Rroxscaffold_6G00428120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019519
Physical Location & Seq
Reverse (-)
48606445 .. 48636471
30027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428120.1

Sequence Viewer

Length: 846 bp
ATGTTGTCTGAGAGAAAGGAAAGAGAAAAGCAAGCATGCGGCAGAAAAGAACAAAAGAAAGCAAGTTTCATGGCAGAAAAGAAGAATTTTAGGGCCAGGAGTGAGGCCGACACCCTCGGCCGACATGCGGTATTGACATCGCAGATTGCAACGCTCTCGTTAAAGAGATCCTCAAAGAAAACCCGCATCCTTAGAGTTACCCTTACAACTCTTATAAAGTCTCAACCATTCCATCTATCAAATGCTTCATCAAAACTTACCACAAATCAATCCTTAGGATTTCATGATTCAGAGATTAAATCAAACTCCACATCACATACGAACAAGCTCATTCGTGAGAGAATTTTAGGGCCGGGAGTGAGGCCGACACCCTCGGCCGACATGCGTATTGACATCGCATTGCAACGCTCCGTTAAAGAGATCCTCAAATTTCTCTCTCTCGGCCGGAAATCACCCGATTTCTTCTTCAATCGATTTCTCCTCATCCGGCAACCATTTGAGTACCGCGACCACAACGGTTACGGAAATAGCCAAGCAAGGGTAACGCCCGCAACCCAGCCTAAGCTAAAGTCACGCTTTAGCAAGTTCTCCTCATTTCCTAGTGGTTCTCGCTCGCTTGATCTACAACATCGAGTATCGATTGTGATTTTCAAGAAGCTCAGCAAAAGTCCTCGCCACGAGGCACAAAGAATCCCACGACGAGGTTGGTGCTCTCCTCGTCCACAATCTCTTGAAAGAAGTCGGTCAAGGGACACCCCCGACGACCGCACCCGACGGGACGATTGGCGCGTGAGGAGACCAAACGGTTTTCGAGGAGGCCTACAGAGATTGGCCTGCGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

32.36

Weight (kDa)

