tRNA pseudouridine synthase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_roxburghii | Rroxscaffold_1G00034470 Rroxscaffold_2G00103410 Rroxscaffold_2G00104950 Rroxscaffold_3G00228960 Rroxscaffold_3G00233360 Rroxscaffold_4G00298290 Rroxscaffold_5G00385820 Rroxscaffold_6G00428120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 12, 179 |
| AcsI | RAATTY | 1 cut(s) | 24 |
| AgsI | TTSAA | 2 cut(s) | 31, 236 |
| AluBI | AGCT | 1 cut(s) | 35 |
| AluI | AGCT | 1 cut(s) | 35 |
| AlwI | GGATC | 2 cut(s) | 12, 179 |
| ApoI | RAATTY | 1 cut(s) | 24 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 37, 69 |
| AsuHPI | GGTGA | 1 cut(s) | 74 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BbsI | GAAGAC | 1 cut(s) | 50 |
| BfaI | CTAG | 1 cut(s) | 189 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BpiI | GAAGAC | 1 cut(s) | 50 |
| BpuEI | CTTGAG | 3 cut(s) | 59, 70, 143 |
| Bsp143I | GATC | 4 cut(s) | 4, 57, 149, 184 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 2 cut(s) | 12, 179 |
| BssMI | GATC | 4 cut(s) | 4, 57, 149, 184 |
| BstKTI | GATC | 4 cut(s) | 7, 60, 152, 187 |
| BstMBI | GATC | 4 cut(s) | 4, 57, 149, 184 |
| BstV2I | GAAGAC | 1 cut(s) | 50 |
| BstX2I | RGATCY | 2 cut(s) | 4, 184 |
| BstYI | RGATCY | 2 cut(s) | 4, 184 |
| BtsI | GCAGTG | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| CviJI | RGCY | 1 cut(s) | 35 |
| CviKI_1 | RGCY | 1 cut(s) | 35 |
| DpnI | GATC | 4 cut(s) | 6, 59, 151, 186 |
| DpnII | GATC | 4 cut(s) | 4, 57, 149, 184 |
| FaiI | YATR | 2 cut(s) | 207, 241 |
| FspBI | CTAG | 1 cut(s) | 189 |
| HinfI | GANTC | 2 cut(s) | 17, 74 |
| HphI | GGTGA | 1 cut(s) | 74 |
| Hpy188I | TCNGA | 1 cut(s) | 22 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 87, 221 |
| HpyAV | CCTTC | 1 cut(s) | 203 |
| Kzo9I | GATC | 4 cut(s) | 4, 57, 149, 184 |
| LpnPI | CCDG | 1 cut(s) | 206 |
| MaeI | CTAG | 1 cut(s) | 189 |
| MalI | GATC | 4 cut(s) | 6, 59, 151, 186 |
| MboI | GATC | 4 cut(s) | 4, 57, 149, 184 |
| MboII | GAAGA | 2 cut(s) | 55, 194 |
| MflI | RGATCY | 2 cut(s) | 4, 184 |
| MluCI | AATT | 1 cut(s) | 24 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| MmeI | TCCRAC | 2 cut(s) | 32, 103 |
| MnlI | CCTC | 1 cut(s) | 167 |
| MseI | TTAA | 1 cut(s) | 146 |
| NdeII | GATC | 4 cut(s) | 4, 57, 149, 184 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PleI | GAGTC | 1 cut(s) | 25 |
| PpsI | GAGTC | 1 cut(s) | 25 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 2 cut(s) | 4, 184 |
| SaqAI | TTAA | 1 cut(s) | 146 |
| Sau3AI | GATC | 4 cut(s) | 4, 57, 149, 184 |
| SchI | GAGTC | 1 cut(s) | 26 |
| SetI | ASST | 3 cut(s) | 37, 159, 214 |
| SgeI | CNNG | 9 cut(s) | 50, 60, 99, 140, 172, 189, 201, 209, 233 |
| SmlI | CTYRAG | 3 cut(s) | 38, 85, 158 |
| SmoI | CTYRAG | 3 cut(s) | 38, 85, 158 |
| Sse9I | AATT | 1 cut(s) | 24 |
| SspMI | CTAG | 1 cut(s) | 189 |
| TasI | AATT | 1 cut(s) | 24 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| Tru1I | TTAA | 1 cut(s) | 146 |
| Tru9I | TTAA | 1 cut(s) | 146 |
| TscAI | CASTG | 1 cut(s) | 174 |
| TspDTI | ATGAA | 2 cut(s) | 87, 222 |
| TspRI | CASTG | 1 cut(s) | 174 |
| XapI | RAATTY | 1 cut(s) | 24 |
| XspI | CTAG | 1 cut(s) | 189 |