Domain of unknown function (DUF3444)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G05230 AT2G05250 AT5G35753 |
| fragaria_vesca | FvH4_6g40880 FvH4_6g40880 |
| malus_domestica | MD09G1123800.v1.1 MD17G1114600.v1.1 |
| prunus_persica | Prupe.3G200300_v2.0.a1 Prupe.3G200300_v2.0.a1 |
| pyrus_communis | pycom09g04790 pycom17g10590 |
| rosa_chinensis | RchiOBHm_Chr2g0156451 |
| rosa_laevigata | RLG00000020913 |
| rosa_multiflora | Rmu_sc0005392.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00093030 |
| rosa_rugosa | Rorug02G0453200 |
| rosa_samantha | Rh2AG519200 Rh2BG531500 Rh2CG504400 Rh2DG540500 |
| rosa_wichuraiana | Rw2G042820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 376 |
| Acc65I | GGTACC | 1 cut(s) | 626 |
| AccB1I | GGYRCC | 5 cut(s) | 626, 647, 1099, 1830, 1999 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 545, 623, 644, 1760, 1959 |
| AccI | GTMKAC | 2 cut(s) | 496, 1926 |
| AciI | CCGC | 2 cut(s) | 21, 2004 |
| AclI | AACGTT | 1 cut(s) | 847 |
| AclWI | GGATC | 4 cut(s) | 987, 2054, 2061, 2067 |
| AcoI | YGGCCR | 1 cut(s) | 569 |
| AcsI | RAATTY | 2 cut(s) | 1601, 1651 |
| AcuI | CTGAAG | 1 cut(s) | 1293 |
| AdeI | CACNNNGTG | 1 cut(s) | 1999 |
| AfaI | GTAC | 4 cut(s) | 203, 628, 1523, 1533 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 366, 545, 584, 623, 644, 1617, 1760, 1959 |
| AflIII | ACRYGT | 1 cut(s) | 1315 |
| AjiI | CACGTC | 1 cut(s) | 1316 |
| AjnI | CCWGG | 4 cut(s) | 652, 1345, 1995, 2038 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1616, 1648, 1725, 1757 |
| Alw21I | GWGCWC | 4 cut(s) | 713, 1345, 1586, 1663 |
| Alw26I | GTCTC | 7 cut(s) | 361, 1355, 1386, 1549, 1894, 2151, 2178 |
| AlwI | GGATC | 4 cut(s) | 987, 2054, 2061, 2067 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 210, 1190, 1421 |
| AoxI | GGCC | 3 cut(s) | 47, 569, 1607 |
| ApaI | GGGCCC | 1 cut(s) | 1611 |
| ApoI | RAATTY | 2 cut(s) | 1601, 1651 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 847 |
| Asp718I | GGTACC | 1 cut(s) | 626 |
| AspLEI | GCGC | 2 cut(s) | 1952, 2128 |
| AspS9I | GGNCC | 6 cut(s) | 48, 369, 513, 929, 1607, 1608 |
| AsuHPI | GGTGA | 3 cut(s) | 227, 1627, 1985 |
| AsuNHI | GCTAGC | 1 cut(s) | 893 |
| AvaII | GGWCC | 3 cut(s) | 369, 513, 929 |
| BaeGI | GKGCMC | 3 cut(s) | 652, 1611, 2004 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 610, 643 |
| BalI | TGGCCA | 1 cut(s) | 571 |
| BamHI | GGATCC | 1 cut(s) | 2059 |
| BanI | GGYRCC | 5 cut(s) | 626, 647, 1099, 1830, 1999 |
| BanII | GRGCYC | 7 cut(s) | 713, 1345, 1404, 1586, 1611, 1663, 1777 |
| Bbv12I | GWGCWC | 4 cut(s) | 713, 1345, 1586, 1663 |
| BccI | CCATC | 3 cut(s) | 286, 332, 1499 |
| BceAI | ACGGC | 1 cut(s) | 1113 |
