Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002937

Physical Location & Seq

Genomic Coordinates Reverse (-)

43459633 .. 43461680

Gene Structure 2048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0347200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACGAGCAGAAGAACCAACTCTAACAGTTCAGCCACATTTAATTGGAGACTTGCCTACCCTCCTCCTTCTCCTCCTCCTCCTTCTCCTCCTCCTCGTACCCATGATAATCCATATGGCTACTATTTTTCTTCTCCTCCTCCACCTTCCCTTTCTTCTCCTCCTCCGCCCTCCCTTTCTTCTCCTCTTAACCATCTTACTCCATATGACTACTTTTTTTCAATTGATGATGATGATGTTAATGATCACTGGCATTTCGAGGAACCTATTCAGCCCCTGTCAAATACCTTCCAAGTCACCCGAGTTACCAGAACAAGGAGGCCATTTGGGGGAGCGATAGGAGTAGCACAACCACCGGGCTTTGCAGGCTCACTAGCACCACCAGGTTCCCGAATTCATGCTTTGCTCCTCGACAATCCAAGGACTAGACAGATCCTCAGCGGCCAATGGACTCCGGCAGCTCCTAGACAGGAAGCCGACTCCAGGTTGACCTATAATGAGCAAAAGAAGGCATTGCAGAAGCTCAGGAAGCAGATATACAATCCTTTACGGAGAATATCGCCAACGGTCAACTTGTATTATAGAGGCACTCCTGTTCAAGACAGTGGCATAGGAAGAAATGAGGGTAAGAGGTGTACCATTTGCTTGGAAGATTTTGAGCCTAAAGAAGAGGTTATGCTCACCCCATGTAACCATATGTTTCATGAGGAATGCATTGTGCCATGGGTCAAGAGCAACGGTCGGTGCCCGGTCTGTAGGTATGGGATAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

258

Amino Acids

29.11

Weight (kDa)

8.9

Isoelectric Point (pI)

