Rroxscaffold_2G00096580

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018108
Physical Location & Seq
Forward (+)
17898068 .. 17900908
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096580.1

Sequence Viewer

Length: 972 bp
ATGCGTTACATATTGCCAAACCATACCAGTCTCACTAACCAAGTTTACCTCAATCCACAAAAATGTTCTGGTTTAGGGTTGACAAATGAAGGCACCACTACTGAAAGGAATGCTAGTATTTCAAGCCCCAAGGAAGAGGGCTCTCATCGAGGATGTTTTAGAGGAGCCAAGTGCTTCTATGCACATTGTGAAGAGGAGTCTTGGAAAGTGAAGCACAGAAAATATTGGAGTCATTTTTCTGCTGCTAAACAACTCAAAAGCAAAATCTCTGTACGAGGACTTCCTTCTTCAGTGGACTCTGATATTTTGGACAAAACTAAAGGCACTACCAATGTTGTTGCGAGTTTAGAGAATGAAAAGAAAATCATCCTTGGAAGTGACTCCAGATTGACCTACGAAGGAATTATAAGAACAGATGTGCAAAAAAAATTTGAACAGATAACTTCAAATATCATAGCCACAATGGTTGGAAGTGCTGGCGGATGCGAAAAGATTTGGAAACACATGCAAGAATATTGTAAGTCCCAAGGAGCTGAGCCAAAGACGATTTCTTCCATATCCAAATATGGATGTGAGATACCTAGGAAAGTTGATGATTTTCTGTCATCTGAATGTTTTGTCATCGGGGTTGAAAATGATAAGCCAACCATATATCATCTTACTGACATATATGATGAAAAACTCAAAGAGCGTGTCAAAGATTCAAAGAAGGTTAATGATACTTTTGCTGCACTTGGAACTGGGAGTTTGATCGCTCTTGATGCATGGAATGAAGAATTGAATGGACGTAGCCCTCACCTAAATCTAGCAATTGAAGCAATCTCATTTGGACTACTGAAAGCAGCATTATACAGTTCTGATATTGGTGGAATATTACGAGTGATCCAATTATGCTCAACTGGAATTGAGATGGAGTGCAACAAAACCGTTGTTGAACTTTATCTACAATTCTATGAGCGCTTTAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

323

Amino Acids

36.17

Weight (kDa)

8.22

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 116 - 220 6.7e-07 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018108)

