Rroxscaffold_2G00114800

Ketol-acid reductoisomerase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
40900834 .. 40904937
4104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114800.1

Sequence Viewer

Length: 1566 bp
ATGCCGACGATTAAGCCCCCGCTGTCTCTTGATTTCGACACCTCTGTTTTCAACAAGGAGAAGATCAACCTCGCTGGTCACGATGAGTATATTGTAAAGGGAGGAAGGGACTTGTTCCATCTGCTGCCCGATGCTTTCAAGGGCATCAAGCAGATCGGTGTCATCGGTTGGGGTTCCCAGGGACCTGCTCAAGCTCAGAACTTGAGAGATTCTCTAGCTGAAGCAAAGTCGAATATTGTGGTCAAGATTGGGCTCAGGAAGGGATCCCGTTCATTTAATGAAGCTCGCGCAGCTGGTTTCACCGAGGAGAATGGGACTTTAGGTGATATATGGGAAACAATCTCAGAGAGTGATCTTGTGTTGCTACTAATCTCTGATTCTGCACAGGCAGATAATTATGAGAAAATATTTTCACACATGAAACCAAATAGCATACTTGGTCTTTCCCACGGTTTCCTTCTAGGGCATTTGCAGTCGGAGGGACTTGACTTTCCCAAGAACATCAGTGTAATTGCTGTATGCCCAAAGGGAATGGGTCCGTCAGTAAGGAGACTTTATGTCCAAGGCAAAGAAATAAATGGTGCGGGAATTAATTCAAGTTTTGCAGTCCACCAGGATGTTGATGGGAGAGCCACAGATGTGGCTCTGGGCTGGTCGGTTGCCCTTGGTTCTCCTTTCACATTTGTCACTACGCTAGAGCAGGAATACAAAAGTGACATCTTTGGCGAGCGAGGCATATTACTTGGTGCTGTTCATGGAATTGTGGAGTCCCTGTTCAGAAGATACACCGACAGCGGAATGAGTGAAGATTCTGCTTATAAAAATACTGTTGAATGTGTTACTGGAATTGTGTCAAGAACCATATCAACTAAGGGCATGCTGGAAATATACAGCTCTTTGTCTGAAGCTGACAAGAAGGAGTTCGAGACTGCATATAGTGCCTCCTATTATCCTTGCATGGACATCCTCTATGAATGCTATGAGGATGTAGCAAGTGGCAGTGAGATCCGCAGCGTTGTTTTGGCTGGGCGGCGATTTTATGAGAAAGATGGTCTTCCTGCCTTCCCTATGGGGAAGATTGATCAGACGCGCATGTGGAAAGTTGGTGAGCGTGTCCGATCGACTCGTCCAGCTGGTGATCTAGGCCCTCTACACCCTTTCACAGCTGGTGTTTTTGTGGCCCTGATGATGGCACAGATTGAAGTGTTAAGGAAGAAGGGGCACTCCTACTCAGAGATAATCAATGAAAGTGTAATTGAGTCGGTGGATTCTTTGAATCCTTTTATGCATGCTAGGGGAGTTTCTTTCATGGTTGATAATTGCTCAACAACAGCGCGGTTGGGATCAAGGAAATGGGCTCCAAGATTTGATTATATTTTAACTCAGCAAGCCTTGGTTGCCGTGGACAATGGTACACCCATCAATCAGGACCTCATTAGCAACTTCGTGTCAGATCCAGTGCATGGAGCCATTGAAGTATGTGCTCAACTGAGACCCACAGTTGATATTTCAGTGCCTGCTGATGCAGACTTTGTGCGACCAGAGTTGCGCCAATCTAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

57.06

Weight (kDa)

5.5

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KARI_N PF07991 50 - 224 1.3e-31 Acetohydroxy acid isomeroreductase, NADPH-binding domain
KARI_C PF01450 233 - 377 3.3e-34 Ketol-acid reductoisomerase, C-terminal domain
KARI_C PF01450 389 - 458 3.8e-07 Ketol-acid reductoisomerase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
Acc36I ACCTGC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 1463
AccII CGCG 3 cut(s) 288, 1090, 1336
AciI CCGC 6 cut(s) 20, 584, 795, 1009, 1030, 1336
AclWI GGATC 5 cut(s) 258, 271, 1000, 1351, 1448
AcuI CTGAAG 2 cut(s) 240, 924
AfaI GTAC 1 cut(s) 1414
AfiI CCNNNNNNNGG 2 cut(s) 1189, 1463
AgsI TTSAA 7 cut(s) 52, 139, 597, 833, 1202, 1276, 1475