69.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	203 - 253	3.3e-10	RING-H2 zinc finger domain
zf-C3HC4_3	PF13920	209 - 256	1.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	211 - 253	1.1e-15	Ring finger domain
zf-C3HC4_2	PF13923	211 - 252	1.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	211 - 253	1.3e-08	zinc-RING finger domain
zf-RING_11	PF17123	212 - 239	3.2e-12	RING-like zinc finger
zf-C3HC4	PF00097	212 - 252	7.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	212 - 250	1.6e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79920 AT1G79920 AT1G79920 AT1G79920 AT1G79930 AT1G79930
fragaria_vesca	FvH4_6g31170 FvH4_6g31170 FvH4_6g31170 FvH4_6g31170
malus_domestica	MD09G1212600.v1.1 MD09G1213000.v1.1 MD09G1213700.v1.1
prunus_persica	Prupe.3G071300_v2.0.a1 Prupe.3G071300_v2.0.a1 Prupe.3G071300_v2.0.a1
pyrus_communis	pycom09g13020 pycom17g20100
rosa_chinensis	RchiOBHm_Chr2g0137851 RchiOBHm_Chr2g0137861
rosa_laevigata	RLG00000019681 RLG00000019684
rosa_multiflora	Rmu_sc0002170.1_g000008 Rmu_sc0002170.1_g000011 Rmu_sc0007548.1_g000005
rosa_roxburghii	Rroxscaffold_2G00106730 Rroxscaffold_2G00106760
rosa_rugosa	Rorug02G0347100 Rorug02G0347100 Rorug02G0347200 Rorug02G0347300
rosa_samantha	Rh2AG393500 Rh2AG393700 Rh2BG401000 Rh2CG380200 Rh2CG380400 Rh2DG416000
rosa_wichuraiana	Rw2G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	744
AciI	CCGC	2 cut(s)	167, 441
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	393
AfaI	GTAC	2 cut(s)	100, 637
AfiI	CCNNNNNNNGG	3 cut(s)	315, 329, 483
AgsI	TTSAA	2 cut(s)	222, 599
AjnI	CCWGG	2 cut(s)	382, 482
AluBI	AGCT	2 cut(s)	461, 523
AluI	AGCT	2 cut(s)	461, 523
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	427
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	2 cut(s)	320, 442
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	267
AsuC2I	CCSGG	2 cut(s)	357, 749
AsuHPI	GGTGA	2 cut(s)	289, 673
AvaI	CYCGRG	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	744
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	1 cut(s)	201
BciT130I	CCWGG	2 cut(s)	384, 484
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	2 cut(s)	357, 749
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	3 cut(s)	374, 426, 465
BfmI	CTRYAG	1 cut(s)	754
BisI	GCNGC	2 cut(s)	442, 459
BlsI	GCNGC	2 cut(s)	443, 460
Bme1390I	CCNGG	4 cut(s)	357, 384, 484, 749
BmeT110I	CYCGRG	1 cut(s)	300
BmiI	GGNNCC	3 cut(s)	264, 388, 746
BmrFI	CCNGG	4 cut(s)	357, 384, 484, 749
BpmI	CTGGAG	1 cut(s)	466
Bpu10I	CCTNAGC	2 cut(s)	437, 524
BpuMI	CCSGG	2 cut(s)	357, 749
BsaJI	CCNNGG	2 cut(s)	419, 722
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 329, 483
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	2 cut(s)	384, 484
BseDI	CCNNGG	2 cut(s)	419, 722
BseLI	CCNNNNNNNGG	3 cut(s)	315, 329, 483
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	2 cut(s)	451, 538
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	749
BseXI	GCAGC	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	2 cut(s)	322, 444
BshNI	GGYRCC	1 cut(s)	744
BsiEI	CGRYCG	1 cut(s)	742
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	356, 455, 749
BslI	CCNNNNNNNGG	3 cut(s)	315, 329, 483
BsmAI	GTCTC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	716
BsnI	GGCC	2 cut(s)	322, 444
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp143I	GATC	2 cut(s)	244, 432
Bsp19I	CCATGG	1 cut(s)	722
BspACI	CCGC	2 cut(s)	167, 441
BspANI	GGCC	2 cut(s)	322, 444
BspCNI	CTCAG	2 cut(s)	450, 537
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	3 cut(s)	264, 388, 746
BspPI	GGATC	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	419, 722
BssMI	GATC	2 cut(s)	244, 432
BssT1I	CCWWGG	2 cut(s)	419, 722
Bst2UI	CCWGG	2 cut(s)	384, 484
Bst4CI	ACNGT	4 cut(s)	29, 568, 605, 740
Bst6I	CTCTTC	1 cut(s)	663
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	437, 524
BstDSI	CCRYGG	1 cut(s)	722
BstKTI	GATC	2 cut(s)	247, 435
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	244, 432
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 529
BstNI	CCWGG	2 cut(s)	384, 484
BstSCI	CCNGG	4 cut(s)	355, 382, 482, 747
BstSFI	CTRYAG	1 cut(s)	754
BstSLI	GKGCMC	1 cut(s)	749
