Rroxscaffold_2G00106730
HSP70 Family

Belongs to the heat shock protein 70 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
30321184 .. 30323218
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106730.1

Sequence Viewer

Length: 1464 bp
ATGAGTGTGGTGGGATTTGATTTTGGCAATGAGAGTGGCATTGTGGCCGTGGCAAGGCAGAGGAGTATTGATGTCGTGCTCAATGACGAGTCCAAATGTGAAACTCCTGCCATTGTTTGTTTCGGGGAAAAGCAGCGGTTCATTGGGACCGCAGGCGCCGCTTCGTCTGTGATGAACCCAAAGAACACGATTTCGCAGATCAAGCGCTTGGTTGGAAAGAAATTCTCGGATCCCGTGTTGCAGAGGGATATCAAGTCCCTGCCTTTTGCTGTTACTGAAGGGCCTGATGGATATCCATTGATCCATGCCCGTTATTTGGGAGAAGCCAAGACATTCACGCCCACCCAAGTTTTGGGAATGGTGTTCTCTGATCTGAAAATCATAGCCCAGAAGAATCTTAATGCAGCAGTTGTAGACTGCTGTATAGGAATTCCGGTTTATTTCACTGATCTCCAAAGAAGAGCTGTTGAGGATGCAGCAAGAATTGCTGGGTTGAACCCTCTTAGGTTGTTTCATGAAACTACAGCAACTGCTTTAGCTTATGGAATCTACAAGACAGATTTACCAGAGAACGACCAATTGAATGTTGCCTTTGTTGATATTGGGCATGCTAGCATGCAAGTTTGCATTGCTGGCTTCAAGAAGGGGCAGCTGAAAGTTCTAGCTCATTCATTTGACCTGTCTTTGGGTGGTAGGGATTTTGATGAAGTACTGTTGCAGCACTTTGCGGCAAAATTTAAGGAAGAGTACAAGATAGATGTTTACCAGAATGCGAGGGCCTCCTTCGGCTTCGAGCTGCTTGAGCCTAGGAGAACTATGAATGCTAGTGAGTGTGTTGCCAGGGGTTGTGCTCTGCAGTGTGCAATGCTTAGTCCTACATTCAAAGTCCGAGAGTTTCAGGTGAATGAGAGCTTCCCATTCTCGATTGCTTTATCCTGGAAAGGTTCTGGTCCAGATTCCCAGAATGGAGGAGCGGATCAAACTAATATTGTCTTTCCCAAGGGAAATCCCATTCCAAGTTTCAAGGCTCTTACATTTTACAGATCTGGCACGTTTTCAGTTGATGTGCAGTATACTGATGTTGGTGATTTGCAGGCACCTGTAAAGATCAGTACATATACGATTGGTCCTTTCCAATCTAATAAAAGTGAGAGGGCGAAGGTGAAGGTCAAAGTTTGCTTGAATTTACATGGGATCGTATCTGTAGATTCAGCAACTCTTTTGGAAGAGGAAGAAGTTGAGGTTCCTACAAGAAAGTTTAAGAAAACAAACATTCCTGTGGTAGAGTTAGTTTATGGAGGAATGGCTCCAGCAGATGTGCAGAAGGCAATAGAAAGTGAATATGAGATGGCTTTACAAGATCGTGTTATGGAAAAACCAAAAGACAAGAAGACAGTCATTTCTGGAAATGTCCAGGGAACAAATAGTGAACTGTGGACCTATTTACATGTCTGGAAACTGTGA

Protein Analysis

487

Amino Acids

53.64

Weight (kDa)

