Rh5AG394300

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
68303983 .. 68306058
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG394300.1

Sequence Viewer

Length: 1701 bp
ATGGAGTTGAGAGTAGAGGGAAACAATTTTACAAGCATACCTGAAAGTATTTGCCGACTTTCTAAGCTTGTAACACTTGAGTTGAATGGTTGTATCCTGTTGCAGTCATTGCCAGAGCTTCCATTGAGTATAAAATTGGTTTCTGCATATGGTTGTATGTCACTTAAAAGTGATTCTGATCAGTATGAAGTATATCGTTCAAAATATGATAACCATGTTCAGATTCATAAGCGCACAACATCAACCAGATTTTCCGTTCTCATAACCAATTCACAATTTGCAGCATGGCTGAACAGATATCATGAGGTTAATGAGGTACAGGTCGAGATAAGTTTACCGGTGAGAACTGCATATGGTTTATCACATAGAACTCATGGAAATATTCCATATTGGTTCAACAATAGAAGCGGCAACTTTTCTATAACAATCCCGCTTTCAGGGGACTTGACTAATAAGAGTAGGCTATGGATGGGATGTGCTTTCTATGTCGGTTTGGAAGTTAATGAGAATTTTGATAGCAGTCCATATTTCAAAGTCAGGCACAAGTTTGATTGTTGTTTTGATACCATGGAAGGTCCTGGTGACACACAAACTCTATACCACGAGGTAAATGCTAAAGGTGTCCATTTGACTGGGTCAATTGGATATTGGATAATAATACCGCATCTGTGGTTTTCAGCAAGGCTGAATGCCTTCAATCAGTGCAGTAGCATTGAGGCTAACACTACAATTGATAGCCCATACGTGGAGGTTAAAATGAGTGGTGCCCGTCTACTGTACAAAAGAACAGATTTTATAGAGTTTATCCAAGCAATAAAATCGGCGACTCAACTATCAAGAATTATGCAGAATAACAGTTCCTCTATAAGTCTGTTGGCTGAGGATGGTAGCTGCAAAATTGACTCGAGCATTTTGTTGAAAGAACATCTTAGCTCGCTGCCTTCAGATTTAGAATGCTATGAGGGGCACGCCTATGCGGGAAGAAATTACTACGTTATTGAAGGCAAAGTCGTTCATCCCCATACCTGGTCTCTGTTAGGAGAAATCCTTCAGAAATATTCTGGTCAGCACTCGGTGTTTTATAGAGTAACTTTTCCTCAATATGGAATTCCAGAATGGTTCTGCAGTGTGAATAGTTCCTCGGCAGCCTTCCCGCTAAATCCTATGAATGGGTGGAAAGGAATAGCTGCATGTGCCGTTTTCACAGTCCTTGACAATTTGGATGCTGAAAAGCCTGACATAGGCTTTAATTTGAAAATTGGCGGTCGGAATATCAGTGGACACATCACTGAATCCCTTACTAGTTTGAAGGTTGGTGGTTTCATGGGTATGTTTTATGCATCACGTGGGTCACTTTCACATCTTATGTCATCTGATTGCACTTCCACCACCAAAGTCAGTTTTTATAGTAACAGCAAGAACATAACGGTACAGAGTTGTGGGTATCAAATTGTATTCCATGAAAATATGGAAGAATTTATGGAAACAATACTGCAATGTTCAGTCGCATCGCAGACTTCTCAGTTGTCAAAAGATACAAGTAGAGAAGAAACACCGAAAGAAAAAGGGAACCCTCTCTACCCAAACAGAAAAGGAGAAAAGATACCAGTAGAGAAGAAACACCGAAAGAAAATGAGAACTCTCTCTACCCGAATTTTGAAGTCTCCCTGTAGATCGATCTGTTGCTTCCTGTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

63.8

Weight (kDa)

8.41

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018611)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 764
AccI GTMKAC 1 cut(s) 772
AciI CCGC 6 cut(s) 408, 431, 662, 977, 1154, 1263
AcsI RAATTY 4 cut(s) 508, 1107, 1475, 1653
AcuI CTGAAG 2 cut(s) 927, 1034
AcvI CACGTG 1 cut(s) 1346
AdeI CACNNNGTG 1 cut(s) 1075
AfaI GTAC 3 cut(s) 318, 779, 1431
AfiI CCNNNNNNNGG 6 cut(s) 437, 745, 1026, 1103, 1169, 1241
AgeI ACCGGT 1 cut(s) 337
AhlI ACTAGT 1 cut(s) 1301
AjnI CCWGG 2 cut(s) 577, 1025
AluBI AGCT 5 cut(s) 67, 118, 891, 933, 1187
AluI AGCT 5 cut(s) 67, 118, 891, 933, 1187
Alw26I GTCTC 2 cut(s) 1035, 1668
Ama87I CYCGRG 1 cut(s) 904
