Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010392

Physical Location & Seq

Genomic Coordinates Reverse (-)

55694460 .. 55695023

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G033960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCAAGCAGCTCTTAAAAGCGCACCTGACTCCATGAGTATGTCGAGCTTGAAAGATTACATTGATCCAAATCTGATGGACTTGTATCCTCATGATTGTCTACTCAAGGCGGCCATGATAGCTAAGCAATGTGTAGATGAAGATCCCATCCTACGGCCTGACATGAAACAAATTGTTATTTCCCTGTCACAAATCCTCCTATCCTCGGTTGAGTGGGAAGCTACTCTTGCGGGGAACAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031348 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

90

Amino Acids

9.88

Weight (kDa)

4.61

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51940
fragaria_vesca	FvH4_6g32430 FvH4_6g32430
malus_domestica	MD09G1202500.v1.1 MD17G1183700.v1.1
prunus_persica	Prupe.3G058700_v2.0.a1 Prupe.3G058700_v2.0.a1
pyrus_communis	pycom09g11950 pycom17g19310
rosa_chinensis	RchiOBHm_Chr2g0140581
rosa_laevigata	RLG00000019879
rosa_multiflora	Rmu_ssc0000213.1_g000121
rosa_roxburghii	Rroxscaffold_153G00436620 Rroxscaffold_2G00104660
rosa_rugosa	Rorug02G0363700
rosa_samantha	Rh2BG424600 Rh2BG424800 Rh2CG401300 Rh2DG434700
rosa_wichuraiana	Rw2G033960 Rw2G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	100
AciI	CCGC	2 cut(s)	110, 230
AclWI	GGATC	2 cut(s)	59, 137
AcoI	YGGCCR	1 cut(s)	111
AfiI	CCNNNNNNNGG	3 cut(s)	153, 205, 262
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	11, 48, 122, 221
AluI	AGCT	4 cut(s)	11, 48, 122, 221
AlwI	GGATC	2 cut(s)	59, 137
AoxI	GGCC	3 cut(s)	111, 155, 253
ApeKI	GCWGC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	70, 155
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	9, 111
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	2 cut(s)	10, 112
Bme1390I	CCNGG	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	2 cut(s)	69, 141
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 205, 262
Bse3DI	GCAATG	1 cut(s)	134
Bse8I	GATNNNNATC	2 cut(s)	69, 141
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	147
BseJI	GATNNNNATC	2 cut(s)	69, 141
BseLI	CCNNNNNNNGG	3 cut(s)	153, 205, 262
BseMI	GCAATG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	3 cut(s)	113, 157, 255
BslI	CCNNNNNNNGG	3 cut(s)	153, 205, 262
BsnI	GGCC	3 cut(s)	113, 157, 255
Bsp143I	GATC	2 cut(s)	64, 142
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	2 cut(s)	110, 230
BspANI	GGCC	3 cut(s)	113, 157, 255
BspHI	TCATGA	1 cut(s)	91
BspPI	GGATC	2 cut(s)	59, 137
BsrDI	GCAATG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	64, 142
Bst2UI	CCWGG	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	123
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	67, 145
BstMBI	GATC	2 cut(s)	64, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 227
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	113, 157, 255
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	23
CviAII	CATG	4 cut(s)	34, 92, 115, 163
CviJI	RGCY	8 cut(s)	11, 48, 113, 122, 157, 221, 240, 255
CviKI_1	RGCY	8 cut(s)	11, 48, 113, 122, 157, 221, 240, 255
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	66, 144
DpnII	GATC	2 cut(s)	64, 142
EaeI	YGGCCR	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	4 cut(s)	37, 95, 118, 166
FaiI	YATR	5 cut(s)	35, 41, 93, 116, 164
FalI	AAGNNNNNCTT	3 cut(s)	29, 210, 242
FatI	CATG	4 cut(s)	33, 91, 114, 162
FauI	CCCGC	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	9, 111
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	9, 111
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	2 cut(s)	9, 111
HaeIII	GGCC	3 cut(s)	113, 157, 255
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	37, 95, 118, 166
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 227
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	37, 95, 118, 166
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	64, 142
LpnPI	CCDG	6 cut(s)	39, 171, 197, 227, 248, 254
Lsp1109I	GCAGC	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	2 cut(s)	66, 144
MboI	GATC	2 cut(s)	64, 142
MboII	GAAGA	1 cut(s)	152
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	3 cut(s)	99, 206, 214
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	119, 227
NdeII	GATC	2 cut(s)	64, 142
NlaIII	CATG	4 cut(s)	37, 95, 118, 166
NmuCI	GTSAC	1 cut(s)	186
PagI	TCATGA	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	10, 112
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	9, 111
Sau3AI	GATC	2 cut(s)	64, 142
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	7 cut(s)	13, 28, 50, 124, 223, 246, 272
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	110, 230
StyD4I	CCNGG	1 cut(s)	240
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	171
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	153, 179
TspRI	CASTG	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.