CCATC 4 cut(s) 7, 481, 859, 896
BcgI CGANNNNNNTGC 4 cut(s) 611, 645, 712, 746
BciT130I CCWGG 1 cut(s) 597
BciVI GTATCC 1 cut(s) 116
BclI TGATCA 1 cut(s) 190
BfrI CTTAAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 116
BisI GCNGC 5 cut(s) 300, 427, 680, 910, 956
BlsI GCNGC 5 cut(s) 301, 428, 681, 911, 957
Bme1390I CCNGG 1 cut(s) 597
Bme18I GGWCC 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 922
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 1 cut(s) 597
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 2 cut(s) 691, 738
BmuI ACTGGG 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 897
BsaAI YACGTR 2 cut(s) 383, 763
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 585
Bsc4I CCNNNNNNNGG 1 cut(s) 763
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 1 cut(s) 119
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 597
BseDI CCNNGG 1 cut(s) 585
BseGI GGATG 4 cut(s) 492, 497, 907, 1012
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 763
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 2 cut(s) 888, 1085
BseNI ACTGG 1 cut(s) 655
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 4 cut(s) 311, 438, 896, 942
BsgI GTGCAG 2 cut(s) 141, 742
Bsh1236I CGCG 1 cut(s) 1062
BshNI GGYRCC 1 cut(s) 782
BsiHKCI CYCGRG 1 cut(s) 922
BslI CCNNNNNNNGG 1 cut(s) 763
BsmI GAATGC 2 cut(s) 712, 977
BsoBI CYCGRG 1 cut(s) 922
Bsp1286I GDGCHC 1 cut(s) 787
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 585
Bsp68I TCGCGA 1 cut(s) 1062
BspACI CCGC 4 cut(s) 66, 449, 680, 787
BspCNI CTCAG 2 cut(s) 889, 1084
BspFNI CGCG 1 cut(s) 1062
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 784
BspT107I GGYRCC 1 cut(s) 782
BspTI CTTAAG 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 119
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 1 cut(s) 190
BssSI CACGAG 2 cut(s) 390, 620
BssT1I CCWWGG 1 cut(s) 585
Bst2BI CACGAG 2 cut(s) 390, 620
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 4 cut(s) 236, 795, 875, 1112
BstAFI CTTAAG 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 121
BstBAI YACGTR 2 cut(s) 383, 763
BstC8I GCNNGC 3 cut(s) 787, 953, 995
BstDEI CTNAG 5 cut(s) 75, 176, 897, 947, 1071
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 4 cut(s) 492, 497, 907, 1012
BstFNI CGCG 1 cut(s) 1062
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 595
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 1 cut(s) 1062
BstV1I GCAGC 4 cut(s) 311, 438, 896, 942
BstXI CCANNNNNNTGG 1 cut(s) 650
BsuI GTATCC 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 4 cut(s) 492, 497, 907, 1012
BtsIMutI CAGTG 1 cut(s) 725
BtuMI TCGCGA 1 cut(s) 1062
Cac8I GCNNGC 3 cut(s) 787, 953, 995
CciI TCATGA 1 cut(s) 319
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 593
Csp6I GTAC 2 cut(s) 335, 796
CviAII CATG 5 cut(s) 161, 227, 303, 320, 586
CviJI RGCY 9 cut(s) 79, 130, 307, 481, 737, 756, 896, 909, 951
CviKI_1 RGCY 9 cut(s) 79, 130, 307, 481, 737, 756, 896, 909, 951
CviQI GTAC 2 cut(s) 335, 796
DdeI CTNAG 5 cut(s) 75, 176, 897, 947, 1071
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 585
Eco32I GATATC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 5 cut(s) 164, 230, 306, 323, 589
FalI AAGNNNNNCTT 4 cut(s) 930, 962, 986, 1018
FatI CATG 5 cut(s) 160, 226, 302, 319, 585
FauI CCCGC 2 cut(s) 456, 794
FauNDI CATATG 1 cut(s) 370
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 5 cut(s) 300, 427, 680, 910, 956
FokI GGATG 4 cut(s) 499, 504, 914, 1019
Fsp4HI GCNGC 5 cut(s) 300, 427, 680, 910, 956
GlaI GCGC 1 cut(s) 251
GluI GCNGC 5 cut(s) 300, 427, 680, 910, 956
HhaI GCGC 1 cut(s) 252
Hin1II CATG 5 cut(s) 164, 230, 306, 323, 589
