Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019519

Physical Location & Seq

Genomic Coordinates Reverse (-)

28390921 .. 28391650

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGTCCATACGGAAGCAAGCCGCCAAGCTCGTGGAGCAAGTTGCTAAGCAACTGCAGATCGTATTGAAACGATTGGGAAGTTTATGTAATGAAGCTGTTATGGTTGATGAAACTGAAATTCTGTGCCATCAACAACTTCATGATTTATACACTTCTACGAGGGCAGCGCAGGCCGTCGTTTTGGTTGCTGCCGGAAAGAACACCACCAAGGAGAAAGTTAAAGGGAGATTGCTAGGTTCTATGGTTTTGCTTGTTGAGGCACGGATGGATCCAACTATTGAGTCCGAAATTTTCAAAGCTCTTGAGAAGACAAGACTTTTGATCGGTGATAAGAATGAATCACATTACTCAAGATGTGGTAGGACAGAAAAGGGAGTTTCTGCTGTTGGACAAGTGATTGCTCTCTATTTAAGATCAAACCTCAAGGAAGCATGTGAAATCGGTGAAGATCCTAGCAACCAAGAACAATATGAAGGTAAAAATCAGGAACTCTATTTTGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

169

Amino Acids

18.91

Weight (kDa)

6.34

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019519)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00034470 Rroxscaffold_2G00103410 Rroxscaffold_2G00104950 Rroxscaffold_3G00228960 Rroxscaffold_3G00233360 Rroxscaffold_4G00298290 Rroxscaffold_5G00385820 Rroxscaffold_6G00428120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	266, 279, 446
AcsI	RAATTY	2 cut(s)	120, 291
AgsI	TTSAA	3 cut(s)	70, 298, 503
AluBI	AGCT	3 cut(s)	31, 98, 302
AluI	AGCT	3 cut(s)	31, 98, 302
AlwI	GGATC	3 cut(s)	266, 279, 446
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	167, 191
ApoI	RAATTY	2 cut(s)	120, 291
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AspLEI	GCGC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	341, 458
BamHI	GGATCC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	178, 179
BccI	CCATC	2 cut(s)	138, 262
BceAI	ACGGC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	236, 456
BfmI	CTRYAG	1 cut(s)	56
BisI	GCNGC	3 cut(s)	24, 168, 192
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	3 cut(s)	25, 169, 193
BmiI	GGNNCC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	3 cut(s)	326, 337, 410
BsaJI	CCNNGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	178, 179
BshFI	GGCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	195
BsnI	GGCC	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	60, 271, 324, 416, 451
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	60
BspPI	GGATC	3 cut(s)	266, 279, 446
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	5 cut(s)	60, 271, 324, 416, 451
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	21, 174
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	5 cut(s)	63, 274, 327, 419, 454
BstMBI	GATC	5 cut(s)	60, 271, 324, 416, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 173
BstNSI	RCATGY	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	178, 179
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	2 cut(s)	271, 451
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	2 cut(s)	271, 451
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	21, 174
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	172
CviAII	CATG	2 cut(s)	143, 435
CviJI	RGCY	5 cut(s)	23, 31, 98, 176, 302
CviKI_1	RGCY	5 cut(s)	23, 31, 98, 176, 302
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	5 cut(s)	62, 273, 326, 418, 453
DpnII	GATC	5 cut(s)	60, 271, 324, 416, 451
Eco130I	CCWWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	146, 438
FaiI	YATR	9 cut(s)	11, 88, 104, 144, 151, 245, 436, 474, 508
FatI	CATG	2 cut(s)	142, 434
Fnu4HI	GCNGC	3 cut(s)	24, 168, 192
FokI	GGATG	1 cut(s)	280
Fsp4HI	GCNGC	3 cut(s)	24, 168, 192
FspBI	CTAG	2 cut(s)	236, 456
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	24, 168, 192
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	146, 438
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	3 cut(s)	5, 284, 341
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	341, 458
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	4 cut(s)	143, 305, 354, 488
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	470
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 173
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	146, 438
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	5 cut(s)	60, 271, 324, 416, 451
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	158, 208, 473
Lsp1109I	GCAGC	2 cut(s)	178, 179
MaeI	CTAG	2 cut(s)	236, 456
MalI	GATC	5 cut(s)	62, 273, 326, 418, 453
MboI	GATC	5 cut(s)	60, 271, 324, 416, 451
MboII	GAAGA	2 cut(s)	322, 461
MflI	RGATCY	2 cut(s)	271, 451
MluCI	AATT	2 cut(s)	120, 291
MlyI	GAGTC	2 cut(s)	14, 293
MmeI	TCCRAC	2 cut(s)	299, 370
MnlI	CCTC	3 cut(s)	156, 253, 434
MseI	TTAA	2 cut(s)	222, 413
MspI	CCGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	37, 173
NdeII	GATC	5 cut(s)	60, 271, 324, 416, 451
NlaIII	CATG	2 cut(s)	146, 438
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	1 cut(s)	438
PagI	TCATGA	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	25, 169, 193
PleI	GAGTC	2 cut(s)	13, 292
PpsI	GAGTC	2 cut(s)	13, 292
PspN4I	GGNNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	60
PsuI	RGATCY	2 cut(s)	271, 451
SaqAI	TTAA	2 cut(s)	222, 413
SatI	GCNGC	3 cut(s)	24, 168, 192
Sau3AI	GATC	5 cut(s)	60, 271, 324, 416, 451
SchI	GAGTC	2 cut(s)	14, 293
SetI	ASST	6 cut(s)	33, 100, 241, 304, 426, 481
SfcI	CTRYAG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	305, 352, 425
SmoI	CTYRAG	3 cut(s)	305, 352, 425
Sse9I	AATT	2 cut(s)	120, 291
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	236, 456
StyI	CCWWGG	1 cut(s)	210
TasI	AATT	2 cut(s)	120, 291
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	222, 413
Tru9I	TTAA	2 cut(s)	222, 413
TseI	GCWGC	2 cut(s)	167, 191
TspDTI	ATGAA	5 cut(s)	108, 126, 131, 354, 489
TspGWI	ACGGA	2 cut(s)	28, 280
XapI	RAATTY	2 cut(s)	120, 291
XceI	RCATGY	1 cut(s)	438
XspI	CTAG	2 cut(s)	236, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.