11.42

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccII CGCG 2 cut(s) 507, 789
AciI CCGC 6 cut(s) 39, 128, 184, 505, 549, 766
AclWI GGATC 2 cut(s) 162, 415
AcoI YGGCCR 3 cut(s) 118, 375, 442
AcsI RAATTY 3 cut(s) 85, 342, 428
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 3 cut(s) 127, 538, 701
AgsI TTSAA 3 cut(s) 469, 652, 734
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 4 cut(s) 328, 565, 658, 842
AluI AGCT 4 cut(s) 328, 565, 658, 842
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 2 cut(s) 225, 790
AlwI GGATC 2 cut(s) 162, 415
AoxI GGCC 9 cut(s) 93, 105, 118, 350, 362, 375, 442, 817, 831
ApoI RAATTY 3 cut(s) 85, 342, 428
AspLEI GCGC 1 cut(s) 789
AspS9I GGNCC 2 cut(s) 93, 350
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 444
AxyI CCTNAGG 1 cut(s) 274
BauI CACGAG 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 713
BccI CCATC 1 cut(s) 240
BcgI CGANNNNNNTGC 4 cut(s) 138, 172, 690, 724
BciT130I CCWGG 1 cut(s) 97
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 225, 790
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 821
BisI GCNGC 1 cut(s) 40
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 97, 354
BmgT120I GGNCC 2 cut(s) 93, 350
BmrFI CCNGG 2 cut(s) 97, 354
BmsI GCATC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 561
Bpu1102I GCTNAGC 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 354
Bsa29I ATCGAT 2 cut(s) 472, 638
BsaI GGTCTC 1 cut(s) 790
BsaJI CCNNGG 2 cut(s) 115, 372
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 538, 701
Bse21I CCTNAGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 2 cut(s) 472, 638
BseDI CCNNGG 2 cut(s) 115, 372
BseGI GGATG 2 cut(s) 186, 483
BseLI CCNNNNNNNGG 3 cut(s) 127, 538, 701
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 673
BseRI GAGGAG 5 cut(s) 470, 580, 705, 808, 828
BseX3I CGGCCG 3 cut(s) 118, 375, 442
BseYI CCCAGC 1 cut(s) 555
Bsh1236I CGCG 2 cut(s) 507, 789
Bsh1285I CGRYCG 4 cut(s) 121, 378, 445, 766
BshFI GGCC 9 cut(s) 95, 107, 120, 352, 364, 377, 444, 819, 833
BshVI ATCGAT 2 cut(s) 472, 638
BsiEI CGRYCG 4 cut(s) 121, 378, 445, 766
BsiHKAI GWGCWC 1 cut(s) 713
BsiSI CCGG 3 cut(s) 353, 445, 487
BslFI GGGAC 2 cut(s) 764, 791
BslI CCNNNNNNNGG 3 cut(s) 127, 538, 701
BsmAI GTCTC 2 cut(s) 225, 790
BsmFI GGGAC 2 cut(s) 764, 791
BsnI GGCC 9 cut(s) 95, 107, 120, 352, 364, 377, 444, 819, 833
Bso31I GGTCTC 1 cut(s) 790
Bsp1286I GDGCHC 1 cut(s) 713
Bsp143I GATC 3 cut(s) 167, 420, 619
Bsp1720I GCTNAGC 1 cut(s) 659
BspACI CCGC 6 cut(s) 39, 128, 184, 505, 549, 766
BspANI GGCC 9 cut(s) 95, 107, 120, 352, 364, 377, 444, 819, 833
BspCNI CTCAG 1 cut(s) 672
BspDI ATCGAT 2 cut(s) 472, 638
BspFNI CGCG 2 cut(s) 507, 789
BspHI TCATGA 1 cut(s) 283
BspPI GGATC 2 cut(s) 162, 415
BspTNI GGTCTC 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 115, 372
BssMI GATC 3 cut(s) 167, 420, 619
BssSI CACGAG 1 cut(s) 677
Bst2BI CACGAG 1 cut(s) 677
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 518, 806
BstC8I GCNNGC 5 cut(s) 33, 37, 549, 614, 835
BstDEI CTNAG 5 cut(s) 9, 191, 274, 561, 659
BstF5I GGATG 2 cut(s) 186, 483
BstFNI CGCG 2 cut(s) 507, 789
BstHHI GCGC 1 cut(s) 789
BstKTI GATC 3 cut(s) 170, 423, 622
BstMAI GTCTC 2 cut(s) 225, 790
BstMBI GATC 3 cut(s) 167, 420, 619
BstMCI CGRYCG 4 cut(s) 121, 378, 445, 766
BstMWI GCNNNNNNNGC 1 cut(s) 839
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 3 cut(s) 39, 128, 385
BstSCI CCNGG 2 cut(s) 95, 352
BstSFI CTRYAG 1 cut(s) 821
BstUI CGCG 2 cut(s) 507, 789
BstX2I RGATCY 2 cut(s) 167, 420
BstYI RGATCY 2 cut(s) 167, 420
BstZI CGGCCG 3 cut(s) 118, 375, 442
Bsu15I ATCGAT 2 cut(s) 472, 638
Bsu36I CCTNAGG 1 cut(s) 274
BsuRI GGCC 9 cut(s) 95, 107, 120, 352, 364, 377, 444, 819, 833
BsuTUI ATCGAT 2 cut(s) 472, 638
BtgZI GCGATG 2 cut(s) 123, 379
BtsCI GGATG 2 cut(s) 186, 483
Cac8I GCNNGC 5 cut(s) 33, 37, 549, 614, 835
CciI TCATGA 1 cut(s) 283
