Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017806

Physical Location & Seq

Genomic Coordinates Forward (+)

23946910 .. 23950086

Gene Structure 3177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATTCAAGCTCCGATCCCCTTGATGAAGTATTCATCTGCAGGAGGCCGTATTGTTAGTATGAGCTCAAGATTGGGAAGACTAAATGGCAAACAAAATGAAGAGCACATTGAAATTGCCAAAGCCAAGAAAAAAGCAGGAGAAACAGATTTTTGCTCAACTGAGGAACAGCTTCGTGCTACAAAAAACCTAAGACAGATCAAACAACTTGAAAACACACGTGGACACATTATTGCTATTGTTGCTGTACAAGCCAAGATTCAAGAATCAGTGGTTCAAATAAACAAAGAGGTCTTTCAACACCAAGTTAAAACAACAGAACAGCTGAAGAATCTCTTTACTCACATGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

117

Amino Acids

13.23

Weight (kDa)

9.81

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017806)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420181
rosa_roxburghii	Rroxscaffold_2G00118540 Rroxscaffold_2G00118850 Rroxscaffold_4G00287940
rosa_samantha	Rh1AG154700 Rh1BG124000 Rh2AG285900 Rh2BG240000 Rh2BG297500 Rh2CG275300 Rh2DG311400
rosa_wichuraiana	Rw0G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	347
AcvI	CACGTG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	249
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	6 cut(s)	8, 113, 212, 263, 278, 299
AluBI	AGCT	4 cut(s)	11, 66, 172, 325
AluI	AGCT	4 cut(s)	11, 66, 172, 325
Alw21I	GWGCWC	2 cut(s)	68, 108
AlwI	GGATC	1 cut(s)	10
AoxI	GGCC	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	68
BbrPI	CACGTG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	2 cut(s)	68, 108
BceAI	ACGGC	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	2 cut(s)	68, 108
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	68, 108
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	15, 198
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	10
BspQI	GCTCTTC	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	247
BssMI	GATC	2 cut(s)	15, 198
Bst6I	CTCTTC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	247
BstBAI	YACGTR	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	162, 191
BstKTI	GATC	2 cut(s)	18, 201
BstMBI	GATC	2 cut(s)	15, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 251
BstSFI	CTRYAG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	7 cut(s)	11, 48, 66, 125, 172, 254, 325
CviKI_1	RGCY	7 cut(s)	11, 48, 66, 125, 172, 254, 325
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	2 cut(s)	162, 191
DpnI	GATC	2 cut(s)	17, 200
DpnII	GATC	2 cut(s)	15, 198
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	347
Eco72I	CACGTG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	1 cut(s)	349
FaiI	YATR	2 cut(s)	62, 347
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	349
HinfI	GANTC	4 cut(s)	4, 259, 266, 331
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	69, 263
Hpy8I	GTNNAC	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 251
HpyF3I	CTNAG	2 cut(s)	162, 191
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	15, 198
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	2 cut(s)	27, 123
MaeII	ACGT	1 cut(s)	220
MalI	GATC	2 cut(s)	17, 200
MboI	GATC	2 cut(s)	15, 198
MboII	GAAGA	3 cut(s)	90, 113, 340
MhlI	GDGCHC	2 cut(s)	68, 108
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	3 cut(s)	38, 157, 283
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	2 cut(s)	309, 352
MspA1I	CMGCKG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	242, 251
NdeII	GATC	2 cut(s)	15, 198
NlaIII	CATG	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	4 cut(s)	4, 259, 266, 331
PmaCI	CACGTG	1 cut(s)	221
PmlI	CACGTG	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	68
PspCI	CACGTG	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	309, 352
Sau3AI	GATC	2 cut(s)	15, 198
SduI	GDGCHC	2 cut(s)	68, 108
SetI	ASST	7 cut(s)	13, 68, 174, 192, 223, 294, 327
SfcI	CTRYAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	68
TaiI	ACGT	1 cut(s)	223
TasI	AATT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	4 cut(s)	4, 259, 266, 331
Tru1I	TTAA	2 cut(s)	309, 352
Tru9I	TTAA	2 cut(s)	309, 352
TscAI	CASTG	1 cut(s)	276
TspDTI	ATGAA	3 cut(s)	24, 41, 114
TspRI	CASTG	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.