Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018892

Physical Location & Seq

Genomic Coordinates Forward (+)

59968507 .. 59970194

Gene Structure 1688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGACAATGCCACATGCAAACTTCTGACGGTGTTGTTGCTGCTGGTATCAAGCAAGTCAGATTCAATCGACCTTTTGATGTATCTCTGCTCCTTGATTTGCTGGATACGTATATATCCTTTAGTGATTACCGTTTGCAAACTCTTTCTCTCACAAACAAAGCCTTACTAAACCATGATGACTACTCTTTTCACAATTTTCCTCTTCCTCATTCCCATATACCTTCTCCTAAAGAGAAGAAAAAAATCATCAGAAAGACTTCCCCAGGCTCATTAGGACTGCCCCTAATAGGCCAGAGCCTCGGTCTTCTCCGAGCCTTGCGTGCCAGCACTGCTGAGAAATGGCTAGAACAAAGGGTCAAAAAATACGGTCCAGTTTTGAAGCTAAGTCTATTTGGCAAGCCAACAGTCTTCATCCACGGACAAGCTGCAAACAAGTTTATATTCACCAGTGATGGGAGCACTATTTCCGCCAAACAACCAGCGTCTATTAGTAGGATTTTGGGGGAACGGAATATATCCGAGCTAAGTGCTGAGGATCACAAACGTGTCAGAAGTGCTCTTATGCTATTCTTGAAGCCTGAGTCGCTGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

199

Amino Acids

22.21

Weight (kDa)

9.96

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018892)

Species	Orthologous Gene IDs
malus_domestica	MD03G1183000.v1.1 MD03G1204900.v1.1
rosa_multiflora	Rmu_ssc0000410.1_g000039
rosa_roxburghii	Rroxscaffold_1G00040340 Rroxscaffold_1G00041970
rosa_rugosa	Rorug05G0176700
rosa_samantha	Rh5BG268000 Rh5DG274800 Rh5DG275800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	471
AclWI	GGATC	1 cut(s)	546
AfiI	CCNNNNNNNGG	2 cut(s)	290, 456
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	3 cut(s)	67, 382, 577
AjnI	CCWGG	1 cut(s)	265
AleI	CACNNNNGTG	1 cut(s)	546
AluBI	AGCT	3 cut(s)	385, 428, 526
AluI	AGCT	3 cut(s)	385, 428, 526
Alw21I	GWGCWC	2 cut(s)	464, 562
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	41, 428
Asp700I	GAANNNNTTC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	371
BbsI	GAAGAC	2 cut(s)	299, 403
Bbv12I	GWGCWC	2 cut(s)	464, 562
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	2 cut(s)	28, 415
BccI	CCATC	1 cut(s)	449
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	42, 429
BlsI	GCNGC	2 cut(s)	43, 430
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	299, 403
Bpu10I	CCTNAGC	1 cut(s)	534
BsaAI	YACGTR	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	265, 301, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 456
Bse1I	ACTGG	2 cut(s)	374, 450
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	265, 301, 418
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	290, 456
BseMII	CTCAG	3 cut(s)	327, 525, 573
BseNI	ACTGG	2 cut(s)	374, 450
BseXI	GCAGC	2 cut(s)	28, 415
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	464, 562
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	290, 456
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	464, 562
Bsp143I	GATC	1 cut(s)	538
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	3 cut(s)	328, 526, 574
BspPI	GGATC	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	374, 450
BssECI	CCNNGG	3 cut(s)	265, 301, 418
BssMI	GATC	1 cut(s)	538
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	4 cut(s)	32, 134, 371, 409
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	324, 328, 401
BstDEI	CTNAG	5 cut(s)	336, 386, 527, 534, 582
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	1 cut(s)	541
BstMBI	GATC	1 cut(s)	538
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 332, 586
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	265
BstSNI	TACGTA	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	28, 415
BstV2I	GAAGAC	2 cut(s)	299, 403
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	330, 457
Cac8I	GCNNGC	3 cut(s)	324, 328, 401
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	474
CviAII	CATG	2 cut(s)	16, 176
DdeI	CTNAG	5 cut(s)	336, 386, 527, 534, 582
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	460
Eco105I	TACGTA	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	265
FaeI	CATG	2 cut(s)	19, 179
FaiI	YATR	9 cut(s)	17, 114, 116, 177, 219, 221, 443, 518, 566
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	15, 175
Fnu4HI	GCNGC	2 cut(s)	42, 429
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	2 cut(s)	42, 429
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	2 cut(s)	42, 429
HaeIII	GGCC	1 cut(s)	294
HgaI	GACGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	19, 179
HinfI	GANTC	2 cut(s)	63, 584
HphI	GGTGA	1 cut(s)	439
Hpy188I	TCNGA	6 cut(s)	28, 62, 254, 314, 523, 554
Hpy188III	TCNNGA	1 cut(s)	574
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	4 cut(s)	32, 134, 371, 409
HpyCH4IV	ACGT	2 cut(s)	110, 547
HpyCH4V	TGCA	3 cut(s)	19, 139, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 332, 586
HpyF3I	CTNAG	5 cut(s)	336, 386, 527, 534, 582
HpySE526I	ACGT	2 cut(s)	110, 547
Hsp92II	CATG	2 cut(s)	19, 179
Kzo9I	GATC	1 cut(s)	538
LmnI	GCTCC	2 cut(s)	96, 459
Lsp1109I	GCAGC	2 cut(s)	28, 415
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	2 cut(s)	110, 547
MalI	GATC	1 cut(s)	540
MboI	GATC	1 cut(s)	538
MboII	GAAGA	4 cut(s)	197, 250, 299, 403
MhlI	GDGCHC	2 cut(s)	464, 562
MluCI	AATT	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	593
MnlI	CCTC	4 cut(s)	213, 219, 311, 529
MroXI	GAANNNNTTC	1 cut(s)	259
MslI	CAYNNNNRTG	1 cut(s)	546
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	3 cut(s)	323, 332, 586
NdeII	GATC	1 cut(s)	538
NlaIII	CATG	2 cut(s)	19, 179
NspI	RCATGY	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	43, 430
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	546
SatI	GCNGC	2 cut(s)	42, 429
Sau3AI	GATC	1 cut(s)	538
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	2 cut(s)	464, 562
SetI	ASST	7 cut(s)	76, 113, 226, 387, 430, 528, 550
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	546
SnaBI	TACGTA	1 cut(s)	111
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	471
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	4 cut(s)	32, 134, 371, 409
TaiI	ACGT	2 cut(s)	113, 550
TaqI	TCGA	1 cut(s)	70
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	63
TscAI	CASTG	2 cut(s)	337, 457
TseI	GCWGC	2 cut(s)	41, 428
TspDTI	ATGAA	1 cut(s)	403
TspGWI	ACGGA	2 cut(s)	435, 526
TspRI	CASTG	2 cut(s)	337, 457
VpaK11BI	GGWCC	1 cut(s)	371
XceI	RCATGY	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	259
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.