Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0019519

Physical Location & Seq

Genomic Coordinates Reverse (-)

13463422 .. 13469301

Gene Structure 5880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAACTTGATTCACGACTTCGCCTCGGAGAAGTCTCGGGGAGATGAAGAGTGGACAGAAAAGGGAGTTTCTACTGTTGGACAAGTGATTGCTCTCTATTTAAGATCAAACCTCAAGGAAGCTTGTGAAATCGGTGAAGATCCTAGCAACCAAGAACATTATGAAGGACATCTAGAACAGAGGACTACTGATGCTACTGATTGTGAGGCTCCCATTGGTGACGCTCAGGAGGTTTCTATGGTTGGGGAGGCTTATGGTCCTGGCGCCATAGTGGTTTTTGAAAAGGACAGAGATTCCCAACATGCTTTTGTTCAACGTCAACCTTTGACTGTAAATGCAGGCAGAGGAAGCAGAGTTTACGCTGGTGGTGTCAAAGGGACGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

128

Amino Acids

13.97

Weight (kDa)

4.73

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019519)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00034470 Rroxscaffold_2G00103410 Rroxscaffold_2G00104950 Rroxscaffold_3G00228960 Rroxscaffold_3G00233360 Rroxscaffold_4G00298290 Rroxscaffold_5G00385820 Rroxscaffold_6G00428120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	281, 314
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	146, 230
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	2 cut(s)	144, 173
BfoI	RGCGCY	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	210, 265
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	104, 139
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	210, 265
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	104, 139
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	76, 331
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	107, 142
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	104, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	230
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	3 cut(s)	122, 209, 251
CviKI_1	RGCY	3 cut(s)	122, 209, 251
DdeI	CTNAG	1 cut(s)	225
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	2 cut(s)	106, 141
DpnII	GATC	2 cut(s)	104, 139
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
FaeI	CATG	1 cut(s)	305
FaiI	YATR	5 cut(s)	162, 239, 255, 269, 303
FatI	CATG	1 cut(s)	301
FspBI	CTAG	2 cut(s)	144, 173
GlaI	GCGC	1 cut(s)	265
HaeII	RGCGCY	1 cut(s)	267
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	2 cut(s)	10, 293
HphI	GGTGA	2 cut(s)	146, 230
Hpy166II	GTNNAC	3 cut(s)	54, 320, 358
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	3 cut(s)	14, 173, 227
Hpy8I	GTNNAC	3 cut(s)	54, 320, 358
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	76, 331
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	104, 139
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	5 cut(s)	212, 246, 273, 324, 348
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	144, 173
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	106, 141
MboI	GATC	2 cut(s)	104, 139
MboII	GAAGA	2 cut(s)	59, 149
MflI	RGATCY	1 cut(s)	139
Mly113I	GGCGCC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	7 cut(s)	34, 122, 174, 199, 223, 241, 338
MseI	TTAA	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	348
NarI	GGCGCC	1 cut(s)	264
NdeII	GATC	2 cut(s)	104, 139
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	2 cut(s)	210, 265
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	10, 293
PluTI	GGCGCC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	210, 265
PspPI	GGNCC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	104, 139
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	5 cut(s)	114, 124, 234, 319, 325
SfaNI	GCATC	1 cut(s)	181
SfoI	GGCGCC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	144, 173
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	76, 331
TaiI	ACGT	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	10, 293
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	17, 60, 177
VpaK11BI	GGWCC	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	2 cut(s)	144, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.