Rh1BG124000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017806
Physical Location & Seq
Reverse (-)
20911136 .. 20913080
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG124000.1

Sequence Viewer

Length: 642 bp
ATGCACCTAGTCAATTATAATTCCATCAGATCCAGATCCAAATTAGAATCTCTGAATTCATTTAAAACCTTATGCAAGAAGCCAAGAAAACGAACCTCATTTTCTTCTTTAAGATTGAGAGTGCCGGCGAAGGTGAGCGATTGTTGTGGTGGTCTCCTCGAGCTTGACGAAGTCGTCGGTGGTGATCCAGGACACCTCGGTCACCGTAGAACCCTCAGAATCGACGGCGACGAACCATCGCCTCATCGAACCGTCTATTTGACCAGGACGAGGTCATTGTTGAGTGCTACGAGTATGGCTCCTACTCGAACTTGTGCAGCGGGCTTCCGAAGTCTTTGTGGGTTAACGAGTGAGGGAGGCCGTATTGTTAGTATGAGCTCAAGATTGGGAAGACTAAATGGCAAACAAAATGAAGAGCACATTGAAATTGCCAAAGCCAAGAAAAAAGCAGGAGAAACAGAGTTTTGCTCAACTGAGGAACAGCTTCATGCTGCAATCAAAAGCTTGCAGTATATCATACAACAAGAATGCATTCTGTTTAGAAAAACCGTAGACAAATCAAACAACTTGAAAACACACGTGGACACATTATTGCTATTGTTGCTGTACAAGCCAAGATTCAAGAATCAGTGGTTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.02

Weight (kDa)

