Rroxscaffold_2G00089030

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014776
Physical Location & Seq
Reverse (-)
10899102 .. 10903917
4816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089030.1

Sequence Viewer

Length: 2811 bp
ATGGGTATTGGAATTCTGAACCCAATCCTTTATCTTTTAAGCACTGGTTTTTGTGATGGAGATTTTGCTGAGAAAAGCAAGAAGTGGGTGGGAAAGTCATCTAAGAGCAGTGCTAGTGTCGCCTCTCCACCTGCATCACATGAGCATCGGAATTCTTTACCCAATCCTCTGTCTTTGAGCTCCGGCGTACCTGATGGAATTATTGCTGAGAAAAAGAAGAAGAAGATGATGAAGAAAAAGAGGGTTGGAAAGTCATCTCAGAGCAGTGGTGGTGGTGTAGCCTCTCCATCTGTATCACATGGGAATGAGGTTTCCGAAGATTCAACGGTCCACATTTCCAAGAAACTTTCGTCTCCTGATCATACTCAGAACAGCTTATCAGTTGGAATGCAGAGTTCTGATTACTGTTCAAAGATAAGCAAACAAGGGTCTGATGAATTAAGCAGTACTAGTGTTGTTGAGGATGTTGTAGTTCAGTGTAACAAACAAGTTGAACTTGAAGATTCCAAGAATCAAAGCCACACAGGTTGCACTTACAATGGAAAAGAAAACAGGCATTTTGGTTGGAACAGGAGGCAGTACAATGGCAGGGACGGACATGTGAATTGGGGGAAGAAACCAAGTTACAGAAATGGTGTGAAAGATGTTAACCCGGCAGAGAATCGTTTTGCGGATGAGCGTAGCTCATTAGCTAATGATGGTATCTTACCTTCTCCGTTGATTTCATCTGGATACAACAATGGAAAAGAAAATAGGCATATTGGTTGGAACAGGAAGCAGTACAATGCTAGGGAAGGACATGTGAATTGGGGGAAGAAACCAAGTTACAGAAATGGTGTGAAAGATCTTAACCTTGCAGAGAATCGTTTTTGGTCTGAGCGGAATTCATTAGCCAATGATGCCATCTCACCTACTCCGTCGAATTCCTCTGGACACAAAAATGCTGCTTATGAATATAGAAAAAGGGATGCCCCTCCAAGACTATTGAATGAGTCATCACAGGGGGCTGCTTCTCCACAGAGGTTGAATGGGACACTTTTTGTTTCAGTAAAAAGTCAAACGGAAGGCTTGGAAAGTGACTCTGAAAAATTAGTAGGAAGATCACCTAATTCAATTAAGCCTGTGAATTGCAATATGAAAAAAGGACCCCGCAATTATGAAGCAGTCTTCTCTGAGTTACATGGTAAGTGTAAACAATTGTCAATGGGTTGTTTTGATAGGCATGATTACAAGAGAGATGCTGCAGGAACAAATGGCAAGCAGATTGCAAGTCATGGTGATCGACACTGTTTATCCTCACCTTCCATGTATTCTAAAATGTCTACTGAGGGAGTGATGAATGGTATTCAACAACACAAATTCAGGAAGATACCAAGCATGGAACATGAGTTTGGTAAGTTGGTACATGTATCCTTGGACGGTATACCATGCTTTCATACTGATCATAAACTTGAGAAAGATACTTCTGGAGCAAATATTATGGAGCGGACAGCTGTTGGTACAAAAGAGTTCAGGCCAGTGAACAGAATTTCATCTGCCAGTATCTCCAATGAGTTCAATCTCTTACCAGATTTAAGCTGGGAGTTAAATAATGGCCATCTGGGAGGAAACACAATATCCTGCAATCAACTGATTTCTTATGATGATCCAAAGGTTTATCAGTCTGCTGCTGAAATAGGTCAAAAAATAGAAAGAAAAGGTTATGATGCAAAGAATAGAGGACCCAAGGACCCTGACCAATTTCTAATTGGTTCAAATATGGGAATGAAAGCTCTAAATGCTGCTTACCAAATGCAATTAGCATCTGAAACTGTTCAGCTCGCAATGGGTTCTCCACTTGCAGAGTTTGAAACATTCATCCACTGCGCTGTTCCTGTTATTCCTTCTTCATCTGTACATAAAGAATACTCTGTTTCCTTGGGTACTCAGCCATCTCACGGTTTACTATCCAAGCACCAGATACCCAATGTATCACTTCACAGTGTTTGGAACTGGTATGAGATACCAGGGAATTATGGGTTGGATGTCAAGGCAGTTTGTCCTAAAACCCTCACTGGCCTTCCAAATGATTCAATGTCATTCCAAGCCTATTTTGTTCCTTCCCTTTCTGCTATTCAATTGTTTGGACCACACATCCCTGGTTGCGAAAGATCATCTTCCAATTCTTCAGAAGCAGTACATCTCAACCATATTCGGGTTGGTTCATTTGATGTTGCCCTACATGATGGAAGTTGCGTTCAAAGTCTGGATTGTTCACCTGTCTTCTCCTCTGATGCTGAGCTCATATTTGAGTTTTTTGAGGTTGAACTGCCACACCACCGGAGGCCTTTTTACAACAAAATTCTGGAGCTAATTGCTGCTGGAACTTCTAATCCTCAAGTAATTGGTGACCCATCAAAGCTCACTAGTCTGAATTTGCCTGATTTACATCCTGCATCCTGGTTTTCGGTGGCTTGGTATCCTATATATCAAATTCCAGAAGGGCACCTACGCGCATCATTCTTGACTTACCATTCACTTGGACATTTTGTTCAGAGACCTGGTTCAACTGTTGCTCCAGGTTGCATTTTCTTCCCTGTGTTAGGCTTGCAAAGCTACAATTCTCAGGATGAATGCTGGTTTGAACCCAAAATACCTTCTTCAGAACCGACATCTTTTGACACCACAGGAATTCTCATAAAAAGGCTCAGGACGTTGGACGAAAATGCTTTACATTTCGCTAGAGGCTGGGTTTACAAGGATAAAGTCATGGTGCAGAACAGACATCCAGATTACGAGTTCTTCACTTCCCGAAAAACACGTTACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

936

Amino Acids

103.57

Weight (kDa)

8.8

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 614 - 928 1.4e-57 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014776)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44320
malus_domestica MD17G1087100.v1.1
prunus_persica Prupe.3G227600_v2.0.a1 Prupe.3G227600_v2.0.a1
pyrus_communis pycom09g02250 pycom17g08430
rosa_chinensis RchiOBHm_Chr2g0161201
rosa_laevigata RLG00000021267
rosa_multiflora Rmu_sc0006420.1_g000047
rosa_roxburghii Rroxscaffold_2G00089030
rosa_rugosa Rorug02G0487000 Rorug02G0487100
rosa_samantha Rh2AG553800 Rh2BG567300 Rh2CG537600 Rh2DG576700
rosa_wichuraiana Rw2G045810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
Acc36I ACCTGC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 2484
AccBSI CCGCTC 2 cut(s) 880, 1486
AccI GTMKAC 2 cut(s) 1322, 1423
AccII CGCG 1 cut(s) 2493
AciI CCGC 4 cut(s) 671, 880, 1150, 1486
AclWI GGATC 1 cut(s) 1640
AcoI YGGCCR 1 cut(s) 1594
AcuI CTGAAG 2 cut(s) 2151, 2625
AfaI GTAC 9 cut(s) 189, 448, 581, 782, 1404, 1501, 1896, 1924, 2178
AfiI CCNNNNNNNGG 3 cut(s) 1937, 2194, 2582
AflIII ACRYGT 4 cut(s) 598, 799, 1405, 2798
AhlI ACTAGT 2 cut(s) 449, 2405
AjnI CCWGG 5 cut(s) 2005, 2137, 2438, 2539, 2557
AjuI GAANNNNNNNTTGG 4 cut(s) 1374, 1406, 2003, 2035
AloI GAACNNNNNNTCC 6 cut(s) 2220, 2252, 2356, 2388, 2514, 2546
Alw21I GWGCWC 2 cut(s) 182, 2283
Alw26I GTCTC 2 cut(s) 357, 2530
AlwI GGATC 1 cut(s) 1640
AoxI GGCC 4 cut(s) 1514, 1594, 2056, 2324
ApeKI GCWGC 6 cut(s) 944, 1007, 1241, 1667, 1781, 2357
Asp700I GAANNNNTTC 1 cut(s) 1812
AspLEI GCGC 2 cut(s) 1868, 2495