| BciT130I | CCWGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| BciVI | GTATCC | 1 cut(s) | 22 |
| BclI | TGATCA | 2 cut(s) | 1048, 1128 |
| BcoDI | GTCTC | 7 cut(s) | 361, 1355, 1386, 1549, 1894, 2151, 2178 |
| BfaI | CTAG | 5 cut(s) | 894, 1019, 1062, 1116, 1728 |
| BfmI | CTRYAG | 7 cut(s) | 435, 459, 1005, 1182, 1197, 1335, 2121 |
| BfoI | RGCGCY | 2 cut(s) | 1953, 2129 |
| BfuI | GTATCC | 1 cut(s) | 22 |
| Bme1390I | CCNGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| Bme18I | GGWCC | 3 cut(s) | 369, 513, 929 |
| BmgBI | CACGTC | 1 cut(s) | 1316 |
| BmgT120I | GGNCC | 6 cut(s) | 48, 369, 513, 929, 1607, 1608 |
| BmiI | GGNNCC | 9 cut(s) | 550, 628, 649, 754, 1101, 1609, 1832, 2001, 2061 |
| BmrFI | CCNGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| BmsI | GCATC | 4 cut(s) | 256, 1079, 1102, 1360 |
| BmtI | GCTAGC | 1 cut(s) | 897 |
| BpmI | CTGGAG | 8 cut(s) | 170, 753, 834, 1329, 1800, 2058, 2085, 2196 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1398 |
| BpuEI | CTTGAG | 2 cut(s) | 241, 1600 |
| BsaAI | YACGTR | 1 cut(s) | 1535 |
| BsaBI | GATNNNNATC | 3 cut(s) | 906, 1127, 2058 |
| BsaI | GGTCTC | 2 cut(s) | 1386, 1549 |
| BsaJI | CCNNGG | 6 cut(s) | 566, 652, 1095, 1346, 1514, 2244 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1725, 1755 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 366, 545, 584, 623, 644, 1617, 1760, 1959 |
| Bse1I | ACTGG | 4 cut(s) | 153, 670, 1415, 1622 |
| Bse8I | GATNNNNATC | 3 cut(s) | 906, 1127, 2058 |
| BseBI | CCWGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| BseDI | CCNNGG | 6 cut(s) | 566, 652, 1095, 1346, 1514, 2244 |
| BseGI | GGATG | 1 cut(s) | 907 |
| BseJI | GATNNNNATC | 3 cut(s) | 906, 1127, 2058 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 366, 545, 584, 623, 644, 1617, 1760, 1959 |
| BseMII | CTCAG | 4 cut(s) | 63, 924, 1389, 1560 |
| BseNI | ACTGG | 4 cut(s) | 153, 670, 1415, 1622 |
| BseRI | GAGGAG | 2 cut(s) | 58, 1746 |
| BseSI | GKGCMC | 3 cut(s) | 652, 1611, 2004 |
| BseYI | CCCAGC | 2 cut(s) | 538, 637 |
| BshFI | GGCC | 3 cut(s) | 49, 571, 1609 |
| BshNI | GGYRCC | 5 cut(s) | 626, 647, 1099, 1830, 1999 |
| BsiHKAI | GWGCWC | 4 cut(s) | 713, 1345, 1586, 1663 |
| BslFI | GGGAC | 2 cut(s) | 1403, 2041 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 366, 545, 584, 623, 644, 1617, 1760, 1959 |
| BsmAI | GTCTC | 7 cut(s) | 361, 1355, 1386, 1549, 1894, 2151, 2178 |
| BsmBI | CGTCTC | 3 cut(s) | 1894, 2151, 2178 |
| BsmFI | GGGAC | 2 cut(s) | 1403, 2041 |
| BsmI | GAATGC | 1 cut(s) | 589 |
| BsnI | GGCC | 3 cut(s) | 49, 571, 1609 |
| Bso31I | GGTCTC | 2 cut(s) | 1386, 1549 |
| Bsp120I | GGGCCC | 1 cut(s) | 1607 |
| Bsp1286I | GDGCHC | 9 cut(s) | 652, 713, 1345, 1404, 1586, 1611, 1663, 1777, 2004 |
