Rh5BG268000

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018892
Physical Location & Seq
Reverse (-)
33474990 .. 33475274
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG268000.1

Sequence Viewer

Length: 285 bp
ATGATGACTTTTCTTTTCACAATTTTCCTCTTCCTCATTCCCATATACCTTCTCCTGAAGAGCAGAAGAAAATCATCAGAAAAGCTTCCTCCAGGCTCATTAGGACTGCCTCTAATAGGCCAGAGCCTTGATTTTCTCCGAGCGATGCGTGCCAACACTGCAGAGGATTGGCTTGAACAAAGGATCAGAAAGTATGGTCCAGTTTCAAAGCTAAGTCTCTTTGGCAAGCCAACATGCAGTCTTCATCCATGGACAAGCTGCAAACAAGTTTATATTCACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

94

Amino Acids

10.87

Weight (kDa)

10.02

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018892)

Species Orthologous Gene IDs
malus_domestica MD03G1183000.v1.1 MD03G1204900.v1.1
rosa_multiflora Rmu_ssc0000410.1_g000039
rosa_roxburghii Rroxscaffold_1G00040340 Rroxscaffold_1G00041970
rosa_rugosa Rorug05G0176700
rosa_samantha Rh5BG268000 Rh5DG274800 Rh5DG275800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 176, 207
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 3 cut(s) 85, 211, 258
AluI AGCT 3 cut(s) 85, 211, 258
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 200, 280
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 200, 280
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 248
BspANI GGCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 53
BsrI ACTGG 2 cut(s) 200, 280
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 35, 53
BstC8I GCNNGC 2 cut(s) 150, 227
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 248
BstENI CCTNNNNNAGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 149, 158
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 150, 227
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 2 cut(s) 234, 249
CviJI RGCY 8 cut(s) 85, 96, 120, 126, 172, 211, 229, 258
CviKI_1 RGCY 8 cut(s) 85, 96, 120, 126, 172, 211, 229, 258
DdeI CTNAG 1 cut(s) 212
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 35, 53
EarI CTCTTC 2 cut(s) 35, 53
Eco130I CCWWGG 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 237, 252
FaiI YATR 6 cut(s) 44, 46, 195, 235, 250, 273
FatI CATG 2 cut(s) 233, 248
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 259
GluI GCNGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 120
Hin1II CATG 2 cut(s) 237, 252
HindIII AAGCTT 1 cut(s) 83
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 79, 140, 188
Hpy188III TCNNGA 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 161, 237, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 158
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 2 cut(s) 237, 252
Kzo9I GATC 1 cut(s) 183
LguI GCTCTTC 1 cut(s) 53
LpnPI CCDG 5 cut(s) 68, 78, 105, 134, 213
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 135
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 4 cut(s) 22, 70, 78, 233
MluCI AATT 1 cut(s) 21
MnlI CCTC 5 cut(s) 38, 44, 99, 120, 157
MroXI GAANNNNTTC 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 149, 158
NcoI CCATGG 1 cut(s) 248
NdeII GATC 1 cut(s) 183
NlaIII CATG 2 cut(s) 237, 252
NspI RCATGY 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 53
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 93
SetI ASST 4 cut(s) 51, 87, 213, 260
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 197
Sse9I AATT 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 248
TasI AATT 1 cut(s) 21
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 114
XceI RCATGY 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.