AspS9I GGNCC 5 cut(s) 328, 1145, 1721, 1729, 2126
AsuC2I CCSGG 1 cut(s) 653
AsuHPI GGTGA 6 cut(s) 900, 1095, 1289, 1290, 2247, 2399
AvaII GGWCC 5 cut(s) 328, 1145, 1721, 1729, 2126
BaeGI GKGCMC 1 cut(s) 2487
BalI TGGCCA 1 cut(s) 1596
BanI GGYRCC 1 cut(s) 2484
BanII GRGCYC 2 cut(s) 182, 2283
BarI GAAGNNNNNNTAC 4 cut(s) 694, 726, 2472, 2504
BbsI GAAGAC 2 cut(s) 1159, 2254
Bbv12I GWGCWC 2 cut(s) 182, 2283
BbvI GCAGC 6 cut(s) 931, 994, 1228, 1654, 1768, 2344
BccI CCATC 9 cut(s) 50, 188, 295, 692, 911, 1605, 1939, 2219, 2401
BciT130I CCWGG 5 cut(s) 2007, 2139, 2440, 2541, 2559
BciVI GTATCC 3 cut(s) 725, 1420, 2469
BclI TGATCA 2 cut(s) 358, 1441
BcnI CCSGG 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 357, 2530
BcuI ACTAGT 2 cut(s) 449, 2405
BfaI CTAG 5 cut(s) 114, 450, 789, 2406, 2721
BfmI CTRYAG 1 cut(s) 1242
BfuAI ACCTGC 1 cut(s) 139
BfuI GTATCC 3 cut(s) 725, 1420, 2469
BglII AGATCT 1 cut(s) 844
BisI GCNGC 6 cut(s) 945, 1008, 1242, 1668, 1782, 2358
BlpI GCTNAGC 1 cut(s) 2277
BlsI GCNGC 6 cut(s) 946, 1009, 1243, 1669, 1783, 2359
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 6 cut(s) 653, 2007, 2139, 2440, 2541, 2559
Bme18I GGWCC 5 cut(s) 328, 1145, 1721, 1729, 2126
BmgT120I GGNCC 5 cut(s) 328, 1145, 1721, 1729, 2126
BmiI GGNNCC 4 cut(s) 1147, 1723, 1731, 2486
BmrFI CCNGG 6 cut(s) 653, 2007, 2139, 2440, 2541, 2559
BpiI GAAGAC 2 cut(s) 1159, 2254
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BpmI CTGGAG 3 cut(s) 1488, 2366, 2541
Bpu10I CCTNAGC 1 cut(s) 2687
Bpu1102I GCTNAGC 1 cut(s) 2277
BpuEI CTTGAG 2 cut(s) 1472, 2361
BpuMI CCSGG 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 2427
BsaI GGTCTC 1 cut(s) 2530
BsaJI CCNNGG 5 cut(s) 1413, 1725, 1917, 2006, 2137
BsaWI WCCGGW 1 cut(s) 2319
BsaXI ACNNNNNCTCC 2 cut(s) 2539, 2569
Bsc4I CCNNNNNNNGG 3 cut(s) 1937, 2194, 2582
Bse1I ACTGG 5 cut(s) 49, 1517, 1539, 1997, 2059
Bse3DI GCAATG 1 cut(s) 1830
Bse8I GATNNNNATC 1 cut(s) 2427
BseBI CCWGG 5 cut(s) 2007, 2139, 2440, 2541, 2559
BseDI CCNNGG 5 cut(s) 1413, 1725, 1917, 2006, 2137
BseJI GATNNNNATC 1 cut(s) 2427
BseLI CCNNNNNNNGG 3 cut(s) 1937, 2194, 2582
BseMI GCAATG 1 cut(s) 1830
BseNI ACTGG 5 cut(s) 49, 1517, 1539, 1997, 2059
BseRI GAGGAG 1 cut(s) 2257
BseSI GKGCMC 1 cut(s) 2487
BseXI GCAGC 6 cut(s) 931, 994, 1228, 1654, 1768, 2344
BseYI CCCAGC 2 cut(s) 1578, 2727
BsgI GTGCAG 1 cut(s) 2774
