Rh2BG498000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018108
Physical Location & Seq
Forward (+)
70361051 .. 70362221
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG498000.1

Sequence Viewer

Length: 426 bp
ATGATGACCTCCGAAACTCTCACATCTCGGAGAGATTTCGAGTCGGCTGGAGCGAGCTTCATTACTCATAGAGATGCTGAAGAGCTCTTGCCTCAGGTGAAACTCCTAGCATCTTTGCCGGAAGCCTCTTGCAGAGCTGCGGCGGAGTGTGCAACAGCACTGCTAGGCACTGACGCTGCAAGGCAATCAGGAACAGTAGCGGAAATTAGTCATCCATTAACATTATTTTGCAGCCGTTCTTATATGCACCACATTTTATTCAAGGACGATGTAGCTTCCACACATCTAGGAGAAAATCGTACTCCTAAGTCGAAATGGCCCAAGTTTACTTATTCACCAACAACGTACGTTAACGCTCATTACAATTGGAAGCGCAAGAAAGTGTTTGTTGCAAGACAATCAGAAAAACTTTTGAAAACTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.84

Weight (kDa)

9.24

Isoelectric Point (pI)

58.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018108)

Species Orthologous Gene IDs
malus_domestica MD08G1122100.v1.1
rosa_laevigata RLG00000020540
rosa_multiflora Rmu_sc0001102.1_g000001
rosa_roxburghii Rroxscaffold_2G00096540 Rroxscaffold_2G00096580
rosa_samantha Rh2BG498000 Rh2BG498400 Rh2DG508900 Rh2DG509200
rosa_wichuraiana Rw2G039820 Rw2G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 140, 143, 200
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 301, 347
AgsI TTSAA 2 cut(s) 262, 415
AluBI AGCT 4 cut(s) 57, 85, 137, 275
AluI AGCT 4 cut(s) 57, 85, 137, 275
Alw21I GWGCWC 1 cut(s) 87
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 3 cut(s) 137, 176, 231
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 109, 327
AxyI CCTNAGG 1 cut(s) 93
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 124, 163, 243
BceAI ACGGC 1 cut(s) 219
BfaI CTAG 3 cut(s) 107, 164, 287
BisI GCNGC 4 cut(s) 138, 141, 177, 232
BlsI GCNGC 4 cut(s) 139, 142, 178, 233
BmgT120I GGNCC 1 cut(s) 318
BmsI GCATC 2 cut(s) 64, 119
BpmI CTGGAG 1 cut(s) 69
Bse21I CCTNAGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 124, 163, 243
BshFI GGCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 119
BsiWI CGTACG 1 cut(s) 345
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 3 cut(s) 140, 143, 200
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 93, 306
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 375
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 124, 163, 243
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 2 cut(s) 158, 168
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 318
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 300, 346
CviJI RGCY 8 cut(s) 47, 57, 85, 125, 137, 234, 275, 319
CviKI_1 RGCY 8 cut(s) 47, 57, 85, 125, 137, 234, 275, 319
CviQI GTAC 2 cut(s) 300, 346
DdeI CTNAG 2 cut(s) 93, 306
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 87
FaiI YATR 3 cut(s) 69, 243, 245
Fnu4HI GCNGC 4 cut(s) 138, 141, 177, 232
FokI GGATG 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 138, 141, 177, 232
FspBI CTAG 3 cut(s) 107, 164, 287
GlaI GCGC 1 cut(s) 374
GluI GCNGC 4 cut(s) 138, 141, 177, 232
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 375
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 1 cut(s) 41
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 109, 327
Hpy166II GTNNAC 2 cut(s) 327, 352
Hpy188I TCNGA 3 cut(s) 13, 30, 403
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 2 cut(s) 327, 352
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 344, 348
HpyCH4V TGCA 6 cut(s) 132, 152, 179, 231, 247, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 93, 306
HpySE526I ACGT 2 cut(s) 344, 348
HspAI GCGC 1 cut(s) 373
KspAI GTTAAC 1 cut(s) 352
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 4 cut(s) 33, 80, 132, 174
Lsp1109I GCAGC 3 cut(s) 124, 163, 243
LweI GCATC 2 cut(s) 64, 119
MaeI CTAG 3 cut(s) 107, 164, 287
MaeII ACGT 2 cut(s) 344, 348
MboII GAAGA 1 cut(s) 92
MfeI CAATTG 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 204, 364
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 3 cut(s) 19, 102, 136
MseI TTAA 2 cut(s) 218, 351
MslI CAYNNNNRTG 1 cut(s) 72
MspI CCGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 50
Pfl23II CGTACG 1 cut(s) 345
PkrI GCNGC 4 cut(s) 139, 142, 178, 233
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 87
PspLI CGTACG 1 cut(s) 345
PspPI GGNCC 1 cut(s) 318
RsaI GTAC 2 cut(s) 301, 347
RsaNI GTAC 2 cut(s) 300, 346
RseI CAYNNNNRTG 1 cut(s) 72
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 218, 351
SatI GCNGC 4 cut(s) 138, 141, 177, 232
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 87
SetI ASST 8 cut(s) 11, 59, 87, 99, 139, 277, 347, 351
SfaNI GCATC 2 cut(s) 64, 119
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 2 cut(s) 204, 364
SsiI CCGC 3 cut(s) 140, 143, 200
SspMI CTAG 3 cut(s) 107, 164, 287
SstI GAGCTC 1 cut(s) 87
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 2 cut(s) 347, 351
TaqI TCGA 2 cut(s) 39, 311
TasI AATT 2 cut(s) 204, 364
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 218, 351
Tru9I TTAA 2 cut(s) 218, 351
TscAI CASTG 2 cut(s) 165, 175
TseI GCWGC 3 cut(s) 137, 176, 231
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 2 cut(s) 165, 175
XspI CTAG 3 cut(s) 107, 164, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.