Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010392

Physical Location & Seq

Genomic Coordinates Forward (+)

27966168 .. 27971744

Gene Structure 5577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGGGTCCAGATTGCTCTTGATGCTGCTAGAGGTCTTGAGTACATCCATGAGCACACTAAAGCTCATTATGTCCACCGGGATATCAAGACAAGCAACATCTTGCTTGATGGTACCTTCAGGGGAAAGATTTCAGATTTTGGATTGGCAAAACTTGTTGGTAAAACAGGTGAAGGAGAAGCTACGGTAACCAAAGTTGTTGGTACATATGGTTATCTGGCTCCAGAATACTTGAGCGATGGGCGTGCTACTACAAAAAGTGATATTTATGCTTTTGGAGTTGTTCTCTTCGAGATTTTATCAGGCAAGGAGGCTGTTATACGAACTGAAGGCACAGTTATAAAAAATCCTGAAAGACGCTCACTGGTATCCATTATGCAAGCAGCTCTTAAAAGCGCACCTGACTCCATGAGTGTGTCGAGCTTGAAAGATTACATTGATCCAAATCTGATGGACTTGTATCCCCATGATTGTCTACTCAAGGTGGCCATGATAGCTAAGCAATGTGTAGATGAAGATCCCATCCTACGGCCTGACATGAAACAAATTGTTATTTCCCTGTCACAAATCCTCCTATCCTCGGTTGAGTGGGAAGCTACTCTTGCGGGGAACAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031348 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

215

Amino Acids

23.57

Weight (kDa)

6.21

Isoelectric Point (pI)

