Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010392

Physical Location & Seq

Genomic Coordinates Reverse (-)

59831284 .. 59831814

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG424600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGTATGTCGAGCTTGAAAGATTACATTGATCCAAATCTGATGGACTTGTATCCTCATGATTGTCTACTCAAGGCGGCCATGATAGCTAAGCAATGTGTAGATGAAGATCCCATCCTACGGCCTGACATGAAACAAATTGTTATTTCCCTGTCACAAATCGTCCTATCCTCGGTTGAGTGGGAAGCTACTCTTGCGGGGGACAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031348 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

79

Amino Acids

8.77

Weight (kDa)

4.43

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51940
fragaria_vesca	FvH4_6g32430 FvH4_6g32430
malus_domestica	MD09G1202500.v1.1 MD17G1183700.v1.1
prunus_persica	Prupe.3G058700_v2.0.a1 Prupe.3G058700_v2.0.a1
pyrus_communis	pycom09g11950 pycom17g19310
rosa_chinensis	RchiOBHm_Chr2g0140581
rosa_laevigata	RLG00000019879
rosa_multiflora	Rmu_ssc0000213.1_g000121
rosa_roxburghii	Rroxscaffold_153G00436620 Rroxscaffold_2G00104660
rosa_rugosa	Rorug02G0363700
rosa_samantha	Rh2BG424600 Rh2BG424800 Rh2CG401300 Rh2DG434700
rosa_wichuraiana	Rw2G033960 Rw2G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	67
AciI	CCGC	2 cut(s)	77, 197
AclWI	GGATC	2 cut(s)	26, 104
AcoI	YGGCCR	1 cut(s)	78
AfiI	CCNNNNNNNGG	3 cut(s)	120, 172, 229
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	15, 89, 188
AluI	AGCT	3 cut(s)	15, 89, 188
AlwI	GGATC	2 cut(s)	26, 104
AoxI	GGCC	3 cut(s)	78, 122, 220
BccI	CCATC	2 cut(s)	37, 122
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	78
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	56
BsaBI	GATNNNNATC	2 cut(s)	36, 108
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 172, 229
Bse3DI	GCAATG	1 cut(s)	101
Bse8I	GATNNNNATC	2 cut(s)	36, 108
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	2 cut(s)	36, 108
BseLI	CCNNNNNNNGG	3 cut(s)	120, 172, 229
BseMI	GCAATG	1 cut(s)	101
BshFI	GGCC	3 cut(s)	80, 124, 222
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	120, 172, 229
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	80, 124, 222
Bsp143I	GATC	2 cut(s)	31, 109
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	77, 197
BspANI	GGCC	3 cut(s)	80, 124, 222
BspHI	TCATGA	1 cut(s)	58
BspPI	GGATC	2 cut(s)	26, 104
BsrDI	GCAATG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	31, 109
Bst2UI	CCWGG	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	34, 112
BstMBI	GATC	2 cut(s)	31, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 194
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	80, 124, 222
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	223
CciI	TCATGA	1 cut(s)	58
CviAII	CATG	3 cut(s)	59, 82, 130
CviJI	RGCY	7 cut(s)	15, 80, 89, 124, 188, 207, 222
CviKI_1	RGCY	7 cut(s)	15, 80, 89, 124, 188, 207, 222
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	2 cut(s)	33, 111
DpnII	GATC	2 cut(s)	31, 109
EaeI	YGGCCR	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	3 cut(s)	62, 85, 133
FaiI	YATR	4 cut(s)	8, 60, 83, 131
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	58, 81, 129
FauI	CCCGC	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	80, 124, 222
Hin1II	CATG	3 cut(s)	62, 85, 133
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 194
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	62, 85, 133
Kzo9I	GATC	2 cut(s)	31, 109
LpnPI	CCDG	5 cut(s)	138, 164, 194, 215, 221
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	2 cut(s)	33, 111
MboI	GATC	2 cut(s)	31, 109
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	1 cut(s)	138
MnlI	CCTC	2 cut(s)	66, 181
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	86, 194
NdeII	GATC	2 cut(s)	31, 109
NlaIII	CATG	3 cut(s)	62, 85, 133
NmuCI	GTSAC	1 cut(s)	153
PagI	TCATGA	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	109
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	31, 109
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	5 cut(s)	17, 91, 190, 213, 239
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	77, 197
StyD4I	CCNGG	1 cut(s)	207
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	138
TauI	GCSGC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	120, 146
TspRI	CASTG	1 cut(s)	223
XagI	CCTNNNNNAGG	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.