Rroxscaffold_1G00040340

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018892
Physical Location & Seq
Reverse (-)
58005368 .. 58009536
4169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040340.1

Sequence Viewer

Length: 864 bp
ATGGGACAATGCCACATGCAAACTTCTGACGGTGTTGTTGCTGCTGGTATCAAGCAAGTCAGATTCAATCGACCTTTTGATGTATCTCTGCTCCTTGATTTGCTGGATACGTATATATCCTTTAGTGATTACCGTTTGCAAACTCTTTCTCTCACAAACAAAGCCTTACTAAACCATGATGACTACTCTTTTCACAATTTTCCTCTTCCTCATTCCCATATACCTTCTCCTAAAGAGAAGAAAAAAATCATCAGAAAGACTTCCCCAGGCTCATTAGGACTGCCCCTAATAGGCCAGAGCCTCGGTCTTCTCCGAGCCTTGCGTGCCAACACTGCTGAGAAATGGCTAGAACAAAGGGTCAAAAAATACGGTCCAGTTTTGAAGCTAAGTCTATTTGGCAAGCCAACAGTCTTCATCCACGGACAAGCTGCAAACAAGTTTTTATTCACCAGTGATGGGAGCACTATTTCCGCCAAACAACCTGCGTCTATTAGTAGGATTTTGGGGGAACGGAATATATCCGAGCTAAGTGCTGAGGATCACAAACGTGTCAGAAGTGCTCTTATGCTATTCTTGAAGCCTGAGTCGCTGAAACAATATGTGTGGAAAATGGATGAAGAAAACAGGAAGCACCTTGAGATGCACTGGCATGGCAAACAACAAGTAACAGCATCAAGCCCTCACTCTACCCTATCGGTACTAGAGGCATCAAGCCCTCATGCTACCCGGGGCCATGCCATCGGTGCGGAGGTCAAAGCCACCGGATACCCCAAAGAGGTTAGAAGGCTCAATCTCTCATTCTACCGGGGCCACGCCACCGGTACCGGGAGGCATACGGACCCTCATTCAACCCCATTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

287

Amino Acids

32.04

Weight (kDa)

9.91

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018892)

