Rh5DG274800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018892
Physical Location & Seq
Reverse (-)
33643601 .. 33650862
7262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG274800.1

Sequence Viewer

Length: 276 bp
ATGGGACAATGCCACATGCAAACTTCTGCCGGTGTTGTTGCTGCTGGTATCAAGCAAGTCAGATTCAATCGACCTTTTGATAGCAGAGAAAAATCATCAGAAAGGCTTCCTCGAGGCTCGTTAGGACTGCCCCTAATAGGCCAAAGCCTTGATTTTCTCCGAGCGATGAGTGCCAACACTGCAGAGGATTGGCTTGAACAAAGGATCAGAAAGTATGGTCCAGTTTCAAAGCTAAGTCTCTTTGGCAAGCCAACAGTCTTCATCCATGGACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

91

Amino Acids

10.1

Weight (kDa)

10.27

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018892)

Species Orthologous Gene IDs
malus_domestica MD03G1183000.v1.1 MD03G1204900.v1.1
rosa_multiflora Rmu_ssc0000410.1_g000039
rosa_roxburghii Rroxscaffold_1G00040340 Rroxscaffold_1G00041970
rosa_rugosa Rorug05G0176700
rosa_samantha Rh5BG268000 Rh5DG274800 Rh5DG275800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 111
AclWI GGATC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 3 cut(s) 67, 197, 228
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 111
Bsp143I GATC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 265
BspANI GGCC 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 233
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 170, 179
BstNSI RCATGY 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 261
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 218
CviAII CATG 2 cut(s) 16, 266
CviJI RGCY 7 cut(s) 106, 117, 141, 147, 193, 232, 250
CviKI_1 RGCY 7 cut(s) 106, 117, 141, 147, 193, 232, 250
DdeI CTNAG 1 cut(s) 233
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 2 cut(s) 19, 269
FaiI YATR 3 cut(s) 17, 216, 267
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 15, 265
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 30
Hin1II CATG 2 cut(s) 19, 269
HinfI GANTC 1 cut(s) 63
HpaII CCGG 1 cut(s) 30
Hpy188I TCNGA 4 cut(s) 62, 100, 161, 209
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 19, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 179
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 2 cut(s) 19, 269
Kzo9I GATC 1 cut(s) 204
LpnPI CCDG 3 cut(s) 30, 43, 234
Lsp1109I GCAGC 1 cut(s) 28
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 1 cut(s) 250
MnlI CCTC 3 cut(s) 107, 120, 178
MroXI GAANNNNTTC 1 cut(s) 105
MspI CCGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 170, 179
NcoI CCATGG 1 cut(s) 265
NdeII GATC 1 cut(s) 204
NlaIII CATG 2 cut(s) 19, 269
NspI RCATGY 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 218
PspXI VCTCGAGB 1 cut(s) 111
PstI CTGCAG 1 cut(s) 184
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 218
SetI ASST 2 cut(s) 76, 234
SfcI CTRYAG 1 cut(s) 180
Sfr274I CTCGAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 70, 112
TfiI GAWTC 1 cut(s) 63
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 218
XceI RCATGY 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.