7.04

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 3 - 260 9.1e-86 Hsp70 protein
HSP70 PF00012 268 - 424 7.3e-18 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 155, 1096
AccB7I CCANNNNNTGG 1 cut(s) 352
AccBSI CCGCTC 1 cut(s) 974
AccI GTMKAC 2 cut(s) 414, 1073
AciI CCGC 5 cut(s) 136, 150, 159, 728, 974
AclWI GGATC 5 cut(s) 224, 237, 295, 984, 1202
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 4 cut(s) 221, 429, 734, 1183
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 3 cut(s) 711, 749, 1114
AfeI AGCGCT 1 cut(s) 206
AfiI CCNNNNNNNGG 4 cut(s) 54, 316, 352, 685
AflIII ACRYGT 1 cut(s) 1447
AgsI TTSAA 6 cut(s) 496, 583, 640, 883, 1024, 1183
AjnI CCWGG 3 cut(s) 839, 935, 1413
AluBI AGCT 6 cut(s) 464, 539, 652, 665, 796, 912
AluI AGCT 6 cut(s) 464, 539, 652, 665, 796, 912
Alw21I GWGCWC 2 cut(s) 81, 853
AlwI GGATC 5 cut(s) 224, 237, 295, 984, 1202
AlwNI CAGNNNCTG 1 cut(s) 530
Aor51HI AGCGCT 1 cut(s) 206
AoxI GGCC 3 cut(s) 45, 281, 777
ApeKI GCWGC 6 cut(s) 133, 404, 476, 649, 718, 796
ApoI RAATTY 4 cut(s) 221, 429, 734, 1183
AspA2I CCTAGG 1 cut(s) 806
AspLEI GCGC 2 cut(s) 158, 207
AspS9I GGNCC 6 cut(s) 147, 281, 777, 950, 1127, 1437
AsuHPI GGTGA 3 cut(s) 913, 1097, 1174
AsuNHI GCTAGC 1 cut(s) 611
AvaII GGWCC 4 cut(s) 147, 950, 1127, 1437
AvrII CCTAGG 1 cut(s) 806
BamHI GGATCC 1 cut(s) 229
BanI GGYRCC 2 cut(s) 155, 1096
BbsI GAAGAC 1 cut(s) 1397
Bbv12I GWGCWC 2 cut(s) 81, 853
BbvI GCAGC 6 cut(s) 145, 416, 488, 661, 730, 783
BccI CCATC 2 cut(s) 281, 1342
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 841, 937, 1415
BfaI CTAG 4 cut(s) 612, 662, 807, 825
BfmI CTRYAG 3 cut(s) 522, 854, 1203
BfoI RGCGCY 2 cut(s) 159, 208
BglII AGATCT 1 cut(s) 1043
BisI GCNGC 8 cut(s) 134, 159, 405, 477, 650, 719, 729, 797
BlnI CCTAGG 1 cut(s) 806
BlsI GCNGC 8 cut(s) 135, 160, 406, 478, 651, 720, 730, 798
BmcAI AGTACT 1 cut(s) 711
Bme1390I CCNGG 3 cut(s) 841, 937, 1415
Bme18I GGWCC 4 cut(s) 147, 950, 1127, 1437
BmgT120I GGNCC 6 cut(s) 147, 281, 777, 950, 1127, 1437
BmiI GGNNCC 6 cut(s) 148, 157, 231, 1098, 1245, 1308
BmrFI CCNGG 3 cut(s) 841, 937, 1415
BmsI GCATC 1 cut(s) 463
BmtI GCTAGC 1 cut(s) 615
BpiI GAAGAC 1 cut(s) 1397
BpmI CTGGAG 1 cut(s) 1293
BpuEI CTTGAG 1 cut(s) 821
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 5 cut(s) 48, 806, 840, 999, 1414
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 316, 352, 685
Bse3DI GCAATG 3 cut(s) 34, 627, 870
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 3 cut(s) 841, 937, 1415
BseDI CCNNGG 5 cut(s) 48, 806, 840, 999, 1414
BseGI GGATG 1 cut(s) 478
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 4 cut(s) 54, 316, 352, 685
