Proton pump-interactor
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0420181 |
| rosa_roxburghii | Rroxscaffold_2G00118540 Rroxscaffold_2G00118850 Rroxscaffold_4G00287940 |
| rosa_samantha | Rh1AG154700 Rh1BG124000 Rh2AG285900 Rh2BG240000 Rh2BG297500 Rh2CG275300 Rh2DG311400 |
| rosa_wichuraiana | Rw0G009690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 261, 280 |
| AciI | CCGC | 1 cut(s) | 242 |
| AcuI | CTGAAG | 1 cut(s) | 202 |
| AcvI | CACGTG | 1 cut(s) | 488 |
| AfaI | GTAC | 1 cut(s) | 516 |
| AflIII | ACRYGT | 1 cut(s) | 485 |
| AjnI | CCWGG | 1 cut(s) | 570 |
| AluBI | AGCT | 4 cut(s) | 170, 205, 216, 644 |
| AluI | AGCT | 4 cut(s) | 170, 205, 216, 644 |
| Alw21I | GWGCWC | 2 cut(s) | 207, 375 |
| Alw26I | GTCTC | 2 cut(s) | 49, 321 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 314, 346 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 226, 438 |
| AspLEI | GCGC | 1 cut(s) | 423 |
| BanII | GRGCYC | 1 cut(s) | 207 |
| BbrPI | CACGTG | 1 cut(s) | 488 |
| Bbv12I | GWGCWC | 2 cut(s) | 207, 375 |
| BccI | CCATC | 1 cut(s) | 119 |
| BceAI | ACGGC | 1 cut(s) | 595 |
| BciT130I | CCWGG | 1 cut(s) | 572 |
| BcoDI | GTCTC | 2 cut(s) | 49, 321 |
| BfaI | CTAG | 2 cut(s) | 33, 269 |
| BfmI | CTRYAG | 1 cut(s) | 287 |
| BfuAI | ACCTGC | 2 cut(s) | 261, 280 |
| BisI | GCNGC | 1 cut(s) | 243 |
| BlsI | GCNGC | 1 cut(s) | 244 |
| Bme1390I | CCNGG | 1 cut(s) | 572 |
| BmrFI | CCNGG | 1 cut(s) | 572 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 407, 439 |
| BsaAI | YACGTR | 1 cut(s) | 488 |
| BsaI | GGTCTC | 1 cut(s) | 49 |
| BsaJI | CCNNGG | 2 cut(s) | 429, 579 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 120, 150, 318, 348 |
| BseBI | CCWGG | 1 cut(s) | 572 |
| BseDI | CCNNGG | 2 cut(s) | 429, 579 |
| BseGI | GGATG | 2 cut(s) | 165, 425 |
| BsiHKAI | GWGCWC | 2 cut(s) | 207, 375 |
| BsiSI | CCGG | 1 cut(s) | 343 |
| BsmAI | GTCTC | 2 cut(s) | 49, 321 |
| Bso31I | GGTCTC | 1 cut(s) | 49 |
| Bsp1286I | GDGCHC | 2 cut(s) | 207, 375 |
| Bsp1407I | TGTACA | 1 cut(s) | 514 |
| Bsp143I | GATC | 1 cut(s) | 465 |
| Bsp19I | CCATGG | 1 cut(s) | 579 |
| BspACI | CCGC | 1 cut(s) | 242 |
| BspMAI | CTGCAG | 1 cut(s) | 291 |
| BspMI | ACCTGC | 2 cut(s) | 261, 280 |
| BspQI | GCTCTTC | 2 cut(s) | 212, 363 |
| BspTNI | GGTCTC | 1 cut(s) | 49 |
| BsrGI | TGTACA | 1 cut(s) | 514 |
| BssECI | CCNNGG | 2 cut(s) | 429, 579 |
| BssMI | GATC | 1 cut(s) | 465 |
| BssT1I | CCWWGG | 1 cut(s) | 579 |
| Bst2UI | CCWGG | 1 cut(s) | 572 |
| Bst6I | CTCTTC | 2 cut(s) | 212, 363 |
| BstAUI | TGTACA | 1 cut(s) | 514 |
| BstBAI | YACGTR | 1 cut(s) | 488 |
| BstDEI | CTNAG | 2 cut(s) | 260, 458 |
| BstDSI | CCRYGG | 1 cut(s) | 579 |
| BstF5I | GGATG | 2 cut(s) | 165, 425 |
