Rorug05G0176700

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018892
Physical Location & Seq
Forward (+)
16544016 .. 16544888
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0176700.1

Sequence Viewer

Length: 873 bp
ATGGAAAGACGGGAGGTGAATGAGAGAGGAGTTGTGGATGAAAGGGTAGACGTGCAAGGTAGTTTACTTGTGCAAGGGCAAGATATGCATGAGTTGAACGTGCATGGCAGTGAAGGGGGTAGGTTGAATGTGCATGGAGGAGGTTTGACCTTGCATGGGAGGGGGTTGAGTGTGAATGGAGTGGGGCCGAATATGCATGGGGTGGGATTGAACTTGCATGGGAGGGGGTTGCCGGTGCATGGTAGGGGGAGTGTGAATGCTAGGGAAAGAAGGGGAGGTGGGGCCGGAGAGTATGGGTGGCAGCCTCCAAGGAGAGGTTGTTTGAAACTGAACTGTGATGGTGCAGCCTCTGATAGTGCAAATCGATATGGTGTTGGTTTTGTTGTGAGGTGCGAATTGGGGACTATCGTGGTGGCTGCTGGGCAAAGGATTGTGTATCCAGTTTCAGCTTTGGTGTCGGAGTTGCTAGCTATTAAAGGAGGATTGGAGATGGTGAAGGAAAGAGGTTTACGTGATGTGGAAGTGGAGACTGATTGTCTGGGAGCTGTACAGCTTATTAACAAACAGGAAAAATGTTTTGCGGCCGAAGGTATTATCGTGGAAGAGATCCAGACTCTGTTAAGAGACCTCCAGATCTCTGTGGTTAAGCATACGTCGCGGGACAATAATAAGGCAGCCCATGCAATTGCAAGCTTTGTAGCCCGAGAGGAAGGGCGAGTATTATGGTTAGAGGATGGGCCTTCTTGGCTCATGTCCATCACCGAGAGTGAGAGGCCTTTAACCGAGGTAGAAGAGAGGGAAATGAGTAGTGTTTGTATCCCTAGTGTGTTGGGTGATACTGAGGCTACACCGGGTCATTCCCGAATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

290

Amino Acids

31.28

Weight (kDa)

5.84

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 111 - 232 8e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018892)

