Rroxscaffold_2G00103410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019519
Physical Location & Seq
Reverse (-)
25964123 .. 25983101
18979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103410.1

Sequence Viewer

Length: 537 bp
ATGGAATCAGTCAAGCCAAAACAAGGGGCTTTTGAGAAACAACACTATAAGAGTAGCGCTAATTCAAGACCTCTTCGGTCAAGACGGAGACCTTCGACTTCGAGGTCCGGGGGCAATGTTTGGACCCAAAATGAGCATTTTGGCCCGACAAGGCACGTCTTGGAGAAATTGAGCCAATCTAAGCTAAAGTCATGCTTTAGCAAGTTCTCCTCATTTCCTAGTGGTTCTAGCTCGCTTGATCTACAACATCGAGTATCGATTGTGATTTTCAAGAAGCTCAACAAAGTCCTCGCCACGAGGCACAAAGAATCCCACGACGAGGAGATTAACCTCCATGAAATCAATCGACTACCTTTGCAGCTTTTAGACAAAGAATTCAAAAACATATTTCTTGTAGGGCCTGCAACTCAAATGTTGACGATTGTTGTTGATGAGGTTCCATTTGTGGGAAGAAGAAGGAGGAAAAGAGGGTTTCAATCTGCTAAGATTAGGGTTCCATTTGTGGATTCGGGGTTTCTCGGCTACTCGAATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.43

Weight (kDa)

10.73

Isoelectric Point (pI)

71.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 374
AfeI AGCGCT 1 cut(s) 58
AfiI CCNNNNNNNGG 3 cut(s) 23, 319, 446
AgsI TTSAA 4 cut(s) 66, 271, 379, 476
AjiI CACGTC 1 cut(s) 157
AluBI AGCT 4 cut(s) 184, 231, 277, 361
AluI AGCT 4 cut(s) 184, 231, 277, 361
Alw26I GTCTC 1 cut(s) 82
Aor51HI AGCGCT 1 cut(s) 58
AoxI GGCC 2 cut(s) 142, 398
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 1 cut(s) 374
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 105, 123, 143, 398
AsuC2I CCSGG 1 cut(s) 109
AvaII GGWCC 2 cut(s) 105, 123
BauI CACGAG 1 cut(s) 295
BbvI GCAGC 1 cut(s) 370
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 219, 228
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 2 cut(s) 105, 123
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 4 cut(s) 105, 123, 143, 398
BmiI GGNNCC 3 cut(s) 125, 438, 495
BmrFI CCNGG 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 319, 446
Bse3DI GCAATG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 3 cut(s) 23, 319, 446
BseMI GCAATG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 199, 335
BseXI GCAGC 1 cut(s) 370
BshFI GGCC 2 cut(s) 144, 400
BshVI ATCGAT 1 cut(s) 257
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 3 cut(s) 23, 319, 446
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 144, 400
Bso31I GGTCTC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 2 cut(s) 144, 400
BspDI ATCGAT 1 cut(s) 257
BspLI GGNNCC 3 cut(s) 125, 438, 495
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 233, 402
BstDEI CTNAG 2 cut(s) 180, 483
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 257
BsuRI GGCC 2 cut(s) 144, 400
BsuTUI ATCGAT 1 cut(s) 257
BtrI CACGTC 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 233, 402
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 4 cut(s) 105, 123, 143, 398
ClaI ATCGAT 1 cut(s) 257
CviAII CATG 2 cut(s) 192, 335
DdeI CTNAG 2 cut(s) 180, 483
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 105, 123
Eco47III AGCGCT 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 374
FaeI CATG 2 cut(s) 195, 338
FaiI YATR 4 cut(s) 48, 193, 336, 386
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 2 cut(s) 191, 334
Fnu4HI GCNGC 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 2 cut(s) 219, 228
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 2 cut(s) 144, 400
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 195, 338
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 4 cut(s) 5, 308, 506, 529
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 417
Hpy188III TCNNGA 3 cut(s) 66, 81, 271
Hpy8I GTNNAC 1 cut(s) 417
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 102, 450
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 358, 404
HpyF3I CTNAG 2 cut(s) 180, 483
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 195, 338
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 2 cut(s) 121, 414
Lsp1109I GCAGC 1 cut(s) 370
MaeI CTAG 2 cut(s) 219, 228
MaeII ACGT 1 cut(s) 156
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 3 cut(s) 65, 462, 465
MluCI AATT 3 cut(s) 61, 167, 374
MseI TTAA 1 cut(s) 327
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 109
NciI CCSGG 1 cut(s) 109
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 195, 338
NlaIV GGNNCC 3 cut(s) 125, 438, 495
NmeAIII GCCGAG 1 cut(s) 498
PfeI GAWTC 4 cut(s) 5, 308, 506, 529
PkrI GCNGC 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 125, 438, 495
PspPI GGNCC 4 cut(s) 105, 123, 143, 398
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 4 cut(s) 105, 123, 143, 398
ScrFI CCNGG 1 cut(s) 109
SinI GGWCC 2 cut(s) 105, 123
Sse9I AATT 3 cut(s) 61, 167, 374
SspMI CTAG 2 cut(s) 219, 228
StyD4I CCNGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 159
TaqI TCGA 6 cut(s) 95, 101, 250, 257, 346, 527
TaqII GACCGA 1 cut(s) 66
TasI AATT 3 cut(s) 61, 167, 374
TfiI GAWTC 4 cut(s) 5, 308, 506, 529
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseI GCWGC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 105, 123
XapI RAATTY 1 cut(s) 374
XspI CTAG 2 cut(s) 219, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.