| Bsp143I | GATC | 8 cut(s) | 66, 223, 406, 979, 1048, 1128, 2053, 2059 |
| BspACI | CCGC | 2 cut(s) | 21, 2004 |
| BspANI | GGCC | 3 cut(s) | 49, 571, 1609 |
| BspCNI | CTCAG | 4 cut(s) | 64, 925, 1390, 1559 |
| BspLI | GGNNCC | 9 cut(s) | 550, 628, 649, 754, 1101, 1609, 1832, 2001, 2061 |
| BspMAI | CTGCAG | 4 cut(s) | 439, 1009, 1201, 2125 |
| BspOI | GCTAGC | 1 cut(s) | 897 |
| BspPI | GGATC | 4 cut(s) | 987, 2054, 2061, 2067 |
| BspT107I | GGYRCC | 5 cut(s) | 626, 647, 1099, 1830, 1999 |
| BspTNI | GGTCTC | 2 cut(s) | 1386, 1549 |
| BsrI | ACTGG | 4 cut(s) | 153, 670, 1415, 1622 |
| BssECI | CCNNGG | 6 cut(s) | 566, 652, 1095, 1346, 1514, 2244 |
| BssMI | GATC | 8 cut(s) | 66, 223, 406, 979, 1048, 1128, 2053, 2059 |
| BssNAI | GTATAC | 1 cut(s) | 1927 |
| BssT1I | CCWWGG | 1 cut(s) | 566 |
| Bst1107I | GTATAC | 1 cut(s) | 1927 |
| Bst2UI | CCWGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| Bst4CI | ACNGT | 5 cut(s) | 15, 463, 517, 752, 1526 |
| Bst6I | CTCTTC | 3 cut(s) | 1161, 1866, 1966 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 529, 647 |
| BstBAI | YACGTR | 1 cut(s) | 1535 |
| BstC8I | GCNNGC | 6 cut(s) | 534, 895, 1269, 1511, 1908, 2004 |
| BstDEI | CTNAG | 5 cut(s) | 72, 108, 933, 1398, 1546 |
| BstDSI | CCRYGG | 1 cut(s) | 1095 |
| BstEII | GGTNACC | 1 cut(s) | 604 |
| BstF5I | GGATG | 1 cut(s) | 907 |
| BstH2I | RGCGCY | 2 cut(s) | 1953, 2129 |
| BstHHI | GCGC | 2 cut(s) | 1952, 2128 |
| BstKTI | GATC | 8 cut(s) | 69, 226, 409, 982, 1051, 1131, 2056, 2062 |
| BstMAI | GTCTC | 7 cut(s) | 361, 1355, 1386, 1549, 1894, 2151, 2178 |
| BstMBI | GATC | 8 cut(s) | 66, 223, 406, 979, 1048, 1128, 2053, 2059 |
| BstNI | CCWGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| BstNSI | RCATGY | 6 cut(s) | 674, 1223, 1271, 1414, 1513, 1688 |
| BstPI | GGTNACC | 1 cut(s) | 604 |
| BstSCI | CCNGG | 4 cut(s) | 652, 1345, 1995, 2038 |
| BstSFI | CTRYAG | 7 cut(s) | 435, 459, 1005, 1182, 1197, 1335, 2121 |
| BstSLI | GKGCMC | 3 cut(s) | 652, 1611, 2004 |
| BstX2I | RGATCY | 2 cut(s) | 2053, 2059 |
| BstYI | RGATCY | 2 cut(s) | 2053, 2059 |
| BstZ17I | GTATAC | 1 cut(s) | 1927 |
| BsuI | GTATCC | 1 cut(s) | 22 |
| BsuRI | GGCC | 3 cut(s) | 49, 571, 1609 |
| BtgI | CCRYGG | 1 cut(s) | 1095 |
| BtrI | CACGTC | 1 cut(s) | 1316 |
| BtsCI | GGATG | 1 cut(s) | 907 |
| BtsI | GCAGTG | 2 cut(s) | 126, 276 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 276, 710 |
| Cac8I | GCNNGC | 6 cut(s) | 534, 895, 1269, 1511, 1908, 2004 |
| CaiI | CAGNNNCTG | 3 cut(s) | 210, 1190, 1421 |
| CfoI | GCGC | 2 cut(s) | 1952, 2128 |
| Cfr13I | GGNCC | 6 cut(s) | 48, 369, 513, 929, 1607, 1608 |
| CseI | GACGC | 1 cut(s) | 1876 |
| CsiI | ACCWGGT | 2 cut(s) | 1995, 2038 |