Species Orthologous Gene IDs
malus_domestica MD08G1122100.v1.1
rosa_laevigata RLG00000020540
rosa_multiflora Rmu_sc0001102.1_g000001
rosa_roxburghii Rroxscaffold_2G00096540 Rroxscaffold_2G00096580
rosa_samantha Rh2BG498000 Rh2BG498400 Rh2DG508900 Rh2DG509200
rosa_wichuraiana Rw2G039820 Rw2G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 1 cut(s) 480
AclWI GGATC 1 cut(s) 877
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 1 cut(s) 273
AfeI AGCGCT 1 cut(s) 959
AgsI TTSAA 8 cut(s) 123, 434, 447, 632, 705, 781, 815, 935
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AluBI AGCT 1 cut(s) 533
AluI AGCT 1 cut(s) 533
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 877
Aor51HI AGCGCT 1 cut(s) 959
ApeKI GCWGC 3 cut(s) 242, 728, 842
ApoI RAATTY 1 cut(s) 428
ArsI GACNNNNNNTTYG 2 cut(s) 678, 710
AspA2I CCTAGG 1 cut(s) 581
AspLEI GCGC 1 cut(s) 960
AsuHPI GGTGA 1 cut(s) 788
AvrII CCTAGG 1 cut(s) 581
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BbvI GCAGC 3 cut(s) 229, 715, 854
BccI CCATC 1 cut(s) 904
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 3 cut(s) 114, 582, 806
BfoI RGCGCY 1 cut(s) 961
BisI GCNGC 3 cut(s) 243, 729, 843
BlnI CCTAGG 1 cut(s) 581
BlpI GCTNAGC 1 cut(s) 534
BlsI GCNGC 3 cut(s) 244, 730, 844
BmiI GGNNCC 2 cut(s) 94, 166
BmrI ACTGGG 1 cut(s) 750
BmsI GCATC 2 cut(s) 473, 751
BmuI ACTGGG 1 cut(s) 750
BpmI CTGGAG 1 cut(s) 367
Bpu1102I GCTNAGC 1 cut(s) 534
BsaJI CCNNGG 4 cut(s) 129, 370, 526, 581
Bse1I ACTGG 3 cut(s) 27, 745, 904
BseDI CCNNGG 4 cut(s) 129, 370, 526, 581
BseGI GGATG 4 cut(s) 158, 366, 488, 575
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 3 cut(s) 27, 745, 904
BseRI GAGGAG 2 cut(s) 177, 209
BseXI GCAGC 3 cut(s) 229, 715, 854
BsgI GTGCAG 1 cut(s) 714
BshNI GGYRCC 1 cut(s) 92
BslFI GGGAC 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 508
BsmI GAATGC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 750, 882
Bsp1720I GCTNAGC 1 cut(s) 534
BspACI CCGC 1 cut(s) 480
BspCNI CTCAG 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 94, 166
BspPI GGATC 1 cut(s) 877
BspT107I GGYRCC 1 cut(s) 92
BsrI ACTGG 3 cut(s) 27, 745, 904
BssECI CCNNGG 4 cut(s) 129, 370, 526, 581
BssMI GATC 2 cut(s) 750, 882
BssT1I CCWWGG 4 cut(s) 129, 370, 526, 581
Bst4CI ACNGT 2 cut(s) 854, 928
Bst6I CTCTTC 2 cut(s) 129, 186
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 1 cut(s) 534
BstF5I GGATG 4 cut(s) 158, 366, 488, 575
BstH2I RGCGCY 1 cut(s) 961
BstHHI GCGC 1 cut(s) 960
BstKTI GATC 2 cut(s) 753, 885
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 750, 882
BstMWI GCNNNNNNNGC 3 cut(s) 761, 815, 964
BstNSI RCATGY 1 cut(s) 508
BstV1I GCAGC 3 cut(s) 229, 715, 854
BtsCI GGATG 4 cut(s) 158, 366, 488, 575
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 960
Csp6I GTAC 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 2 cut(s) 505, 765
CviJI RGCY 8 cut(s) 126, 141, 167, 458, 533, 538, 643, 792
CviKI_1 RGCY 8 cut(s) 126, 141, 167, 458, 533, 538, 643, 792
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 534
DpnI GATC 2 cut(s) 752, 884
DpnII GATC 2 cut(s) 750, 882
DraIII CACNNNGTG 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 129, 186
EarI CTCTTC 2 cut(s) 129, 186
EciI GGCGGA 1 cut(s) 495
Eco130I CCWWGG 4 cut(s) 129, 370, 526, 581
Eco24I GRGCYC 1 cut(s) 143
Eco47III AGCGCT 1 cut(s) 959
Eco57I CTGAAG 1 cut(s) 273
EcoT14I CCWWGG 4 cut(s) 129, 370, 526, 581
EcoT22I ATGCAT 1 cut(s) 766
