Rh1AG154700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017806
Physical Location & Seq
Reverse (-)
28894073 .. 28896320
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG154700.1

Sequence Viewer

Length: 249 bp
ATGAACCTGTGCCTCCATTGCCCATGCCGCCAATTGAGAGTGCCGGCGAAGGTGAGCGATTGTTGTGGTGGTCTCCTCGAGCTCGACGAAGTCGTCGGTGGTGATCCAGGACACCTCGGTCACTGTAGAACCCTCAGAATCGACGACGACGAACCATCGCCTCATCGAACCGTCTATTTGACCAGGACGAGGTCATTGTTGAGTGCTACAAGTACGGCTCCTACTCGAACTTGTGTGGCGGGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.89

Weight (kDa)

6.87

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 92, 117
AciI CCGC 2 cut(s) 28, 239
AclWI GGATC 1 cut(s) 98
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 189
AjnI CCWGG 2 cut(s) 106, 182
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 64, 113
AvaI CYCGRG 1 cut(s) 77
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 2 cut(s) 108, 184
BcoDI GTCTC 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 108, 184
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 2 cut(s) 108, 184
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 2 cut(s) 108, 184
BseDI CCNNGG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 28, 239
BspCNI CTCAG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 108, 184
Bst4CI ACNGT 2 cut(s) 125, 172
BstC8I GCNNGC 2 cut(s) 45, 241
BstDEI CTNAG 1 cut(s) 134
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 18, 27
BstNI CCWGG 2 cut(s) 108, 184
BstSCI CCNGG 2 cut(s) 106, 182
BstSFI CTRYAG 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 45, 241
Cfr10I RCCGGY 1 cut(s) 43
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 24
CviJI RGCY 3 cut(s) 82, 218, 243
CviKI_1 RGCY 3 cut(s) 82, 218, 243
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DrdI GACNNNNNNGTC 2 cut(s) 92, 117
DseDI GACNNNNNNGTC 2 cut(s) 92, 117
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 106, 182
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 1 cut(s) 27
FaiI YATR 1 cut(s) 25
FatI CATG 1 cut(s) 23
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 28
HapII CCGG 1 cut(s) 44
Hin1II CATG 1 cut(s) 27
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 64, 113
Hpy188I TCNGA 2 cut(s) 137, 248
Hpy99I CGWCG 5 cut(s) 89, 98, 146, 149, 152
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 125, 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 27
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 27
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 6 cut(s) 20, 57, 93, 120, 169, 196
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 32
MnlI CCTC 6 cut(s) 23, 86, 125, 143, 171, 183
MroNI GCCGGC 1 cut(s) 43
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 108, 184
MunI CAATTG 1 cut(s) 32
MvaI CCWGG 2 cut(s) 108, 184
MwoI GCNNNNNNNGC 2 cut(s) 18, 27
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 27
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 90, 147
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 138
PflFI GACNNNGTC 2 cut(s) 89, 190
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 106, 182
PspGI CCWGG 2 cut(s) 106, 182
PspN4I GGNNCC 1 cut(s) 219
PspXI VCTCGAGB 1 cut(s) 77
PsyI GACNNNGTC 2 cut(s) 89, 190
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SacI GAGCTC 1 cut(s) 84
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 108, 184
SduI GDGCHC 1 cut(s) 84
SetI ASST 5 cut(s) 9, 54, 84, 117, 194
SfcI CTRYAG 1 cut(s) 124
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 32
SsiI CCGC 2 cut(s) 28, 239
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 106, 182
TaaI ACNGT 2 cut(s) 125, 172
TaqI TCGA 5 cut(s) 78, 84, 141, 166, 226
TaqII GACCGA 1 cut(s) 107
TasI AATT 1 cut(s) 32
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 138
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 128
Tth111I GACNNNGTC 2 cut(s) 89, 190
XhoI CTCGAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.