9.89

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
AasI GACNNNNNNGTC 2 cut(s) 173, 198
AccI GTMKAC 1 cut(s) 552
AciI CCGC 1 cut(s) 320
AclWI GGATC 3 cut(s) 24, 30, 179
AcsI RAATTY 1 cut(s) 55
AcvI CACGTG 1 cut(s) 580
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 4 cut(s) 425, 571, 622, 637
AjnI CCWGG 2 cut(s) 187, 263
AluBI AGCT 4 cut(s) 163, 378, 484, 504
AluI AGCT 4 cut(s) 163, 378, 484, 504
Alw21I GWGCWC 2 cut(s) 380, 420
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 3 cut(s) 24, 30, 179
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 317, 491
ApoI RAATTY 1 cut(s) 55
Asp700I GAANNNNTTC 2 cut(s) 483, 531
AsuHPI GGTGA 3 cut(s) 145, 194, 194
AvaI CYCGRG 1 cut(s) 158
BanII GRGCYC 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 397
Bbv12I GWGCWC 2 cut(s) 380, 420
BbvI GCAGC 2 cut(s) 329, 478
BccI CCATC 2 cut(s) 32, 244
BceAI ACGGC 2 cut(s) 241, 345
BciT130I CCWGG 2 cut(s) 189, 265
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 8
BisI GCNGC 2 cut(s) 318, 492
BlsI GCNGC 2 cut(s) 319, 493
Bme1390I CCNGG 2 cut(s) 189, 265
BmeT110I CYCGRG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 2 cut(s) 189, 265
BpiI GAAGAC 1 cut(s) 397
BplI GAGNNNNNCTC 4 cut(s) 283, 315, 452, 484
BpuEI CTTGAG 1 cut(s) 364
BsaAI YACGTR 1 cut(s) 580
BsaBI GATNNNNATC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 34
BseBI CCWGG 2 cut(s) 189, 265
BseDI CCNNGG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 229, 465
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 329, 478
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 1 cut(s) 360
BsiHKAI GWGCWC 2 cut(s) 380, 420
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 158
BsmI GAATGC 2 cut(s) 531, 533
BsnI GGCC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 380, 420
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 3 cut(s) 29, 35, 184
BspACI CCGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 228, 466
BspLI GGNNCC 1 cut(s) 300
BspPI GGATC 3 cut(s) 24, 30, 179
BspQI GCTCTTC 1 cut(s) 408
BspTNI GGTCTC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 124
BsrGI TGTACA 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 3 cut(s) 29, 35, 184
Bst2UI CCWGG 2 cut(s) 189, 265
Bst4CI ACNGT 3 cut(s) 206, 253, 550
Bst6I CTCTTC 1 cut(s) 408
BstAUI TGTACA 1 cut(s) 606
BstBAI YACGTR 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 126, 322, 506
BstDEI CTNAG 2 cut(s) 215, 474
BstEII GGTNACC 1 cut(s) 200
BstKTI GATC 3 cut(s) 32, 38, 187
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 29, 35, 184
BstMWI GCNNNNNNNGC 2 cut(s) 601, 610
BstNI CCWGG 2 cut(s) 189, 265
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 187, 263
BstV1I GCAGC 2 cut(s) 329, 478
BstV2I GAAGAC 1 cut(s) 397
BstX2I RGATCY 2 cut(s) 29, 35
BstYI RGATCY 2 cut(s) 29, 35
BsuRI GGCC 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 635
Cac8I GCNNGC 3 cut(s) 126, 322, 506
Cfr10I RCCGGY 1 cut(s) 124
Csp6I GTAC 1 cut(s) 607
CviAII CATG 1 cut(s) 488
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 2 cut(s) 215, 474
DpnI GATC 3 cut(s) 31, 37, 186
DpnII GATC 3 cut(s) 29, 35, 184
DraI TTTAAA 1 cut(s) 64
DrdI GACNNNNNNGTC 2 cut(s) 173, 198
DseDI GACNNNNNNGTC 2 cut(s) 173, 198
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 378
Eco72I CACGTG 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 378
EcoO65I GGTNACC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 187, 263
EcoT22I ATGCAT 1 cut(s) 533
EcoT38I GRGCYC 1 cut(s) 380
FaeI CATG 1 cut(s) 491
FaiI YATR 7 cut(s) 18, 73, 296, 374, 489, 513, 518
FatI CATG 1 cut(s) 487
FauI CCCGC 1 cut(s) 313
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 2 cut(s) 318, 492
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 318, 492
FspBI CTAG 1 cut(s) 8
GluI GCNGC 2 cut(s) 318, 492
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 125
Hin1II CATG 1 cut(s) 491
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 4 cut(s) 47, 219, 618, 625
HpaI GTTAAC 1 cut(s) 345
HpaII CCGG 1 cut(s) 125
HphI GGTGA 3 cut(s) 145, 194, 194
Hpy166II GTNNAC 3 cut(s) 345, 553, 583
Hpy188I TCNGA 4 cut(s) 29, 54, 218, 329
Hpy188III TCNNGA 3 cut(s) 33, 381, 622
Hpy8I GTNNAC 3 cut(s) 345, 553, 583
Hpy99I CGWCG 3 cut(s) 179, 227, 233
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 206, 253, 550
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 6 cut(s) 4, 75, 317, 494, 508, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 601, 610
HpyF3I CTNAG 2 cut(s) 215, 474
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 1 cut(s) 491
KroI GCCGGC 1 cut(s) 124
KroNI GCCGGC 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 3 cut(s) 29, 35, 184
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 7 cut(s) 46, 138, 174, 201, 250, 277, 435
Lsp1109I GCAGC 2 cut(s) 329, 478
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 200
MalI GATC 3 cut(s) 31, 37, 186
MboI GATC 3 cut(s) 29, 35, 184
MboII GAAGA 3 cut(s) 96, 402, 425
MflI RGATCY 2 cut(s) 29, 35
MhlI GDGCHC 2 cut(s) 380, 420
MluCI AATT 5 cut(s) 13, 19, 41, 55, 426
MnlI CCTC 9 cut(s) 106, 167, 206, 224, 252, 264, 346, 350, 469
Mph1103I ATGCAT 1 cut(s) 533
MroNI GCCGGC 1 cut(s) 124
MroXI GAANNNNTTC 2 cut(s) 483, 531
MseI TTAA 3 cut(s) 63, 110, 344
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 189, 265
Mva1269I GAATGC 2 cut(s) 531, 533
MvaI CCWGG 2 cut(s) 189, 265
MwoI GCNNNNNNNGC 2 cut(s) 601, 610
NaeI GCCGGC 1 cut(s) 126
NdeII GATC 3 cut(s) 29, 35, 184
NgoMIV GCCGGC 1 cut(s) 124
NlaIII CATG 1 cut(s) 491
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 533
PaeR7I CTCGAG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 228
PctI GAATGC 2 cut(s) 531, 533
PdiI GCCGGC 1 cut(s) 126
PdmI GAANNNNTTC 2 cut(s) 483, 531
PfeI GAWTC 4 cut(s) 47, 219, 618, 625
PflFI GACNNNGTC 2 cut(s) 170, 271
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 2 cut(s) 319, 493
PmaCI CACGTG 1 cut(s) 580
PmlI CACGTG 1 cut(s) 580
Ppu21I YACGTR 1 cut(s) 580
PsiI TTATAA 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 187, 263
PspCI CACGTG 1 cut(s) 580
PspEI GGTNACC 1 cut(s) 200
PspGI CCWGG 2 cut(s) 187, 263
PspN4I GGNNCC 1 cut(s) 300
PspXI VCTCGAGB 1 cut(s) 158
PsuI RGATCY 2 cut(s) 29, 35
PsyI GACNNNGTC 2 cut(s) 170, 271
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
SacI GAGCTC 1 cut(s) 380
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 3 cut(s) 63, 110, 344
SatI GCNGC 2 cut(s) 318, 492
Sau3AI GATC 3 cut(s) 29, 35, 184
ScrFI CCNGG 2 cut(s) 189, 265
SduI GDGCHC 2 cut(s) 380, 420
Sfr274I CTCGAG 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 158, 379
SmoI CTYRAG 2 cut(s) 158, 379
Sse9I AATT 5 cut(s) 13, 19, 41, 55, 426
SsiI CCGC 1 cut(s) 320
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 187, 263
TaaI ACNGT 3 cut(s) 206, 253, 550
TaiI ACGT 1 cut(s) 582
TaqI TCGA 4 cut(s) 159, 222, 247, 307
TaqII GACCGA 1 cut(s) 188
TasI AATT 5 cut(s) 13, 19, 41, 55, 426
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 4 cut(s) 47, 219, 618, 625
Tru1I TTAA 3 cut(s) 63, 110, 344
Tru9I TTAA 3 cut(s) 63, 110, 344
TscAI CASTG 1 cut(s) 635
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 317, 491
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 48, 426, 476
TspRI CASTG 1 cut(s) 635
Tth111I GACNNNGTC 2 cut(s) 170, 271
XapI RAATTY 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 552
XmnI GAANNNNTTC 2 cut(s) 483, 531
XspI CTAG 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.