Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002937

Physical Location & Seq

Genomic Coordinates Reverse (-)

43463714 .. 43466450

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0347300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCATGTTCTTGGAGGTGGAGGCCATGGCGGGTTTTGGGGTTGGGACTCTCTACCAAAGAAACCCAAACAACAAAGAAAGCGATTCGATTCCAAATCCTCCAATTCTGTCGAGGCAAACGGAGGACCCGGTTTCCGGTTCCCGTTACAGCAAGCAGTGACGGCTGGCTCACTGGCTCTAACCGGAGACACAATTGCTCAGCTCAGAGAGCACTGGAGAAAGGCCAAGACTTTAGACCAACAAAGCAGCTCCACACCCACCTCTCAGGATGTTACTCAAGCTCTCTTATCAGACCACGATTGGCTTCGTGCACTTCGGATGACTTCCTATGGGTTTCTGTTGTACGGCCCTGGCTCATATGCTTGGTACCAGTATCTTGATCATGCTTTGCCAGGGAAAACAGTAGTGAACCTTTTGTTGAAGGTTTTATTGAACCAAGTTGTGCTTGGTCCATCTGTGATTGCTGTTGTTTTTGCATGGAACAATTTATGGCAAGGGAAACTCTCACAGCTTCCAGAGAAATACCGTAAAGATGCTCTTCCCACATTACTTTATGGATTTAGGTTCTGGATACCCGTCAGTCTATTAAACTTCTGGGTTGTACCTCTTCAAGCCCGTGTAGCTTTCATGTGTGTGGGTTCAATATTCTGGAACTTCTGCTTGTCTTCAACAATGAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

227

Amino Acids

25.44

Weight (kDa)