Species Orthologous Gene IDs
malus_domestica MD03G1183000.v1.1 MD03G1204900.v1.1
rosa_multiflora Rmu_ssc0000410.1_g000039
rosa_roxburghii Rroxscaffold_1G00040340 Rroxscaffold_1G00041970
rosa_rugosa Rorug05G0176700
rosa_samantha Rh5BG268000 Rh5DG274800 Rh5DG275800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 490
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 821
AciI CCGC 2 cut(s) 471, 746
AclWI GGATC 1 cut(s) 546
AfaI GTAC 2 cut(s) 699, 823
AfiI CCNNNNNNNGG 4 cut(s) 290, 456, 775, 825
AflIII ACRYGT 1 cut(s) 547
AgeI ACCGGT 1 cut(s) 818
AgsI TTSAA 4 cut(s) 67, 382, 577, 849
AjnI CCWGG 1 cut(s) 265
AleI CACNNNNGTG 1 cut(s) 546
AluBI AGCT 3 cut(s) 385, 428, 526
AluI AGCT 3 cut(s) 385, 428, 526
Alw21I GWGCWC 2 cut(s) 464, 562
AlwI GGATC 1 cut(s) 546
Ama87I CYCGRG 1 cut(s) 726
AoxI GGCC 3 cut(s) 292, 730, 808
ApeKI GCWGC 2 cut(s) 41, 428
AsiGI ACCGGT 1 cut(s) 818
Asp700I GAANNNNTTC 1 cut(s) 259
Asp718I GGTACC 1 cut(s) 821
AspS9I GGNCC 4 cut(s) 371, 730, 808, 838
AsuC2I CCSGG 4 cut(s) 727, 728, 806, 826
AsuHPI GGTGA 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 2 cut(s) 371, 838
BanI GGYRCC 1 cut(s) 821
BbsI GAAGAC 2 cut(s) 299, 403
Bbv12I GWGCWC 2 cut(s) 464, 562
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 28, 415
BccI CCATC 2 cut(s) 449, 746
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 1 cut(s) 267
BciVI GTATCC 2 cut(s) 100, 758
BcnI CCSGG 4 cut(s) 727, 728, 806, 826
BfaI CTAG 2 cut(s) 347, 701
BfuAI ACCTGC 1 cut(s) 490
BfuI GTATCC 2 cut(s) 100, 758
BisI GCNGC 2 cut(s) 42, 429
BlsI GCNGC 2 cut(s) 43, 430
Bme1390I CCNGG 5 cut(s) 267, 727, 728, 806, 826
Bme18I GGWCC 2 cut(s) 371, 838
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 4 cut(s) 371, 730, 808, 838
BmiI GGNNCC 4 cut(s) 731, 809, 823, 840
BmrFI CCNGG 5 cut(s) 267, 727, 728, 806, 826
BmsI GCATC 3 cut(s) 630, 680, 716
BpiI GAAGAC 2 cut(s) 299, 403
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 4 cut(s) 727, 728, 806, 826
BsaAI YACGTR 1 cut(s) 111
BsaJI CCNNGG 6 cut(s) 265, 301, 418, 726, 727, 805
BsaWI WCCGGW 2 cut(s) 761, 818
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 456, 775, 825
Bse118I RCCGGY 1 cut(s) 818
Bse1I ACTGG 3 cut(s) 374, 450, 650
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 6 cut(s) 265, 301, 418, 726, 727, 805
BseGI GGATG 2 cut(s) 414, 619
BseLI CCNNNNNNNGG 4 cut(s) 290, 456, 775, 825
BseMII CTCAG 3 cut(s) 327, 525, 573
BseNI ACTGG 3 cut(s) 374, 450, 650
BseXI GCAGC 2 cut(s) 28, 415
BshFI GGCC 3 cut(s) 294, 732, 810
BshNI GGYRCC 1 cut(s) 821
BshTI ACCGGT 1 cut(s) 818
BsiHKAI GWGCWC 2 cut(s) 464, 562
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 5 cut(s) 727, 762, 805, 819, 825
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 4 cut(s) 290, 456, 775, 825
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 294, 732, 810
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 2 cut(s) 464, 562
Bsp143I GATC 1 cut(s) 538
BspACI CCGC 2 cut(s) 471, 746
BspANI GGCC 3 cut(s) 294, 732, 810
BspCNI CTCAG 3 cut(s) 328, 526, 574
BspLI GGNNCC 4 cut(s) 731, 809, 823, 840
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 821
BsrFI RCCGGY 1 cut(s) 818
BsrI ACTGG 3 cut(s) 374, 450, 650
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 6 cut(s) 265, 301, 418, 726, 727, 805
BssMI GATC 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 4 cut(s) 32, 134, 371, 409
Bst6I CTCTTC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 324, 401
BstDEI CTNAG 5 cut(s) 336, 386, 527, 534, 582
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 2 cut(s) 414, 619
BstKTI GATC 1 cut(s) 541
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 4 cut(s) 323, 332, 586, 743
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 5 cut(s) 265, 725, 726, 804, 824
BstSNI TACGTA 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 28, 415
BstV2I GAAGAC 2 cut(s) 299, 403
BsuI GTATCC 2 cut(s) 100, 758
BsuRI GGCC 3 cut(s) 294, 732, 810
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 2 cut(s) 414, 619