BseMI GCAATG 3 cut(s) 34, 627, 870
BseRI GAGGAG 2 cut(s) 76, 984
BseXI GCAGC 6 cut(s) 145, 416, 488, 661, 730, 783
BseYI CCCAGC 1 cut(s) 488
BsgI GTGCAG 2 cut(s) 1088, 1340
BshFI GGCC 3 cut(s) 47, 283, 779
BshNI GGYRCC 2 cut(s) 155, 1096
BsiHKAI GWGCWC 2 cut(s) 81, 853
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 160, 241
BslI CCNNNNNNNGG 4 cut(s) 54, 316, 352, 685
BsmFI GGGAC 2 cut(s) 160, 241
BsmI GAATGC 2 cut(s) 775, 826
BsnI GGCC 3 cut(s) 47, 283, 779
Bsp1286I GDGCHC 2 cut(s) 81, 853
BspACI CCGC 5 cut(s) 136, 150, 159, 728, 974
BspANI GGCC 3 cut(s) 47, 283, 779
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 6 cut(s) 148, 157, 231, 1098, 1245, 1308
BspMAI CTGCAG 1 cut(s) 858
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 5 cut(s) 224, 237, 295, 984, 1202
BspQI GCTCTTC 1 cut(s) 454
BspT107I GGYRCC 2 cut(s) 155, 1096
BsrBI CCGCTC 1 cut(s) 974
BsrDI GCAATG 3 cut(s) 34, 627, 870
BssECI CCNNGG 5 cut(s) 48, 806, 840, 999, 1414
BssNAI GTATAC 1 cut(s) 1074
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 806, 999
Bst1107I GTATAC 1 cut(s) 1074
Bst2UI CCWGG 3 cut(s) 841, 937, 1415
Bst4CI ACNGT 4 cut(s) 714, 1396, 1434, 1461
Bst6I CTCTTC 3 cut(s) 454, 738, 1221
BstACI GRCGYC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 485
BstC8I GCNNGC 6 cut(s) 154, 609, 613, 617, 634, 1095
BstDEI CTNAG 2 cut(s) 503, 869
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 478
BstH2I RGCGCY 2 cut(s) 159, 208
BstHHI GCGC 2 cut(s) 158, 207
BstMWI GCNNNNNNNGC 5 cut(s) 158, 202, 485, 633, 802
BstNI CCWGG 3 cut(s) 841, 937, 1415
BstNSI RCATGY 3 cut(s) 611, 619, 1451
BstSCI CCNGG 3 cut(s) 839, 935, 1413
BstSFI CTRYAG 3 cut(s) 522, 854, 1203
BstV1I GCAGC 6 cut(s) 145, 416, 488, 661, 730, 783
BstV2I GAAGAC 1 cut(s) 1397
BstX2I RGATCY 2 cut(s) 229, 1043
BstYI RGATCY 2 cut(s) 229, 1043
BstZ17I GTATAC 1 cut(s) 1074
BsuRI GGCC 3 cut(s) 47, 283, 779
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 863
BtsIMutI CAGTG 2 cut(s) 444, 863
Cac8I GCNNGC 6 cut(s) 154, 609, 613, 617, 634, 1095
CaiI CAGNNNCTG 1 cut(s) 530
CciI TCATGA 1 cut(s) 514
CfoI GCGC 2 cut(s) 158, 207
Cfr13I GGNCC 6 cut(s) 147, 281, 777, 950, 1127, 1437
Csp6I GTAC 3 cut(s) 710, 748, 1113
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 6 cut(s) 305, 515, 608, 616, 1190, 1448
CviQI GTAC 3 cut(s) 710, 748, 1113
DdeI CTNAG 2 cut(s) 503, 869
DinI GGCGCC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 3 cut(s) 454, 738, 1221
EarI CTCTTC 3 cut(s) 454, 738, 1221
Eco130I CCWWGG 2 cut(s) 806, 999
Eco32I GATATC 2 cut(s) 250, 293
Eco47I GGWCC 4 cut(s) 147, 950, 1127, 1437