| Csp6I | GTAC | 4 cut(s) | 202, 627, 1522, 1532 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1627, 1662 |
| CviQI | GTAC | 4 cut(s) | 202, 627, 1522, 1532 |
| DdeI | CTNAG | 5 cut(s) | 72, 108, 933, 1398, 1546 |
| DpnI | GATC | 8 cut(s) | 68, 225, 408, 981, 1050, 1130, 2055, 2061 |
| DpnII | GATC | 8 cut(s) | 66, 223, 406, 979, 1048, 1128, 2053, 2059 |
| DraIII | CACNNNGTG | 1 cut(s) | 1999 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 376 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 376 |
| EaeI | YGGCCR | 1 cut(s) | 569 |
| Eam1104I | CTCTTC | 3 cut(s) | 1161, 1866, 1966 |
| EarI | CTCTTC | 3 cut(s) | 1161, 1866, 1966 |
| Ecl136II | GAGCTC | 4 cut(s) | 711, 1343, 1584, 1661 |
| Eco130I | CCWWGG | 1 cut(s) | 566 |
| Eco24I | GRGCYC | 7 cut(s) | 713, 1345, 1404, 1586, 1611, 1663, 1777 |
| Eco31I | GGTCTC | 2 cut(s) | 1386, 1549 |
| Eco32I | GATATC | 1 cut(s) | 1768 |
| Eco47I | GGWCC | 3 cut(s) | 369, 513, 929 |
| Eco53kI | GAGCTC | 4 cut(s) | 711, 1343, 1584, 1661 |
| Eco57I | CTGAAG | 1 cut(s) | 1293 |
| Eco91I | GGTNACC | 1 cut(s) | 604 |
| EcoICRI | GAGCTC | 4 cut(s) | 711, 1343, 1584, 1661 |
| EcoO109I | RGGNCCY | 1 cut(s) | 48 |
| EcoO65I | GGTNACC | 1 cut(s) | 604 |
| EcoRI | GAATTC | 1 cut(s) | 1601 |
| EcoRII | CCWGG | 4 cut(s) | 652, 1345, 1995, 2038 |
| EcoRV | GATATC | 1 cut(s) | 1768 |
| EcoT14I | CCWWGG | 1 cut(s) | 566 |
| EcoT22I | ATGCAT | 1 cut(s) | 676 |
| EcoT38I | GRGCYC | 7 cut(s) | 713, 1345, 1404, 1586, 1611, 1663, 1777 |
| ErhI | CCWWGG | 1 cut(s) | 566 |
| Esp3I | CGTCTC | 3 cut(s) | 1894, 2151, 2178 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 383, 415, 2070, 2102 |
| FaqI | GGGAC | 2 cut(s) | 1403, 2041 |
| FauI | CCCGC | 1 cut(s) | 2011 |
| FauNDI | CATATG | 1 cut(s) | 676 |
| FbaI | TGATCA | 2 cut(s) | 1048, 1128 |
| FblI | GTMKAC | 2 cut(s) | 496, 1926 |
| FokI | GGATG | 1 cut(s) | 894 |
| FriOI | GRGCYC | 7 cut(s) | 713, 1345, 1404, 1586, 1611, 1663, 1777 |
| FspBI | CTAG | 5 cut(s) | 894, 1019, 1062, 1116, 1728 |
| GlaI | GCGC | 2 cut(s) | 1951, 2127 |
| GsaI | CCCAGC | 2 cut(s) | 542, 641 |
| GsuI | CTGGAG | 8 cut(s) | 170, 753, 834, 1329, 1800, 2058, 2085, 2196 |
| HaeII | RGCGCY | 2 cut(s) | 1953, 2129 |
| HaeIII | GGCC | 3 cut(s) | 49, 571, 1609 |
| HgaI | GACGC | 1 cut(s) | 1876 |
| HhaI | GCGC | 2 cut(s) | 1952, 2128 |
| Hin6I | GCGC | 2 cut(s) | 1950, 2126 |
| HinP1I | GCGC | 2 cut(s) | 1950, 2126 |
| HincII | GTYRAC | 1 cut(s) | 1690 |
| HindII | GTYRAC | 1 cut(s) | 1690 |
| HinfI | GANTC | 7 cut(s) | 207, 235, 972, 1424, 1711, 1963, 2224 |
| HpaI | GTTAAC | 1 cut(s) | 1690 |
| HphI | GGTGA | 3 cut(s) | 227, 1627, 1985 |
| Hpy166II | GTNNAC | 5 cut(s) | 497, 1615, 1635, 1690, 1927 |