ApeKI GCWGC 5 cut(s) 281, 891, 937, 1145, 1187
ApoI RAATTY 4 cut(s) 508, 1107, 1475, 1653
AsiGI ACCGGT 1 cut(s) 337
Asp700I GAANNNNTTC 2 cut(s) 692, 1047
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 352, 593
AvaI CYCGRG 1 cut(s) 904
AvaII GGWCC 1 cut(s) 575
BaeGI GKGCMC 2 cut(s) 769, 969
BanI GGYRCC 1 cut(s) 764
BauI CACGAG 1 cut(s) 602
BbrPI CACGTG 1 cut(s) 1346
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 5 cut(s) 293, 878, 924, 1157, 1174
BccI CCATC 2 cut(s) 463, 878
BceAI ACGGC 1 cut(s) 1181
BcgI CGANNNNNNTGC 4 cut(s) 593, 627, 801, 835
BciT130I CCWGG 2 cut(s) 579, 1027
BciVI GTATCC 1 cut(s) 104
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 1035, 1668
BcuI ACTAGT 1 cut(s) 1301
BfaI CTAG 1 cut(s) 1302
BfmI CTRYAG 2 cut(s) 1123, 1669
BfuI GTATCC 1 cut(s) 104
BisI GCNGC 6 cut(s) 282, 409, 892, 938, 1146, 1188
BlsI GCNGC 6 cut(s) 283, 410, 893, 939, 1147, 1189
Bme1390I CCNGG 2 cut(s) 579, 1027
Bme18I GGWCC 1 cut(s) 575
BmeT110I CYCGRG 1 cut(s) 904
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 766, 1571
BmrFI CCNGG 2 cut(s) 579, 1027
BmrI ACTGGG 1 cut(s) 642
BmsI GCATC 4 cut(s) 673, 1213, 1349, 1517
BmuI ACTGGG 1 cut(s) 642
Bpu10I CCTNAGC 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 1676
BsaAI YACGTR 2 cut(s) 745, 1346
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 1035
BsaJI CCNNGG 2 cut(s) 567, 1140
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 6 cut(s) 437, 745, 1026, 1103, 1169, 1241
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 637, 1607
Bse3DI GCAATG 2 cut(s) 107, 1502
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 2 cut(s) 579, 1027
BseCI ATCGAT 1 cut(s) 1676
BseDI CCNNGG 2 cut(s) 567, 1140
BseGI GGATG 5 cut(s) 474, 479, 889, 1015, 1228
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 6 cut(s) 437, 745, 1026, 1103, 1169, 1241
BseMI GCAATG 2 cut(s) 107, 1502
BseMII CTCAG 2 cut(s) 870, 1535
BseNI ACTGG 2 cut(s) 637, 1607
BseSI GKGCMC 2 cut(s) 769, 969
BseXI GCAGC 5 cut(s) 293, 878, 924, 1157, 1174
BsgI GTGCAG 1 cut(s) 724
Bsh1285I CGRYCG 1 cut(s) 1267
BshNI GGYRCC 1 cut(s) 764
BshTI ACCGGT 1 cut(s) 337
BshVI ATCGAT 1 cut(s) 1676
BsiEI CGRYCG 1 cut(s) 1267
BsiHKCI CYCGRG 1 cut(s) 904
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 6 cut(s) 437, 745, 1026, 1103, 1169, 1241
BsmAI GTCTC 2 cut(s) 1035, 1668
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 2 cut(s) 694, 959
Bso31I GGTCTC 1 cut(s) 1035
BsoBI CYCGRG 1 cut(s) 904
Bsp1286I GDGCHC 2 cut(s) 769, 969
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 3 cut(s) 178, 1673, 1677