Eco47III AGCGCT 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 2 cut(s) 281, 777
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 3 cut(s) 839, 935, 1413
EcoRV GATATC 2 cut(s) 250, 293
EcoT14I CCWWGG 2 cut(s) 806, 999
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 806, 999
FaeI CATG 6 cut(s) 308, 518, 611, 619, 1193, 1451
FaqI GGGAC 2 cut(s) 160, 241
FatI CATG 6 cut(s) 304, 514, 607, 615, 1189, 1447
FblI GTMKAC 2 cut(s) 414, 1073
Fnu4HI GCNGC 8 cut(s) 134, 159, 405, 477, 650, 719, 729, 797
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 8 cut(s) 134, 159, 405, 477, 650, 719, 729, 797
FspBI CTAG 4 cut(s) 612, 662, 807, 825
GlaI GCGC 2 cut(s) 157, 206
GluI GCNGC 8 cut(s) 134, 159, 405, 477, 650, 719, 729, 797
GsaI CCCAGC 1 cut(s) 492
GsuI CTGGAG 1 cut(s) 1293
HaeII RGCGCY 2 cut(s) 159, 208
HaeIII GGCC 3 cut(s) 47, 283, 779
HapII CCGG 1 cut(s) 434
HhaI GCGC 2 cut(s) 158, 207
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 6 cut(s) 308, 518, 611, 619, 1193, 1451
Hin6I GCGC 2 cut(s) 156, 205
HinP1I GCGC 2 cut(s) 156, 205
HinfI GANTC 5 cut(s) 89, 394, 546, 956, 1208
HpaII CCGG 1 cut(s) 434
HphI GGTGA 3 cut(s) 913, 1097, 1174
Hpy166II GTNNAC 5 cut(s) 415, 763, 1074, 1430, 1437
Hpy188I TCNGA 4 cut(s) 229, 370, 375, 890
Hpy188III TCNNGA 6 cut(s) 515, 640, 922, 953, 1404, 1453
Hpy8I GTNNAC 5 cut(s) 415, 763, 1074, 1430, 1437
HpyAV CCTTC 6 cut(s) 272, 637, 793, 1153, 1159, 1318
HpyCH4III ACNGT 4 cut(s) 714, 1396, 1434, 1461
HpyCH4IV ACGT 1 cut(s) 1052
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 202, 485, 633, 802
HpyF3I CTNAG 2 cut(s) 503, 869
HpySE526I ACGT 1 cut(s) 1052
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 6 cut(s) 308, 518, 611, 619, 1193, 1451
HspAI GCGC 2 cut(s) 156, 205
KasI GGCGCC 1 cut(s) 155
LguI GCTCTTC 1 cut(s) 454
LmnI GCTCC 2 cut(s) 971, 1312
Lsp1109I GCAGC 6 cut(s) 145, 416, 488, 661, 730, 783
LweI GCATC 1 cut(s) 463
MaeI CTAG 4 cut(s) 612, 662, 807, 825
MaeII ACGT 1 cut(s) 1052
MaeIII GTNAC 1 cut(s) 271
MbiI CCGCTC 1 cut(s) 974
MboII GAAGA 6 cut(s) 403, 471, 755, 1238, 1244, 1402
MfeI CAATTG 1 cut(s) 578
MflI RGATCY 2 cut(s) 229, 1043
MhlI GDGCHC 2 cut(s) 81, 853
MluCI AATT 6 cut(s) 221, 429, 483, 578, 734, 1183
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 193
MseI TTAA 3 cut(s) 399, 738, 1260
MslI CAYNNNNRTG 1 cut(s) 1277
MspA1I CMGCKG 2 cut(s) 136, 652
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 3 cut(s) 841, 937, 1415
MunI CAATTG 1 cut(s) 578
Mva1269I GAATGC 2 cut(s) 775, 826
MvaI CCWGG 3 cut(s) 841, 937, 1415
MwoI GCNNNNNNNGC 5 cut(s) 158, 202, 485, 633, 802
NarI GGCGCC 1 cut(s) 156
NheI GCTAGC 1 cut(s) 611
NlaIII CATG 6 cut(s) 308, 518, 611, 619, 1193, 1451