Species Orthologous Gene IDs
malus_domestica MD03G1183000.v1.1 MD03G1204900.v1.1
rosa_multiflora Rmu_ssc0000410.1_g000039
rosa_roxburghii Rroxscaffold_1G00040340 Rroxscaffold_1G00041970
rosa_rugosa Rorug05G0176700
rosa_samantha Rh5BG268000 Rh5DG274800 Rh5DG275800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 658
AciI CCGC 2 cut(s) 581, 658
AclWI GGATC 1 cut(s) 601
AcoI YGGCCR 1 cut(s) 582
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 3 cut(s) 156, 239, 314
AgsI TTSAA 4 cut(s) 97, 127, 211, 325
AhdI GACNNNNNGTC 1 cut(s) 534
AjiI CACGTC 1 cut(s) 52
AluBI AGCT 5 cut(s) 449, 470, 545, 553, 693
AluI AGCT 5 cut(s) 449, 470, 545, 553, 693
Alw26I GTCTC 2 cut(s) 521, 618
AlwI GGATC 1 cut(s) 601
AlwNI CAGNNNCTG 2 cut(s) 350, 616
Ama87I CYCGRG 1 cut(s) 702
AoxI GGCC 5 cut(s) 185, 282, 582, 737, 773
ApeKI GCWGC 4 cut(s) 301, 344, 416, 674
AspS9I GGNCC 3 cut(s) 185, 282, 737
AsuC2I CCSGG 1 cut(s) 852
AsuHPI GGTGA 4 cut(s) 28, 505, 751, 845
AsuNHI GCTAGC 1 cut(s) 466
AvaI CYCGRG 1 cut(s) 702
BbvI GCAGC 4 cut(s) 313, 356, 403, 686
BccI CCATC 4 cut(s) 332, 484, 728, 764
BciVI GTATCC 2 cut(s) 447, 827
BcnI CCSGG 1 cut(s) 852
BcoDI GTCTC 2 cut(s) 521, 618
BfaI CTAG 3 cut(s) 261, 467, 822
BfuI GTATCC 2 cut(s) 447, 827
BglI GCCNNNNNGGC 1 cut(s) 745
BglII AGATCT 1 cut(s) 633
BisI GCNGC 5 cut(s) 302, 345, 417, 582, 675
BlsI GCNGC 5 cut(s) 303, 346, 418, 583, 676
Bme1390I CCNGG 1 cut(s) 852
BmeRI GACNNNNNGTC 1 cut(s) 534
BmeT110I CYCGRG 1 cut(s) 702
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 185, 282, 737
BmiI GGNNCC 2 cut(s) 186, 283
BmrFI CCNGG 1 cut(s) 852
BmtI GCTAGC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 614
BpuMI CCSGG 1 cut(s) 852
Bsa29I ATCGAT 1 cut(s) 364
BsaAI YACGTR 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 308, 783
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 239, 314
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 440
BseCI ATCGAT 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 308, 783
BseGI GGATG 2 cut(s) 43, 739
BseLI CCNNNNNNNGG 3 cut(s) 156, 239, 314
BseMII CTCAG 1 cut(s) 831
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 2 cut(s) 42, 153
BseX3I CGGCCG 1 cut(s) 582
BseXI GCAGC 4 cut(s) 313, 356, 403, 686
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 658
Bsh1285I CGRYCG 1 cut(s) 585
BshFI GGCC 5 cut(s) 187, 284, 584, 739, 775
BshVI ATCGAT 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 585
BsiHKCI CYCGRG 1 cut(s) 702
BsiSI CCGG 3 cut(s) 233, 285, 851
BslFI GGGAC 2 cut(s) 415, 674
BslI CCNNNNNNNGG 3 cut(s) 156, 239, 314
BsmAI GTCTC 2 cut(s) 521, 618
BsmFI GGGAC 2 cut(s) 415, 674
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 5 cut(s) 187, 284, 584, 739, 775
Bso31I GGTCTC 1 cut(s) 618
BsoBI CYCGRG 1 cut(s) 702
Bsp1407I TGTACA 1 cut(s) 547
Bsp143I GATC 2 cut(s) 606, 633
BspACI CCGC 2 cut(s) 581, 658
BspANI GGCC 5 cut(s) 187, 284, 584, 739, 775
BspCNI CTCAG 1 cut(s) 832
BspDI ATCGAT 1 cut(s) 364
BspFNI CGCG 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 186, 283
BspOI GCTAGC 1 cut(s) 470
BspPI GGATC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 232
BsrGI TGTACA 1 cut(s) 547
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 308, 783
BssMI GATC 2 cut(s) 606, 633
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 2 cut(s) 597, 786
BstAPI GCANNNNNTGC 2 cut(s) 85, 680
BstAUI TGTACA 1 cut(s) 547
BstBAI YACGTR 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 468, 691
BstDEI CTNAG 1 cut(s) 840
BstF5I GGATG 2 cut(s) 43, 739
BstFNI CGCG 1 cut(s) 658
BstKTI GATC 2 cut(s) 609, 636
BstMAI GTCTC 2 cut(s) 521, 618
BstMBI GATC 2 cut(s) 606, 633
BstMCI CGRYCG 1 cut(s) 585
BstMWI GCNNNNNNNGC 5 cut(s) 85, 193, 655, 680, 745
BstSCI CCNGG 1 cut(s) 850
BstUI CGCG 1 cut(s) 658
BstV1I GCAGC 4 cut(s) 313, 356, 403, 686
BstX2I RGATCY 2 cut(s) 606, 633
BstYI RGATCY 2 cut(s) 606, 633
BstZI CGGCCG 1 cut(s) 582
Bsu15I ATCGAT 1 cut(s) 364
BsuI GTATCC 2 cut(s) 447, 827
BsuRI GGCC 5 cut(s) 187, 284, 584, 739, 775
BsuTUI ATCGAT 1 cut(s) 364
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 2 cut(s) 43, 739
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 468, 691
CaiI CAGNNNCTG 2 cut(s) 350, 616