AhdI GACNNNNNGTC 1 cut(s) 557
AjnI CCWGG 2 cut(s) 177, 612
AleI CACNNNNGTG 1 cut(s) 638
AloI GAACNNNNNNTCC 2 cut(s) 758, 790
AluBI AGCT 8 cut(s) 194, 218, 284, 293, 894, 908, 1133, 1166
AluI AGCT 8 cut(s) 194, 218, 284, 293, 894, 908, 1133, 1166
Alw21I GWGCWC 1 cut(s) 1486
Alw26I GTCTC 4 cut(s) 30, 544, 920, 1486
AlwI GGATC 5 cut(s) 258, 271, 1000, 1351, 1448
AlwNI CAGNNNCTG 1 cut(s) 1517
AoxI GGCC 2 cut(s) 1144, 1179
ApeKI GCWGC 3 cut(s) 124, 290, 1011
AseI ATTAAT 1 cut(s) 591
Asp700I GAANNNNTTC 2 cut(s) 592, 920
AspLEI GCGC 4 cut(s) 290, 1092, 1336, 1551
AspS9I GGNCC 5 cut(s) 182, 536, 1145, 1180, 1429
AsuHPI GGTGA 4 cut(s) 292, 335, 1118, 1148
AvaII GGWCC 3 cut(s) 182, 536, 1429
BaeGI GKGCMC 1 cut(s) 1224
BamHI GGATCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 255, 1360
BbsI GAAGAC 1 cut(s) 1046
Bbv12I GWGCWC 1 cut(s) 1486
BbvI GCAGC 3 cut(s) 111, 302, 1023
BccI CCATC 5 cut(s) 126, 617, 1043, 1183, 1427
BceAI ACGGC 1 cut(s) 1385
BciT130I CCWGG 2 cut(s) 179, 614
BclI TGATCA 1 cut(s) 1081
BcoDI GTCTC 4 cut(s) 30, 544, 920, 1486
BfaI CTAG 6 cut(s) 215, 461, 695, 1142, 1293, 1557
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 4 cut(s) 125, 291, 1012, 1031
BlsI GCNGC 4 cut(s) 126, 292, 1013, 1032
Bme1390I CCNGG 2 cut(s) 179, 614
Bme18I GGWCC 3 cut(s) 182, 536, 1429
BmeRI GACNNNNNGTC 1 cut(s) 557
BmgT120I GGNCC 5 cut(s) 182, 536, 1145, 1180, 1429
BmiI GGNNCC 6 cut(s) 175, 183, 265, 537, 1359, 1468
BmrFI CCNGG 2 cut(s) 179, 614
BmsI GCATC 3 cut(s) 121, 153, 1513
BpiI GAAGAC 1 cut(s) 1046
BplI GAGNNNNNCTC 2 cut(s) 196, 228
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 174, 223
BsaI GGTCTC 1 cut(s) 1486
BsaJI CCNNGG 8 cut(s) 177, 178, 303, 448, 562, 664, 1392, 1401
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bsc4I CCNNNNNNNGG 2 cut(s) 1189, 1463
Bse1I ACTGG 2 cut(s) 847, 1457
BseBI CCWGG 2 cut(s) 179, 614
BseDI CCNNGG 8 cut(s) 177, 178, 303, 448, 562, 664, 1392, 1401
BseGI GGATG 3 cut(s) 622, 963, 991
BseLI CCNNNNNNNGG 2 cut(s) 1189, 1463
BseMII CTCAG 6 cut(s) 209, 268, 357, 1245, 1397, 1481
BseNI ACTGG 2 cut(s) 847, 1457
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 1224
BseXI GCAGC 3 cut(s) 111, 302, 1023
BseYI CCCAGC 1 cut(s) 1025
BsgI GTGCAG 1 cut(s) 366
Bsh1236I CGCG 3 cut(s) 288, 1090, 1336
Bsh1285I CGRYCG 1 cut(s) 1121
BshFI GGCC 2 cut(s) 1146, 1181
BsiEI CGRYCG 1 cut(s) 1121
BsiHKAI GWGCWC 1 cut(s) 1486
BslFI GGGAC 5 cut(s) 122, 195, 328, 495, 754
BslI CCNNNNNNNGG 2 cut(s) 1189, 1463
BsmAI GTCTC 4 cut(s) 30, 544, 920, 1486