NlaIV GGNNCC 6 cut(s) 148, 157, 231, 1098, 1245, 1308
NspI RCATGY 3 cut(s) 611, 619, 1451
PaeI GCATGC 2 cut(s) 611, 619
PagI TCATGA 1 cut(s) 514
PciI ACATGT 1 cut(s) 1447
PciSI GCTCTTC 1 cut(s) 454
PctI GAATGC 2 cut(s) 775, 826
PfeI GAWTC 4 cut(s) 394, 546, 956, 1208
PflMI CCANNNNNTGG 1 cut(s) 352
PfoI TCCNGGA 1 cut(s) 935
PkrI GCNGC 8 cut(s) 135, 160, 406, 478, 651, 720, 730, 798
PleI GAGTC 1 cut(s) 97
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 97
PscI ACATGT 1 cut(s) 1447
Psp6I CCWGG 3 cut(s) 839, 935, 1413
PspFI CCCAGC 1 cut(s) 488
PspGI CCWGG 3 cut(s) 839, 935, 1413
PspN4I GGNNCC 6 cut(s) 148, 157, 231, 1098, 1245, 1308
PspPI GGNCC 6 cut(s) 147, 281, 777, 950, 1127, 1437
PstI CTGCAG 1 cut(s) 858
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 2 cut(s) 229, 1043
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 3 cut(s) 711, 749, 1114
RsaNI GTAC 3 cut(s) 710, 748, 1113
RseI CAYNNNNRTG 1 cut(s) 1277
SapI GCTCTTC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 399, 738, 1260
SatI GCNGC 8 cut(s) 134, 159, 405, 477, 650, 719, 729, 797
Sau96I GGNCC 6 cut(s) 147, 281, 777, 950, 1127, 1437
ScaI AGTACT 1 cut(s) 711
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 841, 937, 1415
SduI GDGCHC 2 cut(s) 81, 853
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 3 cut(s) 522, 854, 1203
SfoI GGCGCC 1 cut(s) 157
SinI GGWCC 4 cut(s) 147, 950, 1127, 1437
SmiMI CAYNNNNRTG 1 cut(s) 1277
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
SphI GCATGC 2 cut(s) 611, 619
Sse9I AATT 6 cut(s) 221, 429, 483, 578, 734, 1183
SsiI CCGC 5 cut(s) 136, 150, 159, 728, 974
SspDI GGCGCC 1 cut(s) 155
SspI AATATT 1 cut(s) 988
SspMI CTAG 4 cut(s) 612, 662, 807, 825
StyD4I CCNGG 3 cut(s) 839, 935, 1413
StyI CCWWGG 2 cut(s) 806, 999
TaaI ACNGT 4 cut(s) 714, 1396, 1434, 1461
TaiI ACGT 1 cut(s) 1055
TaqI TCGA 2 cut(s) 792, 923
TasI AATT 6 cut(s) 221, 429, 483, 578, 734, 1183
TatI WGTACW 3 cut(s) 709, 747, 1112
TauI GCSGC 2 cut(s) 161, 731
TfiI GAWTC 4 cut(s) 394, 546, 956, 1208
Tru1I TTAA 3 cut(s) 399, 738, 1260
Tru9I TTAA 3 cut(s) 399, 738, 1260
TscAI CASTG 2 cut(s) 451, 863
TseI GCWGC 6 cut(s) 133, 404, 476, 649, 718, 796
TspDTI ATGAA 7 cut(s) 130, 188, 503, 531, 660, 720, 833
TspRI CASTG 2 cut(s) 451, 863
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 4 cut(s) 147, 950, 1127, 1437
XapI RAATTY 4 cut(s) 221, 429, 734, 1183
XceI RCATGY 3 cut(s) 611, 619, 1451
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmaJI CCTAGG 1 cut(s) 806
XmiI GTMKAC 2 cut(s) 414, 1073
XspI CTAG 4 cut(s) 612, 662, 807, 825
ZrmI AGTACT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.