| BstHHI | GCGC | 1 cut(s) | 423 |
| BstKTI | GATC | 1 cut(s) | 468 |
| BstMAI | GTCTC | 2 cut(s) | 49, 321 |
| BstMBI | GATC | 1 cut(s) | 465 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 509, 518 |
| BstNI | CCWGG | 1 cut(s) | 572 |
| BstSCI | CCNGG | 1 cut(s) | 570 |
| BstSFI | CTRYAG | 1 cut(s) | 287 |
| BtgI | CCRYGG | 1 cut(s) | 579 |
| BtsCI | GGATG | 2 cut(s) | 165, 425 |
| BtsIMutI | CAGTG | 1 cut(s) | 543 |
| BveI | ACCTGC | 2 cut(s) | 261, 280 |
| CfoI | GCGC | 1 cut(s) | 423 |
| CseI | GACGC | 1 cut(s) | 501 |
| Csp6I | GTAC | 1 cut(s) | 515 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 48, 83 |
| CviAII | CATG | 4 cut(s) | 62, 115, 443, 580 |
| CviQI | GTAC | 1 cut(s) | 515 |
| DdeI | CTNAG | 2 cut(s) | 260, 458 |
| DpnI | GATC | 1 cut(s) | 467 |
| DpnII | GATC | 1 cut(s) | 465 |
| Eam1104I | CTCTTC | 2 cut(s) | 212, 363 |
| EarI | CTCTTC | 2 cut(s) | 212, 363 |
| Ecl136II | GAGCTC | 1 cut(s) | 205 |
| Eco130I | CCWWGG | 1 cut(s) | 579 |
| Eco24I | GRGCYC | 1 cut(s) | 207 |
| Eco31I | GGTCTC | 1 cut(s) | 49 |
| Eco53kI | GAGCTC | 1 cut(s) | 205 |
| Eco57I | CTGAAG | 1 cut(s) | 202 |
| Eco72I | CACGTG | 1 cut(s) | 488 |
| EcoICRI | GAGCTC | 1 cut(s) | 205 |
| EcoRII | CCWGG | 1 cut(s) | 570 |
| EcoT14I | CCWWGG | 1 cut(s) | 579 |
| EcoT38I | GRGCYC | 1 cut(s) | 207 |
| ErhI | CCWWGG | 1 cut(s) | 579 |
| FaeI | CATG | 4 cut(s) | 65, 118, 446, 583 |
| FaiI | YATR | 7 cut(s) | 63, 91, 116, 167, 308, 444, 581 |
| FatI | CATG | 4 cut(s) | 61, 114, 442, 579 |
| Fnu4HI | GCNGC | 1 cut(s) | 243 |
| FokI | GGATG | 2 cut(s) | 172, 412 |
| FriOI | GRGCYC | 1 cut(s) | 207 |
| Fsp4HI | GCNGC | 1 cut(s) | 243 |
| FspBI | CTAG | 2 cut(s) | 33, 269 |
| GlaI | GCGC | 1 cut(s) | 422 |
| GluI | GCNGC | 1 cut(s) | 243 |
| HapII | CCGG | 1 cut(s) | 343 |
| HgaI | GACGC | 1 cut(s) | 501 |
| HhaI | GCGC | 1 cut(s) | 423 |
| Hin1II | CATG | 4 cut(s) | 65, 118, 446, 583 |
| Hin6I | GCGC | 1 cut(s) | 421 |
| HinP1I | GCGC | 1 cut(s) | 421 |
| HincII | GTYRAC | 1 cut(s) | 586 |
| HindII | GTYRAC | 1 cut(s) | 586 |
| HindIII | AAGCTT | 1 cut(s) | 642 |
| HinfI | GANTC | 5 cut(s) | 19, 265, 526, 533, 587 |
| HpaII | CCGG | 1 cut(s) | 343 |
| Hpy166II | GTNNAC | 2 cut(s) | 491, 586 |
| Hpy188I | TCNGA | 4 cut(s) | 106, 221, 430, 638 |
| Hpy188III | TCNNGA | 2 cut(s) | 23, 530 |
| Hpy8I | GTNNAC | 2 cut(s) | 491, 586 |
| HpyAV | CCTTC | 2 cut(s) | 38, 216 |
| HpyCH4IV | ACGT | 2 cut(s) | 315, 487 |
| HpyCH4V | TGCA | 5 cut(s) | 114, 165, 256, 289, 659 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 509, 518 |
| HpyF3I | CTNAG | 2 cut(s) | 260, 458 |
| HpySE526I | ACGT | 2 cut(s) | 315, 487 |
| Hsp92II | CATG | 4 cut(s) | 65, 118, 446, 583 |
| HspAI | GCGC | 1 cut(s) | 421 |