9.84

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpv17_PMP22	PF04117	163 - 222	7.9e-16	Mpv17 / PMP22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79920 AT1G79920 AT1G79920 AT1G79920 AT1G79930 AT1G79930
fragaria_vesca	FvH4_6g31170 FvH4_6g31170 FvH4_6g31170 FvH4_6g31170
malus_domestica	MD09G1212600.v1.1 MD09G1213000.v1.1 MD09G1213700.v1.1
prunus_persica	Prupe.3G071300_v2.0.a1 Prupe.3G071300_v2.0.a1 Prupe.3G071300_v2.0.a1
pyrus_communis	pycom09g13020 pycom17g20100
rosa_chinensis	RchiOBHm_Chr2g0137851 RchiOBHm_Chr2g0137861
rosa_laevigata	RLG00000019681 RLG00000019684
rosa_multiflora	Rmu_sc0002170.1_g000008 Rmu_sc0002170.1_g000011 Rmu_sc0007548.1_g000005
rosa_roxburghii	Rroxscaffold_2G00106730 Rroxscaffold_2G00106760
rosa_rugosa	Rorug02G0347100 Rorug02G0347100 Rorug02G0347200 Rorug02G0347300
rosa_samantha	Rh2AG393500 Rh2AG393700 Rh2BG401000 Rh2CG380200 Rh2CG380400 Rh2DG416000
rosa_wichuraiana	Rw2G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	366
AciI	CCGC	1 cut(s)	30
AfaI	GTAC	3 cut(s)	344, 368, 603
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	5 cut(s)	421, 433, 611, 642, 669
AjnI	CCWGG	2 cut(s)	349, 391
AluBI	AGCT	5 cut(s)	202, 249, 281, 511, 623
AluI	AGCT	5 cut(s)	202, 249, 281, 511, 623
Alw21I	GWGCWC	2 cut(s)	213, 313
Alw26I	GTCTC	1 cut(s)	180
Alw44I	GTGCAC	1 cut(s)	309
AoxI	GGCC	3 cut(s)	22, 222, 346
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	246
Asp718I	GGTACC	1 cut(s)	366
AspS9I	GGNCC	3 cut(s)	125, 347, 449
AsuC2I	CCSGG	1 cut(s)	129
AvaII	GGWCC	2 cut(s)	125, 449
BaeGI	GKGCMC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	2 cut(s)	213, 313
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	460
BceAI	ACGGC	2 cut(s)	177, 361
BciT130I	CCWGG	2 cut(s)	351, 393
BciVI	GTATCC	1 cut(s)	564
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	1 cut(s)	247
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	3 cut(s)	129, 351, 393
Bme18I	GGWCC	2 cut(s)	125, 449
BmgT120I	GGNCC	3 cut(s)	125, 347, 449
BmiI	GGNNCC	3 cut(s)	127, 140, 368
BmrFI	CCNGG	3 cut(s)	129, 351, 393
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	235
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	25, 349, 392
BsaWI	WCCGGW	2 cut(s)	135, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	3 cut(s)	177, 218, 370
BseBI	CCWGG	2 cut(s)	351, 393
BseDI	CCNNGG	3 cut(s)	25, 349, 392
BseGI	GGATG	2 cut(s)	274, 324
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	212, 217, 278
BseNI	ACTGG	3 cut(s)	177, 218, 370
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	258
BshFI	GGCC	3 cut(s)	24, 224, 348
BshNI	GGYRCC	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	213, 313
BsiSI	CCGG	3 cut(s)	129, 136, 183
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	24, 224, 348
Bsp1286I	GDGCHC	2 cut(s)	213, 313
Bsp143I	GATC	1 cut(s)	379
Bsp1720I	GCTNAGC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	3 cut(s)	24, 224, 348
BspCNI	CTCAG	3 cut(s)	211, 216, 277
BspLI	GGNNCC	3 cut(s)	127, 140, 368
BspQI	GCTCTTC	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	366
BsrI	ACTGG	3 cut(s)	177, 218, 370
BssECI	CCNNGG	3 cut(s)	25, 349, 392
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	351, 393
Bst4CI	ACNGT	2 cut(s)	403, 527
Bst6I	CTCTTC	2 cut(s)	543, 612
BstC8I	GCNNGC	2 cut(s)	153, 166
BstDEI	CTNAG	3 cut(s)	198, 203, 264
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	274, 324
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 208, 620
BstNI	CCWGG	2 cut(s)	351, 393
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	127, 349, 391
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	24, 224, 348
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	274, 324
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	162, 170, 211
Cac8I	GCNNGC	2 cut(s)	153, 166
Cfr13I	GGNCC	3 cut(s)	125, 347, 449
Csp6I	GTAC	3 cut(s)	343, 367, 602
CviAII	CATG	5 cut(s)	5, 26, 383, 477, 628
CviQI	GTAC	3 cut(s)	343, 367, 602
DdeI	CTNAG	3 cut(s)	198, 203, 264
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	543, 612
EarI	CTCTTC	2 cut(s)	543, 612
Eco130I	CCWWGG	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	125, 449
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	349, 391
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	5 cut(s)	8, 29, 386, 480, 631
FalI	AAGNNNNNCTT	4 cut(s)	429, 461, 522, 554
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	4, 25, 382, 476, 627
FauI	CCCGC	1 cut(s)	23
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	2 cut(s)	281, 331
Fsp4HI	GCNGC	1 cut(s)	247
GluI	GCNGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	3 cut(s)	24, 224, 348
HapII	CCGG	3 cut(s)	129, 136, 183
Hin1II	CATG	5 cut(s)	8, 29, 386, 480, 631
HinfI	GANTC	3 cut(s)	47, 84, 89
HpaII	CCGG	3 cut(s)	129, 136, 183
Hpy166II	GTNNAC	2 cut(s)	311, 409
Hpy188I	TCNGA	3 cut(s)	206, 292, 318
Hpy188III	TCNNGA	5 cut(s)	266, 377, 515, 568, 649
Hpy8I	GTNNAC	2 cut(s)	311, 409
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	2 cut(s)	403, 527
HpyCH4V	TGCA	3 cut(s)	4, 311, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 208, 620
HpyF3I	CTNAG	3 cut(s)	198, 203, 264
Hsp92II	CATG	5 cut(s)	8, 29, 386, 480, 631
KpnI	GGTACC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	379
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	523
MaeIII	GTNAC	3 cut(s)	144, 157, 271
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	3 cut(s)	530, 599, 657
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	213, 313
MluCI	AATT	3 cut(s)	103, 192, 484
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	7 cut(s)	8, 14, 106, 109, 116, 271, 615
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	587
MslI	CAYNNNNRTG	1 cut(s)	632
MspI	CCGG	3 cut(s)	129, 136, 183
MspR9I	CCNGG	3 cut(s)	129, 351, 393
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	351, 393
MwoI	GCNNNNNNNGC	3 cut(s)	161, 208, 620
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	8, 29, 386, 480, 631
NlaIV	GGNNCC	3 cut(s)	127, 140, 368
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	84, 89
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	349, 391
PspGI	CCWGG	2 cut(s)	349, 391
PspN4I	GGNNCC	3 cut(s)	127, 140, 368
PspPI	GGNCC	3 cut(s)	125, 347, 449
PspPPI	RGGWCCY	1 cut(s)	125
RsaI	GTAC	3 cut(s)	344, 368, 603
RsaNI	GTAC	3 cut(s)	343, 367, 602
RseI	CAYNNNNRTG	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	3 cut(s)	125, 347, 449
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	129, 351, 393
SduI	GDGCHC	2 cut(s)	213, 313
SfaNI	GCATC	1 cut(s)	523
SinI	GGWCC	2 cut(s)	125, 449
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	3 cut(s)	103, 192, 484
SsiI	CCGC	1 cut(s)	30
SspI	AATATT	1 cut(s)	645
StyD4I	CCNGG	3 cut(s)	127, 349, 391
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	403, 527
TaqI	TCGA	2 cut(s)	87, 111
TasI	AATT	3 cut(s)	103, 192, 484
TfiI	GAWTC	2 cut(s)	84, 89
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	3 cut(s)	162, 177, 218
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	616
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	3 cut(s)	162, 177, 218
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	125, 449
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.