Bsh1236I CGCG 1 cut(s) 2493
BshFI GGCC 4 cut(s) 1516, 1596, 2058, 2326
BshNI GGYRCC 1 cut(s) 2484
BsiHKAI GWGCWC 2 cut(s) 182, 2283
BsiSI CCGG 3 cut(s) 183, 653, 2320
BslFI GGGAC 2 cut(s) 605, 1045
BslI CCNNNNNNNGG 3 cut(s) 1937, 2194, 2582
BsmAI GTCTC 2 cut(s) 357, 2530
BsmBI CGTCTC 1 cut(s) 357
BsmFI GGGAC 2 cut(s) 605, 1045
BsmI GAATGC 2 cut(s) 393, 2618
BsnI GGCC 4 cut(s) 1516, 1596, 2058, 2326
Bso31I GGTCTC 1 cut(s) 2530
Bsp1286I GDGCHC 3 cut(s) 182, 2283, 2487
Bsp1407I TGTACA 1 cut(s) 1894
Bsp143I GATC 7 cut(s) 358, 844, 1100, 1279, 1441, 1645, 2150
Bsp1720I GCTNAGC 1 cut(s) 2277
BspACI CCGC 4 cut(s) 671, 880, 1150, 1486
BspANI GGCC 4 cut(s) 1516, 1596, 2058, 2326
BspFNI CGCG 1 cut(s) 2493
BspLI GGNNCC 4 cut(s) 1147, 1723, 1731, 2486
BspMAI CTGCAG 1 cut(s) 1246
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 1 cut(s) 1640
BspT107I GGYRCC 1 cut(s) 2484
BspTNI GGTCTC 1 cut(s) 2530
BsrBI CCGCTC 2 cut(s) 880, 1486
BsrDI GCAATG 1 cut(s) 1830
BsrGI TGTACA 1 cut(s) 1894
BsrI ACTGG 5 cut(s) 49, 1517, 1539, 1997, 2059
BssECI CCNNGG 5 cut(s) 1413, 1725, 1917, 2006, 2137
BssMI GATC 7 cut(s) 358, 844, 1100, 1279, 1441, 1645, 2150
BssNAI GTATAC 1 cut(s) 1424
BssT1I CCWWGG 3 cut(s) 1413, 1725, 1917
Bst1107I GTATAC 1 cut(s) 1424
Bst2UI CCWGG 5 cut(s) 2007, 2139, 2440, 2541, 2559
Bst4CI ACNGT 8 cut(s) 328, 407, 1289, 1421, 1813, 1940, 1982, 2551
BstAUI TGTACA 1 cut(s) 1894
BstC8I GCNNGC 3 cut(s) 1259, 1821, 2588
BstEII GGTNACC 1 cut(s) 2387
BstENI CCTNNNNNAGG 1 cut(s) 2580
BstFNI CGCG 1 cut(s) 2493
BstHHI GCGC 2 cut(s) 1868, 2495
BstKTI GATC 7 cut(s) 361, 847, 1103, 1282, 1444, 1648, 2153
BstMAI GTCTC 2 cut(s) 357, 2530
BstMBI GATC 7 cut(s) 358, 844, 1100, 1279, 1441, 1645, 2150
BstMWI GCNNNNNNNGC 4 cut(s) 119, 899, 1778, 2592
BstNI CCWGG 5 cut(s) 2007, 2139, 2440, 2541, 2559
BstNSI RCATGY 3 cut(s) 602, 803, 1409
BstPI GGTNACC 1 cut(s) 2387
BstSCI CCNGG 6 cut(s) 651, 2005, 2137, 2438, 2539, 2557
BstSFI CTRYAG 1 cut(s) 1242
BstSLI GKGCMC 1 cut(s) 2487
BstUI CGCG 1 cut(s) 2493
BstV1I GCAGC 6 cut(s) 931, 994, 1228, 1654, 1768, 2344
BstV2I GAAGAC 2 cut(s) 1159, 2254
BstX2I RGATCY 1 cut(s) 844
BstXI CCANNNNNNTGG 1 cut(s) 2519
BstYI RGATCY 1 cut(s) 844
BstZ17I GTATAC 1 cut(s) 1424
BsuI GTATCC 3 cut(s) 725, 1420, 2469
BsuRI GGCC 4 cut(s) 1516, 1596, 2058, 2326
BtsI GCAGTG 3 cut(s) 115, 271, 1861
