Rw2G039820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018108
Physical Location & Seq
Forward (+)
65306595 .. 65307761
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039820.1

Sequence Viewer

Length: 423 bp
ATGACCTCTGAAACTCTCACATCTCGGAGAGATTTCGAGTCGGCTGGAGCGAGCTTCATTACTCATAGAGATACTGAAGAGCTCTTGCCTCAGGTGAAACTCCTGGCATCTTTGCCGGAAGCCTCCTGCAGAGCTGCGGCGGAGTGTGCAACAGCACTGCTAGGCACTAACGCTGCAAGGCAATCAGGAACAATAGCGGAAATTAGTCATCCATTAACATTATTTTGCAGCCGTTCTTATATGCACCACATTTTATTCAAGGACGATGTAGCTTCCACACATCTAGGAGAAAATCGTACTCCTAAGTCGAAATGGCCCAAGTTTACTGATTCACCAACAACGTACGTTAACGCTCATTACAATTGGAAGCGCAAGAAAGTGTTTGTTGCAAGACAATCAGAAAAACTTTTGAAAACTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.71

Weight (kDa)

9.27

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018108)

Species Orthologous Gene IDs
malus_domestica MD08G1122100.v1.1
rosa_laevigata RLG00000020540
rosa_multiflora Rmu_sc0001102.1_g000001
rosa_roxburghii Rroxscaffold_2G00096540 Rroxscaffold_2G00096580
rosa_samantha Rh2BG498000 Rh2BG498400 Rh2DG508900 Rh2DG509200
rosa_wichuraiana Rw2G039820 Rw2G040250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 137, 140, 197
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 2 cut(s) 298, 344
AgsI TTSAA 2 cut(s) 259, 412
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 4 cut(s) 54, 82, 134, 272
AluI AGCT 4 cut(s) 54, 82, 134, 272
Alw21I GWGCWC 1 cut(s) 84
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 3 cut(s) 134, 173, 228
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 106, 324
AxyI CCTNAGG 1 cut(s) 90
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 121, 160, 240
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 104
BfaI CTAG 2 cut(s) 161, 284
BfmI CTRYAG 1 cut(s) 127
BisI GCNGC 4 cut(s) 135, 138, 174, 229
BlsI GCNGC 4 cut(s) 136, 139, 175, 230
Bme1390I CCNGG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 121, 160, 240
BshFI GGCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 116
BsiWI CGTACG 1 cut(s) 342
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 3 cut(s) 137, 140, 197
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 131
BspQI GCTCTTC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 90, 303
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 372
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 3 cut(s) 121, 160, 240
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 155, 418
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 2 cut(s) 297, 343
CviJI RGCY 8 cut(s) 44, 54, 82, 122, 134, 231, 272, 316
CviKI_1 RGCY 8 cut(s) 44, 54, 82, 122, 134, 231, 272, 316
CviQI GTAC 2 cut(s) 297, 343
DdeI CTNAG 2 cut(s) 90, 303
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 155
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 96
Eco81I CCTNAGG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 84
FaiI YATR 3 cut(s) 66, 240, 242
Fnu4HI GCNGC 4 cut(s) 135, 138, 174, 229
FokI GGATG 1 cut(s) 195
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 4 cut(s) 135, 138, 174, 229
FspBI CTAG 2 cut(s) 161, 284
GlaI GCGC 1 cut(s) 371
GluI GCNGC 4 cut(s) 135, 138, 174, 229
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 372
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 2 cut(s) 38, 329
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 106, 324
Hpy166II GTNNAC 2 cut(s) 324, 349
Hpy188I TCNGA 3 cut(s) 10, 27, 400
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 2 cut(s) 324, 349
HpyCH4IV ACGT 2 cut(s) 341, 345
HpyCH4V TGCA 6 cut(s) 129, 149, 176, 228, 244, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 90, 303
HpySE526I ACGT 2 cut(s) 341, 345
HspAI GCGC 1 cut(s) 370
KspAI GTTAAC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 7 cut(s) 30, 77, 89, 116, 129, 139, 171
Lsp1109I GCAGC 3 cut(s) 121, 160, 240
LweI GCATC 1 cut(s) 116
MaeI CTAG 2 cut(s) 161, 284
MaeII ACGT 2 cut(s) 341, 345
MboII GAAGA 1 cut(s) 89
MfeI CAATTG 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 2 cut(s) 201, 361
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 3 cut(s) 16, 99, 133
MseI TTAA 2 cut(s) 215, 348
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 1 cut(s) 329
Pfl23II CGTACG 1 cut(s) 342
PkrI GCNGC 4 cut(s) 136, 139, 175, 230
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspLI CGTACG 1 cut(s) 342
PspPI GGNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 131
RsaI GTAC 2 cut(s) 298, 344
RsaNI GTAC 2 cut(s) 297, 343
SacI GAGCTC 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 215, 348
SatI GCNGC 4 cut(s) 135, 138, 174, 229
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 8, 56, 84, 96, 136, 274, 344, 348
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 127
Sse9I AATT 2 cut(s) 201, 361
SsiI CCGC 3 cut(s) 137, 140, 197
SspMI CTAG 2 cut(s) 161, 284
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 102
TaiI ACGT 2 cut(s) 344, 348
TaqI TCGA 2 cut(s) 36, 308
TasI AATT 2 cut(s) 201, 361
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 215, 348
Tru9I TTAA 2 cut(s) 215, 348
TscAI CASTG 1 cut(s) 162
TseI GCWGC 3 cut(s) 134, 173, 228
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 162
XspI CTAG 2 cut(s) 161, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.