Rroxscaffold_5G00385820

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019519
Physical Location & Seq
Reverse (-)
64799328 .. 64799704
377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385820.1

Sequence Viewer

Length: 288 bp
ATGAACTTGATTCACGACTTCGCCTCCGAGAAGTCTCGTGGAGATGAAGAGTGGTCGGCCGAAGAAGAGGAAAACTCCGGTTTGACATCACGGAGTCGAAGGCAGGATGCGAAGAGAACGAAGAAGGGAGAAGATCTTTCACAACTCTTTGAGGCAATTGAAAAATCAAAAATTTCAGTTGTCATTCTTTCAAGTAACTATGCTTCTTCGACATGGTGTTTGAGAGGAGTTGCCAAGATTGCCGAATGCAGAAATAAGACCGACTCATCGCTTTGCCGTATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

95

Amino Acids

10.73

Weight (kDa)

6.59

Isoelectric Point (pI)

77.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 38 - 88 2.8e-12 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 171
AgsI TTSAA 2 cut(s) 161, 192
Alw26I GTCTC 1 cut(s) 39
AoxI GGCC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
BauI CACGAG 1 cut(s) 36
BceAI ACGGC 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 39
BglII AGATCT 1 cut(s) 133
BmsI GCATC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
BseGI GGATG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 240
BseX3I CGGCCG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 133
BspANI GGCC 1 cut(s) 59
BssMI GATC 1 cut(s) 133
BssSI CACGAG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 36
Bst6I CTCTTC 3 cut(s) 42, 60, 107
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 133
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 112
CviAII CATG 1 cut(s) 213
CviJI RGCY 1 cut(s) 59
CviKI_1 RGCY 1 cut(s) 59
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 3 cut(s) 42, 60, 107
EarI CTCTTC 3 cut(s) 42, 60, 107
EclXI CGGCCG 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 57
FaeI CATG 1 cut(s) 216
FaiI YATR 2 cut(s) 201, 214
FatI CATG 1 cut(s) 212
FokI GGATG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 216
HinfI GANTC 3 cut(s) 10, 94, 263
HpaII CCGG 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 93, 118
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 216
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 89, 91
LweI GCATC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 7 cut(s) 59, 74, 77, 124, 133, 143, 198
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 133
MluCI AATT 2 cut(s) 156, 171
MlyI GAGTC 2 cut(s) 103, 257
MnlI CCTC 4 cut(s) 34, 61, 145, 218
MspI CCGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 216
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 10
PleI GAGTC 2 cut(s) 102, 257
PpsI GAGTC 2 cut(s) 102, 257
PsuI RGATCY 1 cut(s) 133
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 2 cut(s) 103, 257
SfaNI GCATC 1 cut(s) 97
Sse9I AATT 2 cut(s) 156, 171
TaqI TCGA 2 cut(s) 97, 209
TaqII GACCGA 1 cut(s) 275
TasI AATT 2 cut(s) 156, 171
TfiI GAWTC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 17, 60
TspGWI ACGGA 1 cut(s) 106
XapI RAATTY 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.