BtsIMutI CAGTG 9 cut(s) 42, 115, 271, 482, 1285, 1524, 1861, 1987, 2052
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 1259, 1821, 2588
CfoI GCGC 2 cut(s) 1868, 2495
Cfr13I GGNCC 5 cut(s) 328, 1145, 1721, 1729, 2126
CsiI ACCWGGT 1 cut(s) 2539
Csp6I GTAC 9 cut(s) 188, 447, 580, 781, 1403, 1500, 1895, 1923, 2177
CspCI CAANNNNNGTGG 4 cut(s) 509, 544, 1005, 1040
CviQI GTAC 9 cut(s) 188, 447, 580, 781, 1403, 1500, 1895, 1923, 2177
DpnI GATC 7 cut(s) 360, 846, 1102, 1281, 1443, 1647, 2152
DpnII GATC 7 cut(s) 358, 844, 1100, 1279, 1441, 1645, 2150
EaeI YGGCCR 1 cut(s) 1594
Ecl136II GAGCTC 2 cut(s) 180, 2281
Eco130I CCWWGG 3 cut(s) 1413, 1725, 1917
Eco147I AGGCCT 1 cut(s) 2326
Eco24I GRGCYC 2 cut(s) 182, 2283
Eco31I GGTCTC 1 cut(s) 2530
Eco47I GGWCC 5 cut(s) 328, 1145, 1721, 1729, 2126
Eco53kI GAGCTC 2 cut(s) 180, 2281
Eco57I CTGAAG 2 cut(s) 2151, 2625
Eco91I GGTNACC 1 cut(s) 2387
EcoICRI GAGCTC 2 cut(s) 180, 2281
EcoNI CCTNNNNNAGG 1 cut(s) 2580
EcoO109I RGGNCCY 3 cut(s) 1145, 1721, 1729
EcoO65I GGTNACC 1 cut(s) 2387
EcoRI GAATTC 5 cut(s) 12, 151, 883, 922, 2670
EcoRII CCWGG 5 cut(s) 2005, 2137, 2438, 2539, 2557
EcoT14I CCWWGG 3 cut(s) 1413, 1725, 1917
EcoT38I GRGCYC 2 cut(s) 182, 2283
ErhI CCWWGG 3 cut(s) 1413, 1725, 1917
Esp3I CGTCTC 1 cut(s) 357
FalI AAGNNNNNCTT 4 cut(s) 480, 512, 2140, 2172
FaqI GGGAC 2 cut(s) 605, 1045
FauI CCCGC 1 cut(s) 1157
FbaI TGATCA 2 cut(s) 358, 1441
FblI GTMKAC 2 cut(s) 1322, 1423
Fnu4HI GCNGC 6 cut(s) 945, 1008, 1242, 1668, 1782, 2358
FriOI GRGCYC 2 cut(s) 182, 2283
Fsp4HI GCNGC 6 cut(s) 945, 1008, 1242, 1668, 1782, 2358
FspBI CTAG 5 cut(s) 114, 450, 789, 2406, 2721
GlaI GCGC 2 cut(s) 1867, 2494
GluI GCNGC 6 cut(s) 945, 1008, 1242, 1668, 1782, 2358
GsaI CCCAGC 2 cut(s) 1582, 2731
GsuI CTGGAG 3 cut(s) 1488, 2366, 2541
HaeIII GGCC 4 cut(s) 1516, 1596, 2058, 2326
HapII CCGG 3 cut(s) 183, 653, 2320
HhaI GCGC 2 cut(s) 1868, 2495
Hin6I GCGC 2 cut(s) 1866, 2493
HinP1I GCGC 2 cut(s) 1866, 2493
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 8 cut(s) 320, 503, 511, 661, 862, 992, 1079, 2069
HpaI GTTAAC 1 cut(s) 649
HpaII CCGG 3 cut(s) 183, 653, 2320
HphI GGTGA 6 cut(s) 900, 1095, 1289, 1290, 2247, 2399
Hpy166II GTNNAC 9 cut(s) 331, 649, 1193, 1323, 1424, 1522, 1943, 2255, 2734
Hpy8I GTNNAC 9 cut(s) 331, 649, 1193, 1323, 1424, 1522, 1943, 2255, 2734
Hpy99I CGWCG 1 cut(s) 922
HpyAV CCTTC 9 cut(s) 720, 788, 1058, 1311, 1893, 2069, 2109, 2474, 2646