26.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 186	8.8e-28	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 184	3.3e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51940
fragaria_vesca	FvH4_6g32430 FvH4_6g32430
malus_domestica	MD09G1202500.v1.1 MD17G1183700.v1.1
prunus_persica	Prupe.3G058700_v2.0.a1 Prupe.3G058700_v2.0.a1
pyrus_communis	pycom09g11950 pycom17g19310
rosa_chinensis	RchiOBHm_Chr2g0140581
rosa_laevigata	RLG00000019879
rosa_multiflora	Rmu_ssc0000213.1_g000121
rosa_roxburghii	Rroxscaffold_153G00436620 Rroxscaffold_2G00104660
rosa_rugosa	Rorug02G0363700
rosa_samantha	Rh2BG424600 Rh2BG424800 Rh2CG401300 Rh2DG434700
rosa_wichuraiana	Rw2G033960 Rw2G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
Acc65I	GGTACC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	475
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	2 cut(s)	434, 512
AcoI	YGGCCR	1 cut(s)	486
AcuI	CTGAAG	2 cut(s)	103, 348
AfaI	GTAC	3 cut(s)	44, 115, 205
AfiI	CCNNNNNNNGG	3 cut(s)	528, 580, 637
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	6 cut(s)	65, 182, 386, 423, 497, 596
AluI	AGCT	6 cut(s)	65, 182, 386, 423, 497, 596
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	434, 512
AoxI	GGCC	3 cut(s)	486, 530, 628
ApeKI	GCWGC	2 cut(s)	26, 383
Asp700I	GAANNNNTTC	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	13, 395
BccI	CCATC	4 cut(s)	104, 233, 445, 530
BceAI	ACGGC	1 cut(s)	545
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	617
BciVI	GTATCC	2 cut(s)	379, 471
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	30
BfuI	GTATCC	2 cut(s)	379, 471
BisI	GCNGC	2 cut(s)	27, 384
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	2 cut(s)	28, 385
Bme1390I	CCNGG	2 cut(s)	80, 617
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	3 cut(s)	8, 115, 222
BmrFI	CCNGG	2 cut(s)	80, 617
BmsI	GCATC	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	3 cut(s)	59, 253, 464
BpuMI	CCSGG	1 cut(s)	80
BsaBI	GATNNNNATC	2 cut(s)	444, 516
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	528, 580, 637
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	509
Bse8I	GATNNNNATC	2 cut(s)	444, 516
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	2 cut(s)	45, 522
BseJI	GATNNNNATC	2 cut(s)	444, 516
BseLI	CCNNNNNNNGG	3 cut(s)	528, 580, 637
BseMI	GCAATG	1 cut(s)	509
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	13, 395
BshFI	GGCC	3 cut(s)	488, 532, 630
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	528, 580, 637
BsnI	GGCC	3 cut(s)	488, 532, 630
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	439, 517
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	3 cut(s)	488, 532, 630
BspLI	GGNNCC	3 cut(s)	8, 115, 222
BspPI	GGATC	2 cut(s)	434, 512
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	2 cut(s)	439, 517
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	187, 337
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	246, 381
BstDEI	CTNAG	1 cut(s)	498
BstEII	GGTNACC	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	2 cut(s)	45, 522
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	2 cut(s)	442, 520
BstMBI	GATC	2 cut(s)	439, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 494, 602
BstNI	CCWGG	1 cut(s)	617
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	78, 615
BstV1I	GCAGC	2 cut(s)	13, 395
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuI	GTATCC	2 cut(s)	379, 471
BsuRI	GGCC	3 cut(s)	488, 532, 630
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	45, 522
BtsIMutI	CAGTG	2 cut(s)	362, 631
Cac8I	GCNNGC	2 cut(s)	246, 381
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	3 cut(s)	43, 114, 204
CviAII	CATG	5 cut(s)	50, 409, 467, 490, 538
CviQI	GTAC	3 cut(s)	43, 114, 204
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	2 cut(s)	441, 519
DpnII	GATC	2 cut(s)	439, 517
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	103, 348
Eco91I	GGTNACC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	615
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	5 cut(s)	53, 412, 470, 493, 541
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 585, 617
FatI	CATG	5 cut(s)	49, 408, 466, 489, 537
FauI	CCCGC	1 cut(s)	598
FauNDI	CATATG	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	27, 384
FokI	GGATG	2 cut(s)	32, 509
Fsp4HI	GCNGC	2 cut(s)	27, 384
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	2 cut(s)	27, 384
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	488, 532, 630
HapII	CCGG	1 cut(s)	79
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	5 cut(s)	53, 412, 470, 493, 541
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	76, 476
Hpy188I	TCNGA	2 cut(s)	136, 450
Hpy188III	TCNNGA	7 cut(s)	10, 20, 38, 88, 224, 292, 350
Hpy8I	GTNNAC	2 cut(s)	76, 476
HpyAV	CCTTC	4 cut(s)	127, 167, 323, 636
HpyCH4III	ACNGT	2 cut(s)	187, 337
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 494, 602
HpyF3I	CTNAG	1 cut(s)	498
Hsp92II	CATG	5 cut(s)	53, 412, 470, 493, 541
HspAI	GCGC	1 cut(s)	396
KpnI	GGTACC	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	439, 517
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	13, 395
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	187, 561
MalI	GATC	2 cut(s)	441, 519
MboI	GATC	2 cut(s)	439, 517
MboII	GAAGA	2 cut(s)	280, 527
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	1 cut(s)	546
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	4 cut(s)	26, 304, 581, 589
Mox20I	TGGCCA	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	488
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	2 cut(s)	80, 617
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	3 cut(s)	23, 494, 602
NciI	CCSGG	1 cut(s)	80
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	439, 517
NlaIII	CATG	5 cut(s)	53, 412, 470, 493, 541
NlaIV	GGNNCC	3 cut(s)	8, 115, 222
NmuCI	GTSAC	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	28, 385
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	615
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	8, 115, 222
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	3 cut(s)	44, 115, 205
RsaNI	GTAC	3 cut(s)	43, 114, 204
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	27, 384
Sau3AI	GATC	2 cut(s)	439, 517
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	80, 617
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	3 cut(s)	38, 232, 479
SmoI	CTYRAG	3 cut(s)	38, 232, 479
Sse9I	AATT	1 cut(s)	546
SsiI	CCGC	1 cut(s)	605
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	78, 615
TaaI	ACNGT	2 cut(s)	187, 337
TaqI	TCGA	2 cut(s)	291, 419
TasI	AATT	1 cut(s)	546
TatI	WGTACW	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	2 cut(s)	369, 631
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	2 cut(s)	26, 383
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	2 cut(s)	528, 554
TspRI	CASTG	2 cut(s)	369, 631
VpaK11BI	GGWCC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.