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 3 cut(s) 330, 457, 643
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 324, 401
Cfr10I RCCGGY 1 cut(s) 818
Cfr13I GGNCC 4 cut(s) 371, 730, 808, 838
Cfr9I CCCGGG 1 cut(s) 726
CseI GACGC 1 cut(s) 474
Csp6I GTAC 2 cut(s) 698, 822
CspAI ACCGGT 1 cut(s) 818
CspCI CAANNNNNGTGG 2 cut(s) 584, 619
CviAII CATG 5 cut(s) 16, 176, 650, 719, 734
CviQI GTAC 2 cut(s) 698, 822
DdeI CTNAG 5 cut(s) 336, 386, 527, 534, 582
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 460
Eco105I TACGTA 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 371, 838
Eco88I CYCGRG 1 cut(s) 726
EcoRII CCWGG 1 cut(s) 265
FaeI CATG 5 cut(s) 19, 179, 653, 722, 737
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 15, 175, 649, 718, 733
Fnu4HI GCNGC 2 cut(s) 42, 429
FokI GGATG 2 cut(s) 401, 626
Fsp4HI GCNGC 2 cut(s) 42, 429
FspBI CTAG 2 cut(s) 347, 701
GluI GCNGC 2 cut(s) 42, 429
HaeIII GGCC 3 cut(s) 294, 732, 810
HapII CCGG 5 cut(s) 727, 762, 805, 819, 825
HgaI GACGC 1 cut(s) 474
Hin1II CATG 5 cut(s) 19, 179, 653, 722, 737
HinfI GANTC 2 cut(s) 63, 584
HpaII CCGG 5 cut(s) 727, 762, 805, 819, 825
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 6 cut(s) 28, 62, 254, 314, 523, 554
Hpy188III TCNNGA 1 cut(s) 574
HpyAV CCTTC 2 cut(s) 234, 777
HpyCH4III ACNGT 4 cut(s) 32, 134, 371, 409
HpyCH4IV ACGT 2 cut(s) 110, 547
HpyCH4V TGCA 4 cut(s) 19, 139, 431, 643
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 332, 586, 743
HpyF3I CTNAG 5 cut(s) 336, 386, 527, 534, 582
HpySE526I ACGT 2 cut(s) 110, 547
Hsp92II CATG 5 cut(s) 19, 179, 653, 722, 737
KpnI GGTACC 1 cut(s) 825
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 2 cut(s) 96, 459
Lsp1109I GCAGC 2 cut(s) 28, 415
LweI GCATC 3 cut(s) 630, 680, 716
MaeI CTAG 2 cut(s) 347, 701
MaeII ACGT 2 cut(s) 110, 547
MaeIII GTNAC 1 cut(s) 664
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 5 cut(s) 197, 250, 299, 403, 629
MhlI GDGCHC 2 cut(s) 464, 562
MluCI AATT 1 cut(s) 196
MlyI GAGTC 1 cut(s) 593
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 1 cut(s) 862
MslI CAYNNNNRTG 2 cut(s) 546, 648
MspI CCGG 5 cut(s) 727, 762, 805, 819, 825
MspR9I CCNGG 5 cut(s) 267, 727, 728, 806, 826
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 323, 332, 586, 743
NciI CCSGG 4 cut(s) 727, 728, 806, 826
NdeII GATC 1 cut(s) 538
NlaIII CATG 5 cut(s) 19, 179, 653, 722, 737
NlaIV GGNNCC 4 cut(s) 731, 809, 823, 840
NspI RCATGY 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 63
PinAI ACCGGT 1 cut(s) 818
PkrI GCNGC 2 cut(s) 43, 430
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Ppu21I YACGTR 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 4 cut(s) 731, 809, 823, 840
PspPI GGNCC 4 cut(s) 371, 730, 808, 838
RsaI GTAC 2 cut(s) 699, 823
RsaNI GTAC 2 cut(s) 698, 822
RseI CAYNNNNRTG 2 cut(s) 546, 648
SaqAI TTAA 1 cut(s) 862
SatI GCNGC 2 cut(s) 42, 429
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 4 cut(s) 371, 730, 808, 838
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 5 cut(s) 267, 727, 728, 806, 826
SduI GDGCHC 2 cut(s) 464, 562
SfaNI GCATC 3 cut(s) 630, 680, 716
SinI GGWCC 2 cut(s) 371, 838
SmaI CCCGGG 1 cut(s) 728
SmiMI CAYNNNNRTG 2 cut(s) 546, 648
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
SnaBI TACGTA 1 cut(s) 111
Sse9I AATT 1 cut(s) 196
SsiI CCGC 2 cut(s) 471, 746
SspMI CTAG 2 cut(s) 347, 701
StyD4I CCNGG 5 cut(s) 265, 725, 726, 804, 824
TaaI ACNGT 4 cut(s) 32, 134, 371, 409
TaiI ACGT 2 cut(s) 113, 550
TaqI TCGA 1 cut(s) 70
TaqII GACCGA 1 cut(s) 293
TasI AATT 1 cut(s) 196
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 862
Tru9I TTAA 1 cut(s) 862
TscAI CASTG 3 cut(s) 337, 457, 650
TseI GCWGC 2 cut(s) 41, 428
TspDTI ATGAA 2 cut(s) 403, 630
TspGWI ACGGA 3 cut(s) 435, 526, 851
TspMI CCCGGG 1 cut(s) 726
TspRI CASTG 3 cut(s) 337, 457, 650
VpaK11BI GGWCC 2 cut(s) 371, 838
XceI RCATGY 1 cut(s) 19
XmaI CCCGGG 1 cut(s) 726
XmnI GAANNNNTTC 1 cut(s) 259
XspI CTAG 2 cut(s) 347, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.