HpyCH4III ACNGT 8 cut(s) 328, 407, 1289, 1421, 1813, 1940, 1982, 2551
HpyCH4IV ACGT 2 cut(s) 2693, 2800
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 899, 1778, 2592
HpySE526I ACGT 2 cut(s) 2693, 2800
HspAI GCGC 2 cut(s) 1866, 2493
Ksp22I TGATCA 2 cut(s) 358, 1441
KspAI GTTAAC 1 cut(s) 649
Kzo9I GATC 7 cut(s) 358, 844, 1100, 1279, 1441, 1645, 2150
LmnI GCTCC 5 cut(s) 185, 1469, 1483, 2347, 2560
Lsp1109I GCAGC 6 cut(s) 931, 994, 1228, 1654, 1768, 2344
MabI ACCWGGT 1 cut(s) 2539
MaeI CTAG 5 cut(s) 114, 450, 789, 2406, 2721
MaeII ACGT 2 cut(s) 2693, 2800
MaeIII GTNAC 7 cut(s) 479, 623, 824, 1076, 1176, 2387, 2801
MalI GATC 7 cut(s) 360, 846, 1102, 1281, 1443, 1647, 2152
MbiI CCGCTC 2 cut(s) 880, 1486
MboI GATC 7 cut(s) 358, 844, 1100, 1279, 1441, 1645, 2150
MfeI CAATTG 2 cut(s) 1196, 2117
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 3 cut(s) 182, 2283, 2487
MlsI TGGCCA 1 cut(s) 1596
MluNI TGGCCA 1 cut(s) 1596
MlyI GAGTC 2 cut(s) 1001, 1073
MmeI TCCRAC 6 cut(s) 226, 364, 545, 746, 2001, 2676
Mox20I TGGCCA 1 cut(s) 1596
MroXI GAANNNNTTC 1 cut(s) 1812
MscI TGGCCA 1 cut(s) 1596
MseI TTAA 7 cut(s) 38, 440, 648, 849, 1116, 1574, 1586
MslI CAYNNNNRTG 2 cut(s) 303, 939
Msp20I TGGCCA 1 cut(s) 1596
MspA1I CMGCKG 1 cut(s) 1493
MspI CCGG 3 cut(s) 183, 653, 2320
MspR9I CCNGG 6 cut(s) 653, 2007, 2139, 2440, 2541, 2559
MunI CAATTG 2 cut(s) 1196, 2117
Mva1269I GAATGC 2 cut(s) 393, 2618
MvaI CCWGG 5 cut(s) 2007, 2139, 2440, 2541, 2559
MvnI CGCG 1 cut(s) 2493
MwoI GCNNNNNNNGC 4 cut(s) 119, 899, 1778, 2592
NciI CCSGG 1 cut(s) 653
NdeII GATC 7 cut(s) 358, 844, 1100, 1279, 1441, 1645, 2150
NlaIV GGNNCC 4 cut(s) 1147, 1723, 1731, 2486
NmuCI GTSAC 2 cut(s) 1076, 2387
NspI RCATGY 3 cut(s) 602, 803, 1409
PaqCI CACCTGC 1 cut(s) 139
PceI AGGCCT 1 cut(s) 2326
PciI ACATGT 3 cut(s) 598, 799, 1405
PctI GAATGC 2 cut(s) 393, 2618
PdmI GAANNNNTTC 1 cut(s) 1812
PfeI GAWTC 6 cut(s) 320, 503, 511, 661, 862, 2069
PkrI GCNGC 6 cut(s) 946, 1009, 1243, 1669, 1783, 2359
PleI GAGTC 2 cut(s) 1000, 1073
PpsI GAGTC 2 cut(s) 1000, 1073
PpuMI RGGWCCY 3 cut(s) 1145, 1721, 1729
PscI ACATGT 3 cut(s) 598, 799, 1405
Psp124BI GAGCTC 2 cut(s) 182, 2283
Psp5II RGGWCCY 3 cut(s) 1145, 1721, 1729
Psp6I CCWGG 5 cut(s) 2005, 2137, 2438, 2539, 2557
PspEI GGTNACC 1 cut(s) 2387
PspFI CCCAGC 2 cut(s) 1578, 2727