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 6 cut(s) 408, 431, 662, 977, 1154, 1263
BspCNI CTCAG 2 cut(s) 871, 1534
BspDI ATCGAT 1 cut(s) 1676
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 766, 1571
BspMAI CTGCAG 1 cut(s) 1127
BspT107I GGYRCC 1 cut(s) 764
BspTNI GGTCTC 1 cut(s) 1035
BsrDI GCAATG 2 cut(s) 107, 1502
BsrFI RCCGGY 1 cut(s) 337
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 2 cut(s) 637, 1607
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 567, 1140
BssMI GATC 3 cut(s) 178, 1673, 1677
BssSI CACGAG 1 cut(s) 602
BssT1I CCWWGG 1 cut(s) 567
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 2 cut(s) 579, 1027
Bst4CI ACNGT 4 cut(s) 777, 857, 1207, 1429
BstAPI GCANNNNNTGC 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 777
BstBAI YACGTR 2 cut(s) 745, 1346
BstC8I GCNNGC 2 cut(s) 935, 969
BstDEI CTNAG 4 cut(s) 63, 879, 929, 1521
BstDSI CCRYGG 1 cut(s) 567
BstENI CCTNNNNNAGG 1 cut(s) 1239
BstF5I GGATG 5 cut(s) 474, 479, 889, 1015, 1228
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 3 cut(s) 181, 1676, 1680
BstMAI GTCTC 2 cut(s) 1035, 1668
BstMBI GATC 3 cut(s) 178, 1673, 1677
BstMCI CGRYCG 1 cut(s) 1267
BstMWI GCNNNNNNNGC 2 cut(s) 109, 1193
BstNI CCWGG 2 cut(s) 579, 1027
BstNSI RCATGY 1 cut(s) 1194
BstSCI CCNGG 2 cut(s) 577, 1025
BstSFI CTRYAG 2 cut(s) 1123, 1669
BstSLI GKGCMC 2 cut(s) 769, 969
BstV1I GCAGC 5 cut(s) 293, 878, 924, 1157, 1174
BstXI CCANNNNNNTGG 1 cut(s) 632
Bsu15I ATCGAT 1 cut(s) 1676
BsuI GTATCC 1 cut(s) 104
BsuTUI ATCGAT 1 cut(s) 1676
BtgI CCRYGG 1 cut(s) 567
BtgZI GCGATG 1 cut(s) 1494
BtsCI GGATG 5 cut(s) 474, 479, 889, 1015, 1228
BtsI GCAGTG 1 cut(s) 1132
BtsIMutI CAGTG 4 cut(s) 707, 1132, 1282, 1287
Cac8I GCNNGC 2 cut(s) 935, 969
CciI TCATGA 1 cut(s) 301
CfoI GCGC 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 575
ClaI ATCGAT 1 cut(s) 1676
CsiI ACCWGGT 1 cut(s) 1025
Csp6I GTAC 3 cut(s) 317, 778, 1430
CspAI ACCGGT 1 cut(s) 337
CviAII CATG 8 cut(s) 215, 285, 302, 374, 568, 1191, 1324, 1460
CviQI GTAC 3 cut(s) 317, 778, 1430
DdeI CTNAG 4 cut(s) 63, 879, 929, 1521
DpnI GATC 3 cut(s) 180, 1675, 1679
DpnII GATC 3 cut(s) 178, 1673, 1677
DraIII CACNNNGTG 1 cut(s) 1075
Eco130I CCWWGG 1 cut(s) 567
Eco31I GGTCTC 1 cut(s) 1035
Eco32I GATATC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 575
Eco57I CTGAAG 2 cut(s) 927, 1034
Eco72I CACGTG 1 cut(s) 1346
Eco88I CYCGRG 1 cut(s) 904
EcoNI CCTNNNNNAGG 1 cut(s) 1239
EcoO109I RGGNCCY 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 1107
EcoRII CCWGG 2 cut(s) 577, 1025
EcoRV GATATC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 567
EcoT22I ATGCAT 1 cut(s) 1342