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 4 cut(s) 129, 370, 526, 581
FaeI CATG 2 cut(s) 508, 768
FaqI GGGAC 1 cut(s) 508
FatI CATG 2 cut(s) 504, 764
Fnu4HI GCNGC 3 cut(s) 243, 729, 843
FokI GGATG 4 cut(s) 165, 353, 495, 582
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 243, 729, 843
FspBI CTAG 3 cut(s) 114, 582, 806
GlaI GCGC 1 cut(s) 959
GluI GCNGC 3 cut(s) 243, 729, 843
GsuI CTGGAG 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 961
HhaI GCGC 1 cut(s) 960
Hin1II CATG 2 cut(s) 508, 768
Hin6I GCGC 1 cut(s) 958
HinP1I GCGC 1 cut(s) 958
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 5 cut(s) 197, 229, 296, 380, 701
HphI GGTGA 1 cut(s) 788
Hpy166II GTNNAC 3 cut(s) 46, 81, 295
Hpy188I TCNGA 3 cut(s) 301, 610, 859
Hpy188III TCNNGA 2 cut(s) 384, 758
Hpy8I GTNNAC 3 cut(s) 46, 81, 295
HpyAV CCTTC 4 cut(s) 83, 294, 392, 703
HpyCH4III ACNGT 2 cut(s) 854, 928
HpyCH4IV ACGT 1 cut(s) 787
HpyCH4V TGCA 6 cut(s) 182, 421, 508, 731, 764, 918
HpyF10VI GCNNNNNNNGC 3 cut(s) 761, 815, 964
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 1 cut(s) 787
Hsp92II CATG 2 cut(s) 508, 768
HspAI GCGC 1 cut(s) 958
Kzo9I GATC 2 cut(s) 750, 882
LmnI GCTCC 2 cut(s) 164, 530
LpnPI CCDG 6 cut(s) 40, 54, 397, 462, 726, 885
Lsp1109I GCAGC 3 cut(s) 229, 715, 854
LweI GCATC 2 cut(s) 473, 751
MaeI CTAG 3 cut(s) 114, 582, 806
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 2 cut(s) 5, 377
MalI GATC 2 cut(s) 752, 884
MboI GATC 2 cut(s) 750, 882
MboII GAAGA 5 cut(s) 146, 203, 279, 543, 785
MfeI CAATTG 1 cut(s) 810
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 7 cut(s) 402, 428, 776, 810, 887, 903, 947
MlyI GAGTC 4 cut(s) 206, 238, 290, 374
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 7 cut(s) 59, 130, 143, 155, 187, 269, 804
Mph1103I ATGCAT 1 cut(s) 766
MseI TTAA 1 cut(s) 714
MslI CAYNNNNRTG 2 cut(s) 61, 610
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 761, 815, 964
NdeII GATC 2 cut(s) 750, 882
NlaIII CATG 2 cut(s) 508, 768
NlaIV GGNNCC 2 cut(s) 94, 166
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 766
NspI RCATGY 1 cut(s) 508
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 701
PkrI GCNGC 3 cut(s) 244, 730, 844
PleI GAGTC 4 cut(s) 205, 237, 290, 374
PpsI GAGTC 4 cut(s) 205, 237, 290, 374
PsiI TTATAA 1 cut(s) 407
PspN4I GGNNCC 2 cut(s) 94, 166
PsrI GAACNNNNNNTAC 2 cut(s) 927, 959
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 2 cut(s) 61, 610
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 3 cut(s) 243, 729, 843
Sau3AI GATC 2 cut(s) 750, 882
SchI GAGTC 4 cut(s) 206, 238, 290, 374
SduI GDGCHC 1 cut(s) 143
SetI ASST 7 cut(s) 51, 395, 535, 583, 714, 790, 801
SfaNI GCATC 2 cut(s) 473, 751
SmiMI CAYNNNNRTG 2 cut(s) 61, 610
Sse9I AATT 7 cut(s) 402, 428, 776, 810, 887, 903, 947
SsiI CCGC 1 cut(s) 480
SspI AATATT 3 cut(s) 224, 515, 873
SspMI CTAG 3 cut(s) 114, 582, 806
StyI CCWWGG 4 cut(s) 129, 370, 526, 581
TaaI ACNGT 2 cut(s) 854, 928
TaiI ACGT 1 cut(s) 790
TaqI TCGA 1 cut(s) 148
TasI AATT 7 cut(s) 402, 428, 776, 810, 887, 903, 947
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 3 cut(s) 242, 728, 842
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 4 cut(s) 102, 369, 690, 786
TspRI CASTG 1 cut(s) 297
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 508
XmaJI CCTAGG 1 cut(s) 581
XspI CTAG 3 cut(s) 114, 582, 806
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.