BsmFI GGGAC 5 cut(s) 122, 195, 328, 495, 754
BsmI GAATGC 1 cut(s) 980
BsnI GGCC 2 cut(s) 1146, 1181
Bso31I GGTCTC 1 cut(s) 1486
Bsp1286I GDGCHC 4 cut(s) 255, 1224, 1360, 1486
BspACI CCGC 6 cut(s) 20, 584, 795, 1009, 1030, 1336
BspANI GGCC 2 cut(s) 1146, 1181
BspCNI CTCAG 6 cut(s) 208, 267, 356, 1244, 1396, 1482
BspFNI CGCG 3 cut(s) 288, 1090, 1336
BspLI GGNNCC 6 cut(s) 175, 183, 265, 537, 1359, 1468
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 5 cut(s) 258, 271, 1000, 1351, 1448
BspTNI GGTCTC 1 cut(s) 1486
BsrI ACTGG 2 cut(s) 847, 1457
BssECI CCNNGG 8 cut(s) 177, 178, 303, 448, 562, 664, 1392, 1401
BssT1I CCWWGG 3 cut(s) 562, 664, 1392
Bst2UI CCWGG 2 cut(s) 179, 614
Bst4CI ACNGT 3 cut(s) 452, 829, 1501
BstAPI GCANNNNNTGC 1 cut(s) 938
BstC8I GCNNGC 6 cut(s) 286, 728, 878, 1290, 1389, 1518
BstDEI CTNAG 7 cut(s) 195, 254, 343, 870, 1231, 1383, 1490
BstDSI CCRYGG 2 cut(s) 448, 1401
BstF5I GGATG 3 cut(s) 622, 963, 991
BstFNI CGCG 3 cut(s) 288, 1090, 1336
BstHHI GCGC 4 cut(s) 290, 1092, 1336, 1551
BstMAI GTCTC 4 cut(s) 30, 544, 920, 1486
BstMCI CGRYCG 1 cut(s) 1121
BstMWI GCNNNNNNNGC 5 cut(s) 290, 732, 938, 1397, 1557
BstNI CCWGG 2 cut(s) 179, 614
BstNSI RCATGY 3 cut(s) 880, 1096, 1292
BstSCI CCNGG 2 cut(s) 177, 612
BstSLI GKGCMC 1 cut(s) 1224
BstUI CGCG 3 cut(s) 288, 1090, 1336
BstV1I GCAGC 3 cut(s) 111, 302, 1023
BstV2I GAAGAC 1 cut(s) 1046
BstX2I RGATCY 3 cut(s) 263, 1005, 1453
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 3 cut(s) 263, 1005, 1453
BsuRI GGCC 2 cut(s) 1146, 1181
BtgI CCRYGG 2 cut(s) 448, 1401
BtsCI GGATG 3 cut(s) 622, 963, 991
BtsI GCAGTG 1 cut(s) 1006
BtsIMutI CAGTG 4 cut(s) 511, 1006, 1464, 1518
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 6 cut(s) 286, 728, 878, 1290, 1389, 1518
CaiI CAGNNNCTG 1 cut(s) 1517
CfoI GCGC 4 cut(s) 290, 1092, 1336, 1551
Cfr13I GGNCC 5 cut(s) 182, 536, 1145, 1180, 1429
CseI GACGC 1 cut(s) 1096
Csp6I GTAC 1 cut(s) 1413
CviAII CATG 8 cut(s) 418, 755, 877, 958, 1093, 1289, 1309, 1463
CviQI GTAC 1 cut(s) 1413
DdeI CTNAG 7 cut(s) 195, 254, 343, 870, 1231, 1383, 1490
DriI GACNNNNNGTC 1 cut(s) 557
Eam1105I GACNNNNNGTC 1 cut(s) 557
Eco130I CCWWGG 3 cut(s) 562, 664, 1392
Eco24I GRGCYC 2 cut(s) 255, 1360
Eco31I GGTCTC 1 cut(s) 1486
Eco47I GGWCC 3 cut(s) 182, 536, 1429
Eco57I CTGAAG 2 cut(s) 240, 924
EcoO109I RGGNCCY 3 cut(s) 182, 1145, 1429
EcoRII CCWGG 2 cut(s) 177, 612
EcoT14I CCWWGG 3 cut(s) 562, 664, 1392
EcoT22I ATGCAT 1 cut(s) 1290
EcoT38I GRGCYC 2 cut(s) 255, 1360
ErhI CCWWGG 3 cut(s) 562, 664, 1392
FaeI CATG 8 cut(s) 421, 758, 880, 961, 1096, 1292, 1312, 1466
