Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017806

Physical Location & Seq

Genomic Coordinates Reverse (-)

50039963 .. 50041324

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATTCAAGCTCGACTGATCCCCTTGATGAAGCATTCATCTGCAGGAGGCTGTATTGTTAGTATGAGCTCAAGATTGGGAAGACTAAATGGCAAACAAAATGAAGAGCACATTGAAATTGCCAAAGCCAAGAAAAAAGCAGGAGAAACAGAGTTGCGCTCATCCGAGGAACAACTTCATGCTACGAAAAATCTTAGACAGATCAAACAACTTGAAAACACACGTGGACGCATTATTGCTAATGTTGCTGTACAAGCCAAGATTCAAGAATCAGTGGTTCAAATAAACAAAGAGGTCTTTCAACACCAGGAAACCATGGTTGACCCGAAGAAGTGTTTGTGTTTGCCGTGCCAGAATATCCCAATTGAAATCGGAGAAGCTTATCGAGGAATTGCATTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

134

Amino Acids

14.96

Weight (kDa)

9.33

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017806)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420181
rosa_roxburghii	Rroxscaffold_2G00118540 Rroxscaffold_2G00118850 Rroxscaffold_4G00287940
rosa_samantha	Rh1AG154700 Rh1BG124000 Rh2AG285900 Rh2BG240000 Rh2BG297500 Rh2CG275300 Rh2DG311400
rosa_wichuraiana	Rw0G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	13
AcvI	CACGTG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	252
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	7 cut(s)	8, 116, 215, 266, 281, 302, 368
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	11, 69, 380
AluI	AGCT	3 cut(s)	11, 69, 380
Alw21I	GWGCWC	2 cut(s)	71, 111
AlwI	GGATC	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	71
BbrPI	CACGTG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	2 cut(s)	71, 111
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuEI	CTTGAG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	165, 315
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	165, 315
BseGI	GGATG	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	71, 111
BsmI	GAATGC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	71, 111
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	18, 201
Bsp19I	CCATGG	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	165, 315
BssMI	GATC	2 cut(s)	18, 201
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	99
BstAUI	TGTACA	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	2 cut(s)	21, 204
BstMBI	GATC	2 cut(s)	18, 201
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 254
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	279
CfoI	GCGC	1 cut(s)	159
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	2 cut(s)	179, 316
CviJI	RGCY	6 cut(s)	11, 51, 69, 128, 257, 380
CviKI_1	RGCY	6 cut(s)	11, 51, 69, 128, 257, 380
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	20, 203
DpnII	GATC	2 cut(s)	18, 201
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	69
Eco72I	CACGTG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	182, 319
FaiI	YATR	3 cut(s)	65, 180, 317
FatI	CATG	2 cut(s)	178, 315
FokI	GGATG	1 cut(s)	148
FriOI	GRGCYC	1 cut(s)	71
GlaI	GCGC	1 cut(s)	158
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	182, 319
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	3 cut(s)	4, 262, 269
Hpy166II	GTNNAC	2 cut(s)	227, 322
Hpy188I	TCNGA	2 cut(s)	166, 374
Hpy188III	TCNNGA	2 cut(s)	72, 266
Hpy8I	GTNNAC	2 cut(s)	227, 322
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	44, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 254
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	182, 319
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	18, 201
LguI	GCTCTTC	1 cut(s)	99
LpnPI	CCDG	5 cut(s)	30, 126, 293, 320, 365
MaeII	ACGT	1 cut(s)	223
MalI	GATC	2 cut(s)	20, 203
MboI	GATC	2 cut(s)	18, 201
MboII	GAAGA	3 cut(s)	93, 116, 340
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	2 cut(s)	71, 111
MluCI	AATT	3 cut(s)	117, 363, 390
MnlI	CCTC	4 cut(s)	41, 160, 286, 380
MroXI	GAANNNNTTC	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	245, 254
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	2 cut(s)	18, 201
NlaIII	CATG	2 cut(s)	182, 319
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	4, 262, 269
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	306
PspCI	CACGTG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	18, 201
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	71, 111
SetI	ASST	5 cut(s)	13, 71, 226, 297, 382
SfcI	CTRYAG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	3 cut(s)	117, 363, 390
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	315
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	13, 385
TasI	AATT	3 cut(s)	117, 363, 390
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	3 cut(s)	4, 262, 269
TscAI	CASTG	1 cut(s)	279
TspDTI	ATGAA	4 cut(s)	27, 44, 117, 167
TspRI	CASTG	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.