PspGI CCWGG 5 cut(s) 2005, 2137, 2438, 2539, 2557
PspN4I GGNNCC 4 cut(s) 1147, 1723, 1731, 2486
PspPI GGNCC 5 cut(s) 328, 1145, 1721, 1729, 2126
PspPPI RGGWCCY 3 cut(s) 1145, 1721, 1729
PsrI GAACNNNNNNTAC 2 cut(s) 2616, 2648
PstI CTGCAG 1 cut(s) 1246
PsuI RGATCY 1 cut(s) 844
PvuII CAGCTG 1 cut(s) 1493
RsaI GTAC 9 cut(s) 189, 448, 581, 782, 1404, 1501, 1896, 1924, 2178
RsaNI GTAC 9 cut(s) 188, 447, 580, 781, 1403, 1500, 1895, 1923, 2177
RseI CAYNNNNRTG 2 cut(s) 303, 939
SacI GAGCTC 2 cut(s) 182, 2283
SaqAI TTAA 7 cut(s) 38, 440, 648, 849, 1116, 1574, 1586
SatI GCNGC 6 cut(s) 945, 1008, 1242, 1668, 1782, 2358
Sau3AI GATC 7 cut(s) 358, 844, 1100, 1279, 1441, 1645, 2150
Sau96I GGNCC 5 cut(s) 328, 1145, 1721, 1729, 2126
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 2 cut(s) 1001, 1073
ScrFI CCNGG 6 cut(s) 653, 2007, 2139, 2440, 2541, 2559
SduI GDGCHC 3 cut(s) 182, 2283, 2487
SexAI ACCWGGT 1 cut(s) 2539
SfcI CTRYAG 1 cut(s) 1242
SinI GGWCC 5 cut(s) 328, 1145, 1721, 1729, 2126
SmiMI CAYNNNNRTG 2 cut(s) 303, 939
SmlI CTYRAG 2 cut(s) 1451, 2376
SmoI CTYRAG 2 cut(s) 1451, 2376
SpeI ACTAGT 2 cut(s) 449, 2405
SseBI AGGCCT 1 cut(s) 2326
SsiI CCGC 4 cut(s) 671, 880, 1150, 1486
SspI AATATT 1 cut(s) 1477
SspMI CTAG 5 cut(s) 114, 450, 789, 2406, 2721
SstI GAGCTC 2 cut(s) 182, 2283
StuI AGGCCT 1 cut(s) 2326
StyD4I CCNGG 6 cut(s) 651, 2005, 2137, 2438, 2539, 2557
StyI CCWWGG 3 cut(s) 1413, 1725, 1917
TaaI ACNGT 8 cut(s) 328, 407, 1289, 1421, 1813, 1940, 1982, 2551
TaiI ACGT 2 cut(s) 2696, 2803
TaqI TCGA 2 cut(s) 920, 1282
TatI WGTACW 5 cut(s) 446, 579, 780, 1894, 2176
TfiI GAWTC 6 cut(s) 320, 503, 511, 661, 862, 2069
Tru1I TTAA 7 cut(s) 38, 440, 648, 849, 1116, 1574, 1586
Tru9I TTAA 7 cut(s) 38, 440, 648, 849, 1116, 1574, 1586
TscAI CASTG 9 cut(s) 49, 115, 271, 482, 1292, 1524, 1868, 1987, 2059
TseFI GTSAC 2 cut(s) 1076, 2387
TseI GCWGC 6 cut(s) 944, 1007, 1241, 1667, 1781, 2357
Tsp45I GTSAC 2 cut(s) 1076, 2387
TspGWI ACGGA 4 cut(s) 609, 705, 906, 1076
TspRI CASTG 9 cut(s) 49, 115, 271, 482, 1292, 1524, 1868, 1987, 2059
VpaK11BI GGWCC 5 cut(s) 328, 1145, 1721, 1729, 2126
XagI CCTNNNNNAGG 1 cut(s) 2580
XceI RCATGY 3 cut(s) 602, 803, 1409
XcmI CCANNNNNNNNNTGG 3 cut(s) 1575, 1745, 2195
XmiI GTMKAC 2 cut(s) 1322, 1423
XmnI GAANNNNTTC 1 cut(s) 1812
XspI CTAG 5 cut(s) 114, 450, 789, 2406, 2721
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.