| Kzo9I | GATC | 1 cut(s) | 465 |
| LguI | GCTCTTC | 2 cut(s) | 212, 363 |
| LpnPI | CCDG | 8 cut(s) | 231, 266, 275, 356, 390, 557, 584, 629 |
| LweI | GCATC | 1 cut(s) | 265 |
| MaeI | CTAG | 2 cut(s) | 33, 269 |
| MaeII | ACGT | 2 cut(s) | 315, 487 |
| MalI | GATC | 1 cut(s) | 467 |
| MboI | GATC | 1 cut(s) | 465 |
| MboII | GAAGA | 7 cut(s) | 82, 94, 194, 197, 199, 380, 604 |
| MfeI | CAATTG | 1 cut(s) | 627 |
| MhlI | GDGCHC | 2 cut(s) | 207, 375 |
| MluCI | AATT | 4 cut(s) | 232, 381, 627, 654 |
| MlyI | GAGTC | 1 cut(s) | 581 |
| MnlI | CCTC | 5 cut(s) | 22, 141, 424, 550, 644 |
| MroXI | GAANNNNTTC | 2 cut(s) | 226, 438 |
| MseI | TTAA | 1 cut(s) | 99 |
| MspI | CCGG | 1 cut(s) | 343 |
| MspR9I | CCNGG | 1 cut(s) | 572 |
| MunI | CAATTG | 1 cut(s) | 627 |
| MvaI | CCWGG | 1 cut(s) | 572 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 509, 518 |
| NcoI | CCATGG | 1 cut(s) | 579 |
| NdeII | GATC | 1 cut(s) | 465 |
| NlaIII | CATG | 4 cut(s) | 65, 118, 446, 583 |
| PciSI | GCTCTTC | 2 cut(s) | 212, 363 |
| PdmI | GAANNNNTTC | 2 cut(s) | 226, 438 |
| PfeI | GAWTC | 4 cut(s) | 19, 265, 526, 533 |
| PkrI | GCNGC | 1 cut(s) | 244 |
| PleI | GAGTC | 1 cut(s) | 581 |
| PmaCI | CACGTG | 1 cut(s) | 488 |
| PmlI | CACGTG | 1 cut(s) | 488 |
| PpsI | GAGTC | 1 cut(s) | 581 |
| Ppu21I | YACGTR | 1 cut(s) | 488 |
| Psp124BI | GAGCTC | 1 cut(s) | 207 |
| Psp6I | CCWGG | 1 cut(s) | 570 |
| PspCI | CACGTG | 1 cut(s) | 488 |
| PspGI | CCWGG | 1 cut(s) | 570 |
| PstI | CTGCAG | 1 cut(s) | 291 |
| RsaI | GTAC | 1 cut(s) | 516 |
| RsaNI | GTAC | 1 cut(s) | 515 |
| SacI | GAGCTC | 1 cut(s) | 207 |
| SapI | GCTCTTC | 2 cut(s) | 212, 363 |
| SaqAI | TTAA | 1 cut(s) | 99 |
| SatI | GCNGC | 1 cut(s) | 243 |
| Sau3AI | GATC | 1 cut(s) | 465 |
| SchI | GAGTC | 1 cut(s) | 581 |
| ScrFI | CCNGG | 1 cut(s) | 572 |
| SduI | GDGCHC | 2 cut(s) | 207, 375 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SfcI | CTRYAG | 1 cut(s) | 287 |
| Sse9I | AATT | 4 cut(s) | 232, 381, 627, 654 |
| SsiI | CCGC | 1 cut(s) | 242 |
| SspMI | CTAG | 2 cut(s) | 33, 269 |
| SstI | GAGCTC | 1 cut(s) | 207 |
| StyD4I | CCNGG | 1 cut(s) | 570 |
| StyI | CCWWGG | 1 cut(s) | 579 |
| TaiI | ACGT | 2 cut(s) | 318, 490 |
| TaqI | TCGA | 2 cut(s) | 590, 649 |
| TasI | AATT | 4 cut(s) | 232, 381, 627, 654 |
| TatI | WGTACW | 1 cut(s) | 514 |
| TauI | GCSGC | 1 cut(s) | 245 |
| TfiI | GAWTC | 4 cut(s) | 19, 265, 526, 533 |
| Tru1I | TTAA | 1 cut(s) | 99 |
| Tru9I | TTAA | 1 cut(s) | 99 |
| TscAI | CASTG | 1 cut(s) | 543 |
| TspDTI | ATGAA | 3 cut(s) | 17, 204, 431 |
| TspGWI | ACGGA | 1 cut(s) | 339 |
| TspRI | CASTG | 1 cut(s) | 543 |
| XmnI | GAANNNNTTC | 2 cut(s) | 226, 438 |
| XspI | CTAG | 2 cut(s) | 33, 269 |