BstV1I	GCAGC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	322, 444
BtgI	CCRYGG	1 cut(s)	722
BtsIMutI	CAGTG	2 cut(s)	247, 610
Cac8I	GCNNGC	1 cut(s)	367
CaiI	CAGNNNCTG	1 cut(s)	277
CciI	TCATGA	1 cut(s)	703
CsiI	ACCWGGT	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	99, 636
CviAII	CATG	5 cut(s)	104, 398, 687, 704, 723
CviQI	GTAC	2 cut(s)	99, 636
DdeI	CTNAG	2 cut(s)	437, 524
DpnI	GATC	2 cut(s)	246, 434
DpnII	GATC	2 cut(s)	244, 432
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	419, 722
Eco88I	CYCGRG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	382, 482
EcoT14I	CCWWGG	2 cut(s)	419, 722
EcoT22I	ATGCAT	1 cut(s)	716
ErhI	CCWWGG	2 cut(s)	419, 722
FaeI	CATG	5 cut(s)	107, 401, 690, 707, 726
FatI	CATG	5 cut(s)	103, 397, 686, 703, 722
FauNDI	CATATG	3 cut(s)	115, 205, 696
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	442, 459
Fsp4HI	GCNGC	2 cut(s)	442, 459
FspBI	CTAG	3 cut(s)	374, 426, 465
GluI	GCNGC	2 cut(s)	442, 459
GsuI	CTGGAG	1 cut(s)	466
HaeIII	GGCC	2 cut(s)	322, 444
HapII	CCGG	3 cut(s)	356, 455, 749
Hin1II	CATG	5 cut(s)	107, 401, 690, 707, 726
HincII	GTYRAC	2 cut(s)	489, 571
HindII	GTYRAC	2 cut(s)	489, 571
HinfI	GANTC	2 cut(s)	451, 479
HpaII	CCGG	3 cut(s)	356, 455, 749
HphI	GGTGA	2 cut(s)	289, 673
Hpy166II	GTNNAC	3 cut(s)	489, 571, 636
Hpy188III	TCNNGA	5 cut(s)	390, 526, 599, 704, 730
Hpy8I	GTNNAC	3 cut(s)	489, 571, 636
HpyAV	CCTTC	5 cut(s)	78, 93, 156, 298, 502
HpyCH4III	ACNGT	4 cut(s)	29, 568, 605, 740
HpyCH4V	TGCA	3 cut(s)	365, 517, 714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 529
HpyF3I	CTNAG	2 cut(s)	437, 524
Hsp92II	CATG	5 cut(s)	107, 401, 690, 707, 726
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	244, 432
LmnI	GCTCC	3 cut(s)	332, 411, 466
Lsp1109I	GCAGC	1 cut(s)	470
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	3 cut(s)	374, 426, 465
MaeIII	GTNAC	4 cut(s)	295, 304, 689, 770
MalI	GATC	2 cut(s)	246, 434
MboI	GATC	2 cut(s)	244, 432
MboII	GAAGA	7 cut(s)	24, 123, 147, 171, 627, 662, 680
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	749
MluCI	AATT	3 cut(s)	43, 222, 393
MlyI	GAGTC	2 cut(s)	445, 473
Mph1103I	ATGCAT	1 cut(s)	716
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	3 cut(s)	42, 189, 240
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	3 cut(s)	356, 455, 749
MspR9I	CCNGG	4 cut(s)	357, 384, 484, 749
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	716
MvaI	CCWGG	2 cut(s)	384, 484
MwoI	GCNNNNNNNGC	2 cut(s)	366, 529
NciI	CCSGG	2 cut(s)	357, 749
NcoI	CCATGG	1 cut(s)	722
NdeI	CATATG	3 cut(s)	115, 205, 696
NdeII	GATC	2 cut(s)	244, 432
NlaIII	CATG	5 cut(s)	107, 401, 690, 707, 726
NlaIV	GGNNCC	3 cut(s)	264, 388, 746
NmuCI	GTSAC	2 cut(s)	295, 770
NsiI	ATGCAT	1 cut(s)	716
PagI	TCATGA	1 cut(s)	703
PctI	GAATGC	1 cut(s)	716
PdmI	GAANNNNTTC	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	443, 460
PleI	GAGTC	2 cut(s)	445, 473
PpsI	GAGTC	2 cut(s)	445, 473
Psp6I	CCWGG	2 cut(s)	382, 482
PspGI	CCWGG	2 cut(s)	382, 482
PspN4I	GGNNCC	3 cut(s)	264, 388, 746
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	432
RsaI	GTAC	2 cut(s)	100, 637
RsaNI	GTAC	2 cut(s)	99, 636
SaqAI	TTAA	3 cut(s)	42, 189, 240
SatI	GCNGC	2 cut(s)	442, 459
Sau3AI	GATC	2 cut(s)	244, 432
SchI	GAGTC	2 cut(s)	445, 473
ScrFI	CCNGG	4 cut(s)	357, 384, 484, 749
SduI	GDGCHC	1 cut(s)	749
SexAI	ACCWGGT	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	754
Sse9I	AATT	3 cut(s)	43, 222, 393
SsiI	CCGC	2 cut(s)	167, 441
SspMI	CTAG	3 cut(s)	374, 426, 465
StyD4I	CCNGG	4 cut(s)	355, 382, 482, 747
StyI	CCWWGG	2 cut(s)	419, 722
TaaI	ACNGT	4 cut(s)	29, 568, 605, 740
TaqI	TCGA	2 cut(s)	258, 411
TasI	AATT	3 cut(s)	43, 222, 393
TauI	GCSGC	1 cut(s)	444
Tru1I	TTAA	3 cut(s)	42, 189, 240
Tru9I	TTAA	3 cut(s)	42, 189, 240
TscAI	CASTG	2 cut(s)	254, 610
TseFI	GTSAC	2 cut(s)	295, 770
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	2 cut(s)	295, 770
TspDTI	ATGAA	2 cut(s)	386, 692
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	2 cut(s)	254, 610
XapI	RAATTY	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	3 cut(s)	374, 426, 465
Zsp2I	ATGCAT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.