Rroxscaffold_1G00034470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019519
Physical Location & Seq
Forward (+)
50083616 .. 50084323
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034470.1

Sequence Viewer

Length: 231 bp
ATGCTCCGCTCCGGAAACGATCCAAGCAGAGAGTGTTTCACTGGCCGAAGAGCAGAAAAGGAAGAGGAAGCTAATAGCGAGAGGGAAGCAATGGCGCTCTCTCCCCGCCGGCGACTTGTTGCCGCCGCTCGTTCCAAGCGCCGACTAGACAGAAAAGGAAGTTTCGCTGTTGGACAAGTGATTGCTCTCTATTTAAGATCAAACCTCAAGGAAGCTTGTGAAATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.64

Weight (kDa)

10.26

Isoelectric Point (pI)

94.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 9, 128
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 4 cut(s) 7, 106, 123, 126
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 43
AluBI AGCT 2 cut(s) 71, 215
AluI AGCT 2 cut(s) 71, 215
AlwI GGATC 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 1 cut(s) 43
AspLEI GCGC 2 cut(s) 97, 141
BfaI CTAG 1 cut(s) 146
BfoI RGCGCY 2 cut(s) 98, 142
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
BpuEI CTTGAG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 11
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 11
BseMI GCAATG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 46
BshFI GGCC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 12, 109
BsnI GGCC 1 cut(s) 45
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 2 cut(s) 19, 197
BspACI CCGC 4 cut(s) 7, 106, 123, 126
BspANI GGCC 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 11
BspPI GGATC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 43
BsrBI CCGCTC 2 cut(s) 9, 128
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 108
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 108
BssMI GATC 2 cut(s) 19, 197
Bst6I CTCTTC 2 cut(s) 43, 57
BstC8I GCNNGC 1 cut(s) 110
BstH2I RGCGCY 2 cut(s) 98, 142
BstHHI GCGC 2 cut(s) 97, 141
BstKTI GATC 2 cut(s) 22, 200
BstMBI GATC 2 cut(s) 19, 197
BsuRI GGCC 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 2 cut(s) 97, 141
Cfr10I RCCGGY 1 cut(s) 108
CviJI RGCY 3 cut(s) 45, 71, 215
CviKI_1 RGCY 3 cut(s) 45, 71, 215
DpnI GATC 2 cut(s) 21, 199
DpnII GATC 2 cut(s) 19, 197
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 43, 57
EarI CTCTTC 2 cut(s) 43, 57
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 123, 126
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 1 cut(s) 146
GlaI GCGC 2 cut(s) 96, 140
GluI GCNGC 2 cut(s) 123, 126
HaeII RGCGCY 2 cut(s) 98, 142
HaeIII GGCC 1 cut(s) 45
HapII CCGG 2 cut(s) 12, 109
HhaI GCGC 2 cut(s) 97, 141
Hin6I GCGC 2 cut(s) 95, 139
HinP1I GCGC 2 cut(s) 95, 139
HindIII AAGCTT 1 cut(s) 213
HpaII CCGG 2 cut(s) 12, 109
Hpy188III TCNNGA 1 cut(s) 12
HspAI GCGC 2 cut(s) 95, 139
Kpn2I TCCGGA 1 cut(s) 11
KroI GCCGGC 1 cut(s) 108
KroNI GCCGGC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 19, 197
LguI GCTCTTC 1 cut(s) 43
LmnI GCTCC 2 cut(s) 9, 14
LpnPI CCDG 3 cut(s) 25, 27, 122
MaeI CTAG 1 cut(s) 146
MalI GATC 2 cut(s) 21, 199
MbiI CCGCTC 2 cut(s) 9, 128
MboI GATC 2 cut(s) 19, 197
MboII GAAGA 2 cut(s) 60, 74
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 3 cut(s) 58, 75, 215
MreI CGCCGGCG 1 cut(s) 108
MroI TCCGGA 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 108
MseI TTAA 1 cut(s) 194
MspI CCGG 2 cut(s) 12, 109
NaeI GCCGGC 1 cut(s) 110
NdeII GATC 2 cut(s) 19, 197
NgoMIV GCCGGC 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 43
PdiI GCCGGC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 124, 127
SapI GCTCTTC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 2 cut(s) 19, 197
SetI ASST 3 cut(s) 73, 207, 217
SgrAI CRCCGGYG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SsiI CCGC 4 cut(s) 7, 106, 123, 126
SspMI CTAG 1 cut(s) 146
TauI GCSGC 2 cut(s) 125, 128
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 46
TspRI CASTG 1 cut(s) 46
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.