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 8 cut(s) 218, 288, 305, 377, 571, 1194, 1327, 1463
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FaqI GGGAC 1 cut(s) 455
FatI CATG 8 cut(s) 214, 284, 301, 373, 567, 1190, 1323, 1459
FauI CCCGC 3 cut(s) 438, 970, 1161
FauNDI CATATG 2 cut(s) 148, 352
FbaI TGATCA 1 cut(s) 178
FblI GTMKAC 1 cut(s) 772
Fnu4HI GCNGC 6 cut(s) 282, 409, 892, 938, 1146, 1188
FokI GGATG 5 cut(s) 481, 486, 896, 1002, 1235
Fsp4HI GCNGC 6 cut(s) 282, 409, 892, 938, 1146, 1188
FspBI CTAG 1 cut(s) 1302
GlaI GCGC 1 cut(s) 233
GluI GCNGC 6 cut(s) 282, 409, 892, 938, 1146, 1188
HapII CCGG 1 cut(s) 338
HhaI GCGC 1 cut(s) 234
Hin1II CATG 8 cut(s) 218, 288, 305, 377, 571, 1194, 1327, 1463
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 5 cut(s) 173, 223, 826, 902, 1292
HpaII CCGG 1 cut(s) 338
HphI GGTGA 2 cut(s) 352, 593
Hpy166II GTNNAC 3 cut(s) 335, 773, 1280
Hpy188I TCNGA 6 cut(s) 178, 222, 946, 1053, 1269, 1375
Hpy188III TCNNGA 4 cut(s) 302, 325, 837, 1112
Hpy8I GTNNAC 3 cut(s) 335, 773, 1280
HpyAV CCTTC 7 cut(s) 566, 703, 951, 995, 1058, 1159, 1303
HpyCH4III ACNGT 4 cut(s) 777, 857, 1207, 1429
HpyCH4IV ACGT 3 cut(s) 744, 993, 1345
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 1193
HpyF3I CTNAG 4 cut(s) 63, 879, 929, 1521
HpySE526I ACGT 3 cut(s) 744, 993, 1345
Hsp92II CATG 8 cut(s) 218, 288, 305, 377, 571, 1194, 1327, 1463
HspAI GCGC 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 178, 1673, 1677
Lsp1109I GCAGC 5 cut(s) 293, 878, 924, 1157, 1174
LweI GCATC 4 cut(s) 673, 1213, 1349, 1517
MabI ACCWGGT 1 cut(s) 1025
MaeI CTAG 1 cut(s) 1302
MaeII ACGT 3 cut(s) 744, 993, 1345
MaeIII GTNAC 6 cut(s) 70, 159, 581, 1087, 1350, 1409
MalI GATC 3 cut(s) 180, 1675, 1679
MboI GATC 3 cut(s) 178, 1673, 1677
MboII GAAGA 4 cut(s) 993, 1484, 1559, 1627
MfeI CAATTG 2 cut(s) 639, 729
MhlI GDGCHC 2 cut(s) 769, 969
MlyI GAGTC 2 cut(s) 820, 896
MmeI TCCRAC 1 cut(s) 1247
Mph1103I ATGCAT 1 cut(s) 1342
MroXI GAANNNNTTC 2 cut(s) 692, 1047
MseI TTAA 5 cut(s) 165, 309, 501, 753, 1248
MslI CAYNNNNRTG 2 cut(s) 972, 1328
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 2 cut(s) 579, 1027
MunI CAATTG 2 cut(s) 639, 729
Mva1269I GAATGC 2 cut(s) 694, 959
MvaI CCWGG 2 cut(s) 579, 1027
MwoI GCNNNNNNNGC 2 cut(s) 109, 1193
NcoI CCATGG 1 cut(s) 567
NdeI CATATG 2 cut(s) 148, 352
NdeII GATC 3 cut(s) 178, 1673, 1677
NlaIII CATG 8 cut(s) 218, 288, 305, 377, 571, 1194, 1327, 1463
NlaIV GGNNCC 2 cut(s) 766, 1571
NmeAIII GCCGAG 1 cut(s) 1121
NmuCI GTSAC 3 cut(s) 159, 581, 1350
NsiI ATGCAT 1 cut(s) 1342
NspI RCATGY 1 cut(s) 1194
PaeR7I CTCGAG 1 cut(s) 904