CfoI GCGC 1 cut(s) 789
Cfr13I GGNCC 2 cut(s) 93, 350
ClaI ATCGAT 2 cut(s) 472, 638
Csp6I GTAC 1 cut(s) 502
CviAII CATG 5 cut(s) 36, 70, 125, 284, 382
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 5 cut(s) 9, 191, 274, 561, 659
DpnI GATC 3 cut(s) 169, 422, 621
DpnII GATC 3 cut(s) 167, 420, 619
EaeI YGGCCR 3 cut(s) 118, 375, 442
EagI CGGCCG 3 cut(s) 118, 375, 442
EclXI CGGCCG 3 cut(s) 118, 375, 442
Eco147I AGGCCT 1 cut(s) 819
Eco31I GGTCTC 1 cut(s) 790
Eco52I CGGCCG 3 cut(s) 118, 375, 442
Eco81I CCTNAGG 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 95
FaeI CATG 5 cut(s) 39, 73, 128, 287, 385
FaiI YATR 7 cut(s) 37, 71, 126, 215, 285, 318, 383
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 2 cut(s) 764, 791
FatI CATG 5 cut(s) 35, 69, 124, 283, 381
FauI CCCGC 2 cut(s) 191, 556
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 173, 470
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 600
GlaI GCGC 1 cut(s) 788
GluI GCNGC 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 559
HaeIII GGCC 9 cut(s) 95, 107, 120, 352, 364, 377, 444, 819, 833
HapII CCGG 3 cut(s) 353, 445, 487
HhaI GCGC 1 cut(s) 789
Hin1II CATG 5 cut(s) 39, 73, 128, 287, 385
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 2 cut(s) 287, 690
HpaII CCGG 3 cut(s) 353, 445, 487
HphI GGTGA 1 cut(s) 444
Hpy166II GTNNAC 1 cut(s) 722
Hpy188I TCNGA 2 cut(s) 10, 292
Hpy188III TCNNGA 4 cut(s) 284, 335, 652, 731
Hpy8I GTNNAC 1 cut(s) 722
Hpy99I CGWCG 3 cut(s) 702, 764, 777
HpyCH4III ACNGT 2 cut(s) 518, 806
HpyCH4V TGCA 2 cut(s) 149, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 839
HpyF3I CTNAG 5 cut(s) 9, 191, 274, 561, 659
Hsp92II CATG 5 cut(s) 39, 73, 128, 287, 385
HspAI GCGC 1 cut(s) 787
Kzo9I GATC 3 cut(s) 167, 420, 619
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 6 cut(s) 82, 109, 366, 458, 500, 569
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 600
MaeIII GTNAC 4 cut(s) 196, 518, 541, 570
MalI GATC 3 cut(s) 169, 422, 621
MboI GATC 3 cut(s) 167, 420, 619
MboII GAAGA 3 cut(s) 94, 454, 457
MflI RGATCY 2 cut(s) 167, 420
MhlI GDGCHC 1 cut(s) 713
MluCI AATT 3 cut(s) 85, 342, 428
MseI TTAA 4 cut(s) 161, 297, 414, 844
MspI CCGG 3 cut(s) 353, 445, 487
MspR9I CCNGG 2 cut(s) 97, 354
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 2 cut(s) 507, 789
MwoI GCNNNNNNNGC 1 cut(s) 839
NciI CCSGG 1 cut(s) 354
NdeII GATC 3 cut(s) 167, 420, 619
NlaIII CATG 5 cut(s) 39, 73, 128, 287, 385
NmeAIII GCCGAG 3 cut(s) 96, 353, 420
NmuCI GTSAC 1 cut(s) 570
NspI RCATGY 3 cut(s) 39, 128, 385
PaeI GCATGC 1 cut(s) 39
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 819
PcsI WCGNNNNNNNCGW 1 cut(s) 786
PfeI GAWTC 2 cut(s) 287, 690
PkrI GCNGC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 2 cut(s) 93, 350
PsuI RGATCY 2 cut(s) 167, 420
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SaqAI TTAA 4 cut(s) 161, 297, 414, 844
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 3 cut(s) 167, 420, 619
Sau96I GGNCC 2 cut(s) 93, 350
ScrFI CCNGG 2 cut(s) 97, 354
SduI GDGCHC 1 cut(s) 713
SetI ASST 5 cut(s) 330, 567, 660, 706, 844
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 821
SphI GCATGC 1 cut(s) 39
Sse9I AATT 3 cut(s) 85, 342, 428
SseBI AGGCCT 1 cut(s) 819
SsiI CCGC 6 cut(s) 39, 128, 184, 505, 549, 766
SspMI CTAG 1 cut(s) 600
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 2 cut(s) 95, 352
TaaI ACNGT 2 cut(s) 518, 806
TaqI TCGA 4 cut(s) 472, 631, 638, 811
TaqII GACCGA 1 cut(s) 732
TasI AATT 3 cut(s) 85, 342, 428
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 287, 690
Tru1I TTAA 4 cut(s) 161, 297, 414, 844
Tru9I TTAA 4 cut(s) 161, 297, 414, 844
TseFI GTSAC 1 cut(s) 570
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 3 cut(s) 58, 237, 272
TspGWI ACGGA 2 cut(s) 400, 537
XapI RAATTY 3 cut(s) 85, 342, 428
XceI RCATGY 3 cut(s) 39, 128, 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.