| Hpy8I | GTNNAC | 5 cut(s) | 497, 1615, 1635, 1690, 1927 |
| Hpy99I | CGWCG | 1 cut(s) | 2021 |
| HpyAV | CCTTC | 5 cut(s) | 118, 562, 1129, 2018, 2072 |
| HpyCH4III | ACNGT | 5 cut(s) | 15, 463, 517, 752, 1526 |
| HpyCH4IV | ACGT | 3 cut(s) | 847, 1315, 1534 |
| HpyF3I | CTNAG | 5 cut(s) | 72, 108, 933, 1398, 1546 |
| HpySE526I | ACGT | 3 cut(s) | 847, 1315, 1534 |
| HspAI | GCGC | 2 cut(s) | 1950, 2126 |
| KpnI | GGTACC | 1 cut(s) | 630 |
| Ksp22I | TGATCA | 2 cut(s) | 1048, 1128 |
| KspAI | GTTAAC | 1 cut(s) | 1690 |
| Kzo9I | GATC | 8 cut(s) | 66, 223, 406, 979, 1048, 1128, 2053, 2059 |
| LmnI | GCTCC | 9 cut(s) | 309, 332, 554, 708, 815, 959, 1097, 1340, 1348 |
| LweI | GCATC | 4 cut(s) | 256, 1079, 1102, 1360 |
| MabI | ACCWGGT | 2 cut(s) | 1995, 2038 |
| MaeI | CTAG | 5 cut(s) | 894, 1019, 1062, 1116, 1728 |
| MaeII | ACGT | 3 cut(s) | 847, 1315, 1534 |
| MaeIII | GTNAC | 4 cut(s) | 604, 766, 1980, 2010 |
| MalI | GATC | 8 cut(s) | 68, 225, 408, 981, 1050, 1130, 2055, 2061 |
| MboI | GATC | 8 cut(s) | 66, 223, 406, 979, 1048, 1128, 2053, 2059 |
| MflI | RGATCY | 2 cut(s) | 2053, 2059 |
| MhlI | GDGCHC | 9 cut(s) | 652, 713, 1345, 1404, 1586, 1611, 1663, 1777, 2004 |
| MlsI | TGGCCA | 1 cut(s) | 571 |
| MluCI | AATT | 9 cut(s) | 112, 451, 827, 1160, 1355, 1438, 1601, 1651, 1786 |
| MluNI | TGGCCA | 1 cut(s) | 571 |
| MlyI | GAGTC | 3 cut(s) | 981, 1418, 1720 |
| MmeI | TCCRAC | 2 cut(s) | 937, 1300 |
| Mox20I | TGGCCA | 1 cut(s) | 571 |
| Mph1103I | ATGCAT | 1 cut(s) | 676 |
| MroXI | GAANNNNTTC | 1 cut(s) | 847 |
| MscI | TGGCCA | 1 cut(s) | 571 |
| MslI | CAYNNNNRTG | 4 cut(s) | 471, 675, 703, 1671 |
| Msp20I | TGGCCA | 1 cut(s) | 571 |
| MspA1I | CMGCKG | 1 cut(s) | 764 |
| MspR9I | CCNGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| Mva1269I | GAATGC | 1 cut(s) | 589 |
| MvaI | CCWGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| NdeI | CATATG | 1 cut(s) | 676 |
| NdeII | GATC | 8 cut(s) | 66, 223, 406, 979, 1048, 1128, 2053, 2059 |
| NheI | GCTAGC | 1 cut(s) | 893 |
| NlaIV | GGNNCC | 9 cut(s) | 550, 628, 649, 754, 1101, 1609, 1832, 2001, 2061 |
| NsiI | ATGCAT | 1 cut(s) | 676 |
| NspI | RCATGY | 6 cut(s) | 674, 1223, 1271, 1414, 1513, 1688 |
| PaeI | GCATGC | 2 cut(s) | 1271, 1513 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 981 |
| PctI | GAATGC | 1 cut(s) | 589 |
| PdmI | GAANNNNTTC | 1 cut(s) | 847 |
| PfeI | GAWTC | 4 cut(s) | 207, 235, 1963, 2224 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 545, 623, 644, 1760, 1959 |
| PleI | GAGTC | 3 cut(s) | 980, 1418, 1719 |
| PpsI | GAGTC | 3 cut(s) | 980, 1418, 1719 |
| Ppu21I | YACGTR | 1 cut(s) | 1535 |
| Psp124BI | GAGCTC | 4 cut(s) | 713, 1345, 1586, 1663 |
| Psp1406I | AACGTT | 1 cut(s) | 847 |