FalI AAGNNNNNCTT 2 cut(s) 1038, 1070
FaqI GGGAC 5 cut(s) 122, 195, 328, 495, 754
FatI CATG 8 cut(s) 417, 754, 876, 957, 1092, 1288, 1308, 1462
FauI CCCGC 2 cut(s) 27, 577
FbaI TGATCA 1 cut(s) 1081
Fnu4HI GCNGC 4 cut(s) 125, 291, 1012, 1031
FokI GGATG 3 cut(s) 629, 950, 998
FriOI GRGCYC 2 cut(s) 255, 1360
Fsp4HI GCNGC 4 cut(s) 125, 291, 1012, 1031
FspBI CTAG 6 cut(s) 215, 461, 695, 1142, 1293, 1557
GlaI GCGC 4 cut(s) 289, 1091, 1335, 1550
GluI GCNGC 4 cut(s) 125, 291, 1012, 1031
GsaI CCCAGC 1 cut(s) 1029
HaeIII GGCC 2 cut(s) 1146, 1181
HgaI GACGC 1 cut(s) 1096
HhaI GCGC 4 cut(s) 290, 1092, 1336, 1551
Hin1II CATG 8 cut(s) 421, 758, 880, 961, 1096, 1292, 1312, 1466
Hin6I GCGC 4 cut(s) 288, 1090, 1334, 1549
HinP1I GCGC 4 cut(s) 288, 1090, 1334, 1549
HinfI GANTC 8 cut(s) 209, 377, 767, 809, 1123, 1259, 1268, 1276
HphI GGTGA 4 cut(s) 292, 335, 1118, 1148
Hpy166II GTNNAC 3 cut(s) 610, 1405, 1415
Hpy188III TCNNGA 7 cut(s) 29, 80, 244, 256, 855, 925, 1427
Hpy8I GTNNAC 3 cut(s) 610, 1405, 1415
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 6 cut(s) 99, 253, 467, 910, 1072, 1210
HpyCH4III ACNGT 3 cut(s) 452, 829, 1501
HpyCH4V TGCA 8 cut(s) 383, 472, 605, 932, 957, 1288, 1462, 1526
HpyF10VI GCNNNNNNNGC 5 cut(s) 290, 732, 938, 1397, 1557
HpyF3I CTNAG 7 cut(s) 195, 254, 343, 870, 1231, 1383, 1490
Hsp92II CATG 8 cut(s) 421, 758, 880, 961, 1096, 1292, 1312, 1466
HspAI GCGC 4 cut(s) 288, 1090, 1334, 1549
Ksp22I TGATCA 1 cut(s) 1081
LmnI GCTCC 2 cut(s) 1363, 1466
Lsp1109I GCAGC 3 cut(s) 111, 302, 1023
LweI GCATC 3 cut(s) 121, 153, 1513
MaeI CTAG 6 cut(s) 215, 461, 695, 1142, 1293, 1557
MaeIII GTNAC 4 cut(s) 77, 685, 713, 838
MboII GAAGA 6 cut(s) 73, 792, 818, 1046, 1087, 1225
MflI RGATCY 3 cut(s) 263, 1005, 1453
MhlI GDGCHC 4 cut(s) 255, 1224, 1360, 1486
MluCI AATT 9 cut(s) 394, 510, 588, 592, 759, 846, 1254, 1318, 1561
MlyI GAGTC 3 cut(s) 776, 1117, 1268
MmeI TCCRAC 1 cut(s) 456
Mph1103I ATGCAT 1 cut(s) 1290
MroXI GAANNNNTTC 2 cut(s) 592, 920
MseI TTAA 5 cut(s) 12, 276, 591, 1208, 1379
MslI CAYNNNNRTG 2 cut(s) 615, 638
MspA1I CMGCKG 5 cut(s) 22, 293, 795, 1133, 1166
MspR9I CCNGG 2 cut(s) 179, 614
Mva1269I GAATGC 1 cut(s) 980
MvaI CCWGG 2 cut(s) 179, 614
MvnI CGCG 3 cut(s) 288, 1090, 1336
MwoI GCNNNNNNNGC 5 cut(s) 290, 732, 938, 1397, 1557
NlaIII CATG 8 cut(s) 421, 758, 880, 961, 1096, 1292, 1312, 1466
NlaIV GGNNCC 6 cut(s) 175, 183, 265, 537, 1359, 1468
NmuCI GTSAC 3 cut(s) 77, 685, 713
NsiI ATGCAT 1 cut(s) 1290
NspI RCATGY 3 cut(s) 880, 1096, 1292
OliI CACNNNNGTG 1 cut(s) 638