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 3 cut(s) 185, 282, 737
ClaI ATCGAT 1 cut(s) 364
Csp6I GTAC 1 cut(s) 548
CviAII CATG 9 cut(s) 89, 104, 134, 155, 197, 218, 239, 680, 751
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 1 cut(s) 840
DpnI GATC 2 cut(s) 608, 635
DpnII GATC 2 cut(s) 606, 633
DriI GACNNNNNGTC 1 cut(s) 534
EaeI YGGCCR 1 cut(s) 582
EagI CGGCCG 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 597, 786
Eam1105I GACNNNNNGTC 1 cut(s) 534
EarI CTCTTC 2 cut(s) 597, 786
EclXI CGGCCG 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 775
Eco31I GGTCTC 1 cut(s) 618
Eco52I CGGCCG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 308
EcoT22I ATGCAT 2 cut(s) 90, 198
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 9 cut(s) 92, 107, 137, 158, 200, 221, 242, 683, 754
FaqI GGGAC 2 cut(s) 415, 674
FatI CATG 9 cut(s) 88, 103, 133, 154, 196, 217, 238, 679, 750
FauI CCCGC 1 cut(s) 651
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 5 cut(s) 302, 345, 417, 582, 675
FokI GGATG 2 cut(s) 50, 746
Fsp4HI GCNGC 5 cut(s) 302, 345, 417, 582, 675
FspBI CTAG 3 cut(s) 261, 467, 822
GluI GCNGC 5 cut(s) 302, 345, 417, 582, 675
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 614
HaeIII GGCC 5 cut(s) 187, 284, 584, 739, 775
HapII CCGG 3 cut(s) 233, 285, 851
Hin1II CATG 9 cut(s) 92, 107, 137, 158, 200, 221, 242, 683, 754
HindIII AAGCTT 1 cut(s) 691
HinfI GANTC 1 cut(s) 613
HpaII CCGG 3 cut(s) 233, 285, 851
HphI GGTGA 4 cut(s) 28, 505, 751, 845
Hpy166II GTNNAC 3 cut(s) 49, 65, 509
Hpy188I TCNGA 2 cut(s) 352, 460
Hpy188III TCNNGA 3 cut(s) 610, 631, 861
Hpy8I GTNNAC 3 cut(s) 49, 65, 509
Hpy99I CGWCG 1 cut(s) 658
HpyAV CCTTC 6 cut(s) 107, 264, 490, 581, 704, 750
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 4 cut(s) 51, 99, 511, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 193, 655, 680, 745
HpyF3I CTNAG 1 cut(s) 840
HpySE526I ACGT 4 cut(s) 51, 99, 511, 653
Hsp92II CATG 9 cut(s) 92, 107, 137, 158, 200, 221, 242, 683, 754
Kzo9I GATC 2 cut(s) 606, 633
LmnI GCTCC 1 cut(s) 542
LpnPI CCDG 9 cut(s) 246, 298, 405, 453, 524, 551, 623, 644, 864
Lsp1109I GCAGC 4 cut(s) 313, 356, 403, 686
MaeI CTAG 3 cut(s) 261, 467, 822
MaeII ACGT 4 cut(s) 51, 99, 511, 653
MalI GATC 2 cut(s) 608, 635
MboI GATC 2 cut(s) 606, 633
MboII GAAGA 2 cut(s) 614, 803
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 606, 633
MluCI AATT 3 cut(s) 395, 684, 864
MlyI GAGTC 1 cut(s) 607
MmeI TCCRAC 1 cut(s) 438
Mph1103I ATGCAT 2 cut(s) 90, 198
MseI TTAA 5 cut(s) 474, 558, 620, 645, 779
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 3 cut(s) 233, 285, 851
MspR9I CCNGG 1 cut(s) 852
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 262
MvnI CGCG 1 cut(s) 658
MwoI GCNNNNNNNGC 5 cut(s) 85, 193, 655, 680, 745
NciI CCSGG 1 cut(s) 852
NdeII GATC 2 cut(s) 606, 633
NheI GCTAGC 1 cut(s) 466
NlaIII CATG 9 cut(s) 92, 107, 137, 158, 200, 221, 242, 683, 754
NlaIV GGNNCC 2 cut(s) 186, 283
NsiI ATGCAT 2 cut(s) 90, 198
PceI AGGCCT 1 cut(s) 775
PctI GAATGC 1 cut(s) 262
PkrI GCNGC 5 cut(s) 303, 346, 418, 583, 676
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Ppu21I YACGTR 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 2 cut(s) 186, 283
PspPI GGNCC 3 cut(s) 185, 282, 737
PstNI CAGNNNCTG 2 cut(s) 350, 616
PsuI RGATCY 2 cut(s) 606, 633
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 5 cut(s) 474, 558, 620, 645, 779
SatI GCNGC 5 cut(s) 302, 345, 417, 582, 675
Sau3AI GATC 2 cut(s) 606, 633
Sau96I GGNCC 3 cut(s) 185, 282, 737
SchI GAGTC 1 cut(s) 607
ScrFI CCNGG 1 cut(s) 852
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 3 cut(s) 395, 684, 864
SseBI AGGCCT 1 cut(s) 775
SsiI CCGC 2 cut(s) 581, 658
SspMI CTAG 3 cut(s) 261, 467, 822
StuI AGGCCT 1 cut(s) 775
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 4 cut(s) 54, 102, 514, 656
TaqI TCGA 1 cut(s) 364
TasI AATT 3 cut(s) 395, 684, 864
TatI WGTACW 1 cut(s) 547
TauI GCSGC 1 cut(s) 584
Tru1I TTAA 5 cut(s) 474, 558, 620, 645, 779
Tru9I TTAA 5 cut(s) 474, 558, 620, 645, 779
TscAI CASTG 1 cut(s) 115
TseI GCWGC 4 cut(s) 301, 344, 416, 674
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 3 cut(s) 261, 467, 822
Zsp2I ATGCAT 2 cut(s) 90, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.