PagI TCATGA 1 cut(s) 301
PctI GAATGC 2 cut(s) 694, 959
PdmI GAANNNNTTC 2 cut(s) 692, 1047
PfeI GAWTC 3 cut(s) 173, 223, 1292
PflFI GACNNNGTC 1 cut(s) 634
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 6 cut(s) 283, 410, 893, 939, 1147, 1189
PleI GAGTC 2 cut(s) 820, 896
PmaCI CACGTG 1 cut(s) 1346
PmlI CACGTG 1 cut(s) 1346
PpsI GAGTC 2 cut(s) 820, 896
Ppu21I YACGTR 2 cut(s) 745, 1346
PpuMI RGGWCCY 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 2 cut(s) 577, 1025
PspCI CACGTG 1 cut(s) 1346
PspGI CCWGG 2 cut(s) 577, 1025
PspN4I GGNNCC 2 cut(s) 766, 1571
PspPI GGNCC 1 cut(s) 575
PspPPI RGGWCCY 1 cut(s) 575
PspXI VCTCGAGB 1 cut(s) 904
PsrI GAACNNNNNNTAC 4 cut(s) 1562, 1594, 1630, 1662
PstI CTGCAG 1 cut(s) 1127
PsyI GACNNNGTC 1 cut(s) 634
RsaI GTAC 3 cut(s) 318, 779, 1431
RsaNI GTAC 3 cut(s) 317, 778, 1430
RseI CAYNNNNRTG 2 cut(s) 972, 1328
SaqAI TTAA 5 cut(s) 165, 309, 501, 753, 1248
SatI GCNGC 6 cut(s) 282, 409, 892, 938, 1146, 1188
Sau3AI GATC 3 cut(s) 178, 1673, 1677
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 2 cut(s) 820, 896
ScrFI CCNGG 2 cut(s) 579, 1027
SduI GDGCHC 2 cut(s) 769, 969
SexAI ACCWGGT 1 cut(s) 1025
SfaNI GCATC 4 cut(s) 673, 1213, 1349, 1517
SfcI CTRYAG 2 cut(s) 1123, 1669
Sfr274I CTCGAG 1 cut(s) 904
SinI GGWCC 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 904
SmiMI CAYNNNNRTG 2 cut(s) 972, 1328
SmlI CTYRAG 2 cut(s) 77, 904
SmoI CTYRAG 2 cut(s) 77, 904
SpeI ACTAGT 1 cut(s) 1301
SsiI CCGC 6 cut(s) 408, 431, 662, 977, 1154, 1263
SspI AATATT 2 cut(s) 382, 1058
SspMI CTAG 1 cut(s) 1302
StyD4I CCNGG 2 cut(s) 577, 1025
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 4 cut(s) 777, 857, 1207, 1429
TaiI ACGT 3 cut(s) 747, 996, 1348
TaqI TCGA 3 cut(s) 324, 905, 1676
TatI WGTACW 1 cut(s) 777
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 3 cut(s) 173, 223, 1292
Tru1I TTAA 5 cut(s) 165, 309, 501, 753, 1248
Tru9I TTAA 5 cut(s) 165, 309, 501, 753, 1248
TscAI CASTG 4 cut(s) 707, 1132, 1282, 1294
TseFI GTSAC 3 cut(s) 159, 581, 1350
TseI GCWGC 5 cut(s) 281, 891, 937, 1145, 1187
Tsp45I GTSAC 3 cut(s) 159, 581, 1350
TspDTI ATGAA 6 cut(s) 201, 215, 1004, 1181, 1312, 1476
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 4 cut(s) 707, 1132, 1282, 1294
Tth111I GACNNNGTC 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 575
XagI CCTNNNNNAGG 1 cut(s) 1239
XapI RAATTY 4 cut(s) 508, 1107, 1475, 1653
XceI RCATGY 1 cut(s) 1194
XhoI CTCGAG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 772
XmnI GAANNNNTTC 2 cut(s) 692, 1047
XspI CTAG 1 cut(s) 1302
Zsp2I ATGCAT 1 cut(s) 1342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.