PaeI GCATGC 2 cut(s) 880, 1292
PasI CCCWGGG 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 980
PdmI GAANNNNTTC 2 cut(s) 592, 920
PfeI GAWTC 5 cut(s) 209, 377, 809, 1268, 1276
PflMI CCANNNNNTGG 1 cut(s) 1463
PkrI GCNGC 4 cut(s) 126, 292, 1013, 1032
Ple19I CGATCG 1 cut(s) 1121
PleI GAGTC 3 cut(s) 775, 1117, 1267
PpsI GAGTC 3 cut(s) 775, 1117, 1267
PpuMI RGGWCCY 2 cut(s) 182, 1429
PshBI ATTAAT 1 cut(s) 591
PsiI TTATAA 1 cut(s) 819
Psp5II RGGWCCY 2 cut(s) 182, 1429
Psp6I CCWGG 2 cut(s) 177, 612
PspFI CCCAGC 1 cut(s) 1025
PspGI CCWGG 2 cut(s) 177, 612
PspN4I GGNNCC 6 cut(s) 175, 183, 265, 537, 1359, 1468
PspPI GGNCC 5 cut(s) 182, 536, 1145, 1180, 1429
PspPPI RGGWCCY 2 cut(s) 182, 1429
PstNI CAGNNNCTG 1 cut(s) 1517
PsuI RGATCY 3 cut(s) 263, 1005, 1453
PvuI CGATCG 1 cut(s) 1121
PvuII CAGCTG 3 cut(s) 293, 1133, 1166
RsaI GTAC 1 cut(s) 1414
RsaNI GTAC 1 cut(s) 1413
RseI CAYNNNNRTG 2 cut(s) 615, 638
SaqAI TTAA 5 cut(s) 12, 276, 591, 1208, 1379
SatI GCNGC 4 cut(s) 125, 291, 1012, 1031
Sau96I GGNCC 5 cut(s) 182, 536, 1145, 1180, 1429
SchI GAGTC 3 cut(s) 776, 1117, 1268
ScrFI CCNGG 2 cut(s) 179, 614
SduI GDGCHC 4 cut(s) 255, 1224, 1360, 1486
SfaNI GCATC 3 cut(s) 121, 153, 1513
SinI GGWCC 3 cut(s) 182, 536, 1429
SmiMI CAYNNNNRTG 2 cut(s) 615, 638
SmlI CTYRAG 2 cut(s) 189, 202
SmoI CTYRAG 2 cut(s) 189, 202
SphI GCATGC 2 cut(s) 880, 1292
Sse9I AATT 9 cut(s) 394, 510, 588, 592, 759, 846, 1254, 1318, 1561
SsiI CCGC 6 cut(s) 20, 584, 795, 1009, 1030, 1336
SspI AATATT 2 cut(s) 235, 408
SspMI CTAG 6 cut(s) 215, 461, 695, 1142, 1293, 1557
StyD4I CCNGG 2 cut(s) 177, 612
StyI CCWWGG 3 cut(s) 562, 664, 1392
TaaI ACNGT 3 cut(s) 452, 829, 1501
TaqI TCGA 4 cut(s) 36, 230, 924, 1121
TasI AATT 9 cut(s) 394, 510, 588, 592, 759, 846, 1254, 1318, 1561
TauI GCSGC 1 cut(s) 1033
TfiI GAWTC 5 cut(s) 209, 377, 809, 1268, 1276
Tru1I TTAA 5 cut(s) 12, 276, 591, 1208, 1379
Tru9I TTAA 5 cut(s) 12, 276, 591, 1208, 1379
TscAI CASTG 4 cut(s) 511, 1006, 1464, 1518
TseFI GTSAC 3 cut(s) 77, 685, 713
TseI GCWGC 3 cut(s) 124, 290, 1011
Tsp45I GTSAC 3 cut(s) 77, 685, 713
TspDTI ATGAA 7 cut(s) 261, 294, 434, 743, 987, 1260, 1297
TspGWI ACGGA 1 cut(s) 528
TspRI CASTG 4 cut(s) 511, 1006, 1464, 1518
Van91I CCANNNNNTGG 1 cut(s) 1463
VpaK11BI GGWCC 3 cut(s) 182, 536, 1429
VspI ATTAAT 1 cut(s) 591
XceI RCATGY 3 cut(s) 880, 1096, 1292
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmnI GAANNNNTTC 2 cut(s) 592, 920
XspI CTAG 6 cut(s) 215, 461, 695, 1142, 1293, 1557
Zsp2I ATGCAT 1 cut(s) 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.