| Psp6I | CCWGG | 4 cut(s) | 652, 1345, 1995, 2038 |
| PspEI | GGTNACC | 1 cut(s) | 604 |
| PspFI | CCCAGC | 2 cut(s) | 538, 637 |
| PspGI | CCWGG | 4 cut(s) | 652, 1345, 1995, 2038 |
| PspN4I | GGNNCC | 9 cut(s) | 550, 628, 649, 754, 1101, 1609, 1832, 2001, 2061 |
| PspOMI | GGGCCC | 1 cut(s) | 1607 |
| PspPI | GGNCC | 6 cut(s) | 48, 369, 513, 929, 1607, 1608 |
| PstI | CTGCAG | 4 cut(s) | 439, 1009, 1201, 2125 |
| PstNI | CAGNNNCTG | 3 cut(s) | 210, 1190, 1421 |
| PsuI | RGATCY | 2 cut(s) | 2053, 2059 |
| PvuII | CAGCTG | 1 cut(s) | 764 |
| RsaI | GTAC | 4 cut(s) | 203, 628, 1523, 1533 |
| RsaNI | GTAC | 4 cut(s) | 202, 627, 1522, 1532 |
| RseI | CAYNNNNRTG | 4 cut(s) | 471, 675, 703, 1671 |
| SacI | GAGCTC | 4 cut(s) | 713, 1345, 1586, 1663 |
| Sau3AI | GATC | 8 cut(s) | 66, 223, 406, 979, 1048, 1128, 2053, 2059 |
| Sau96I | GGNCC | 6 cut(s) | 48, 369, 513, 929, 1607, 1608 |
| SchI | GAGTC | 3 cut(s) | 981, 1418, 1720 |
| ScrFI | CCNGG | 4 cut(s) | 654, 1347, 1997, 2040 |
| SduI | GDGCHC | 9 cut(s) | 652, 713, 1345, 1404, 1586, 1611, 1663, 1777, 2004 |
| SexAI | ACCWGGT | 2 cut(s) | 1995, 2038 |
| SfaNI | GCATC | 4 cut(s) | 256, 1079, 1102, 1360 |
| SfcI | CTRYAG | 7 cut(s) | 435, 459, 1005, 1182, 1197, 1335, 2121 |
| SinI | GGWCC | 3 cut(s) | 369, 513, 929 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 471, 675, 703, 1671 |
| SmlI | CTYRAG | 2 cut(s) | 256, 1579 |
| SmoI | CTYRAG | 2 cut(s) | 256, 1579 |
| SphI | GCATGC | 2 cut(s) | 1271, 1513 |
| Sse9I | AATT | 9 cut(s) | 112, 451, 827, 1160, 1355, 1438, 1601, 1651, 1786 |
| SsiI | CCGC | 2 cut(s) | 21, 2004 |
| SspMI | CTAG | 5 cut(s) | 894, 1019, 1062, 1116, 1728 |
| SstI | GAGCTC | 4 cut(s) | 713, 1345, 1586, 1663 |
| StyD4I | CCNGG | 4 cut(s) | 652, 1345, 1995, 2038 |
| StyI | CCWWGG | 1 cut(s) | 566 |
| TaaI | ACNGT | 5 cut(s) | 15, 463, 517, 752, 1526 |
| TaiI | ACGT | 3 cut(s) | 850, 1318, 1537 |
| TaqI | TCGA | 4 cut(s) | 233, 1154, 1663, 2016 |
| TasI | AATT | 9 cut(s) | 112, 451, 827, 1160, 1355, 1438, 1601, 1651, 1786 |
| TatI | WGTACW | 2 cut(s) | 201, 1521 |
| TfiI | GAWTC | 4 cut(s) | 207, 235, 1963, 2224 |
| TscAI | CASTG | 3 cut(s) | 126, 276, 710 |
| TspGWI | ACGGA | 2 cut(s) | 1955, 2034 |
| TspRI | CASTG | 3 cut(s) | 126, 276, 710 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 545, 623, 644, 1760, 1959 |
| VpaK11BI | GGWCC | 3 cut(s) | 369, 513, 929 |
| XapI | RAATTY | 2 cut(s) | 1601, 1651 |
| XceI | RCATGY | 6 cut(s) | 674, 1223, 1271, 1414, 1513, 1688 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1482 |
| XmiI | GTMKAC | 2 cut(s) | 496, 1926 |
| XmnI | GAANNNNTTC | 1 cut(s) | 847 |
| XspI | CTAG | 5 cut(s) | 894, 1019, 1062, 1116, 1728 |
| Zsp2I | ATGCAT | 1 cut(s) | 676 |