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 4 cut(s) 185, 241, 920, 1075
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 2 cut(s) 353, 988
Hpy188I TCNGA 5 cut(s) 190, 240, 457, 964, 1074
Hpy188III TCNNGA 4 cut(s) 320, 343, 855, 1061
Hpy8I GTNNAC 2 cut(s) 353, 988
HpyAV CCTTC 5 cut(s) 584, 721, 794, 969, 1031
HpyCH4III ACNGT 4 cut(s) 236, 795, 875, 1112
HpyCH4IV ACGT 2 cut(s) 382, 762
HpyCH4V TGCA 7 cut(s) 115, 158, 299, 368, 723, 865, 912
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 5 cut(s) 75, 176, 897, 947, 1071
HpySE526I ACGT 2 cut(s) 382, 762
Hsp92II CATG 5 cut(s) 164, 230, 306, 323, 589
HspAI GCGC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 8 cut(s) 66, 122, 138, 323, 541, 582, 609, 636
Lsp1109I GCAGC 4 cut(s) 311, 438, 896, 942
LweI GCATC 2 cut(s) 691, 738
MaeII ACGT 2 cut(s) 382, 762
MaeIII GTNAC 4 cut(s) 82, 171, 599, 654
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 1022
MfeI CAATTG 1 cut(s) 747
MhlI GDGCHC 1 cut(s) 787
MluCI AATT 8 cut(s) 38, 146, 286, 293, 526, 747, 858, 915
MlyI GAGTC 2 cut(s) 914, 1069
MmeI TCCRAC 1 cut(s) 218
MroXI GAANNNNTTC 2 cut(s) 184, 710
MseI TTAA 5 cut(s) 90, 327, 464, 519, 771
MslI CAYNNNNRTG 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 597
MunI CAATTG 1 cut(s) 747
Mva1269I GAATGC 2 cut(s) 712, 977
MvaI CCWGG 1 cut(s) 597
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 1 cut(s) 121
NcoI CCATGG 1 cut(s) 585
NdeI CATATG 1 cut(s) 370
NdeII GATC 1 cut(s) 190
NlaIII CATG 5 cut(s) 164, 230, 306, 323, 589
NlaIV GGNNCC 1 cut(s) 784
NmuCI GTSAC 3 cut(s) 171, 599, 654
NruI TCGCGA 1 cut(s) 1062
PaeR7I CTCGAG 1 cut(s) 922
PagI TCATGA 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 388
PctI GAATGC 2 cut(s) 712, 977
PdmI GAANNNNTTC 2 cut(s) 184, 710
PfeI GAWTC 2 cut(s) 185, 241
PflFI GACNNNGTC 1 cut(s) 652
PkrI GCNGC 5 cut(s) 301, 428, 681, 911, 957
PleI GAGTC 2 cut(s) 914, 1069
PpsI GAGTC 2 cut(s) 914, 1069
Ppu21I YACGTR 2 cut(s) 383, 763
PpuMI RGGWCCY 1 cut(s) 593
Psp5II RGGWCCY 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 593
PspPPI RGGWCCY 1 cut(s) 593
PspXI VCTCGAGB 1 cut(s) 922
PsyI GACNNNGTC 1 cut(s) 652
RruI TCGCGA 1 cut(s) 1062
RsaI GTAC 2 cut(s) 336, 797
RsaNI GTAC 2 cut(s) 335, 796
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 5 cut(s) 90, 327, 464, 519, 771
SatI GCNGC 5 cut(s) 300, 427, 680, 910, 956
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 593
SchI GAGTC 2 cut(s) 914, 1069
ScrFI CCNGG 1 cut(s) 597
SduI GDGCHC 1 cut(s) 787
SfaNI GCATC 2 cut(s) 691, 738
Sfr274I CTCGAG 1 cut(s) 922
SinI GGWCC 1 cut(s) 593
SlaI CTCGAG 1 cut(s) 922
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 89, 922
SmoI CTYRAG 2 cut(s) 89, 922
Sse9I AATT 8 cut(s) 38, 146, 286, 293, 526, 747, 858, 915
SsiI CCGC 4 cut(s) 66, 449, 680, 787
SspI AATATT 1 cut(s) 400
StyD4I CCNGG 1 cut(s) 595
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 4 cut(s) 236, 795, 875, 1112
TaiI ACGT 2 cut(s) 385, 765
TaqI TCGA 3 cut(s) 342, 732, 923
TasI AATT 8 cut(s) 38, 146, 286, 293, 526, 747, 858, 915
TauI GCSGC 1 cut(s) 682
TfiI GAWTC 2 cut(s) 185, 241
Tru1I TTAA 5 cut(s) 90, 327, 464, 519, 771
Tru9I TTAA 5 cut(s) 90, 327, 464, 519, 771
TscAI CASTG 1 cut(s) 725
TseFI GTSAC 3 cut(s) 171, 599, 654
TseI GCWGC 4 cut(s) 299, 426, 909, 955
Tsp45I GTSAC 3 cut(s) 171, 599, 654
TspDTI ATGAA 5 cut(s) 213, 233, 243, 531, 1023
TspRI CASTG 1 cut(s) 725
Tth111I GACNNNGTC 1 cut(s) 652
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 2 cut(s) 38, 526
XhoI CTCGAG 1 cut(s) 922
XmnI GAANNNNTTC 2 cut(s) 184, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.