Rh2DG311400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017806
Physical Location & Seq
Forward (+)
38214037 .. 38235513
21477 bp
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UTR
Exon/CDS
Intron
Rh2DG311400.1

Sequence Viewer

Length: 402 bp
ATGAAGCATTCATCTGCAGGAAGCCGTATTGTTAGTATGAGCTCAAGATTGGGAAGACTAAATGGCAAACAAAATGAAGAGCACATTGAAATTGCCAAAGCCAAGAAAAAAGCAAGAGAAACAGAGTTGTGCTCATATGAGGAACAGCTTCATGCTACGGGAAAGCTCAACACCGGCAGAAATGATGGTTTGGCCATTGATCGTGGTAATGAGGAGGAAGTGATAGTTCTGAACTTCATGAAGAAGTCAAGGAAGGTGCTTTGCAACTTGAGAGACAGAAAGAGTTGTAACAAGTTAATGTTATATCATGGAAGGGCTCGAGACCTGAGTCTCTATCTATTTCCTAAAGTTCCTGCAAACCTGGTTGTACGAGACTACGAGGACCTAGATCATAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.21

Weight (kDa)

9.45

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 192
AfaI GTAC 1 cut(s) 369
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 3 cut(s) 42, 148, 166
AluI AGCT 3 cut(s) 42, 148, 166
Alw21I GWGCWC 3 cut(s) 44, 84, 134
Alw26I GTCTC 4 cut(s) 267, 315, 335, 366
Ama87I CYCGRG 1 cut(s) 318
AoxI GGCC 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 194
BanII GRGCYC 2 cut(s) 44, 319
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 3 cut(s) 44, 84, 134
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 362
BcoDI GTCTC 4 cut(s) 267, 315, 335, 366
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 362
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpuEI CTTGAG 2 cut(s) 28, 289
BsaBI GATNNNNATC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 315
Bse118I RCCGGY 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 1 cut(s) 362
BseJI GATNNNNATC 1 cut(s) 393
BseMII CTCAG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 227
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 3 cut(s) 44, 84, 134
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 4 cut(s) 267, 315, 335, 366
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 4 cut(s) 44, 84, 134, 319
Bsp143I GATC 2 cut(s) 199, 388
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssMI GATC 2 cut(s) 199, 388
Bst2UI CCWGG 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 326
BstKTI GATC 2 cut(s) 202, 391
BstMAI GTCTC 4 cut(s) 267, 315, 335, 366
BstMBI GATC 2 cut(s) 199, 388
BstNI CCWGG 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 194
CciI TCATGA 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 382
CsiI ACCWGGT 1 cut(s) 360
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 152, 238, 308
CviJI RGCY 7 cut(s) 24, 42, 101, 148, 166, 194, 317
CviKI_1 RGCY 7 cut(s) 24, 42, 101, 148, 166, 194, 317
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 201, 390
DpnII GATC 2 cut(s) 199, 388
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 2 cut(s) 44, 319
Eco31I GGTCTC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 44, 319
FaeI CATG 3 cut(s) 155, 241, 311
FaiI YATR 8 cut(s) 38, 136, 138, 153, 239, 304, 309, 393
FatI CATG 3 cut(s) 151, 237, 307
FauNDI CATATG 1 cut(s) 136
FriOI GRGCYC 2 cut(s) 44, 319
FspBI CTAG 1 cut(s) 386
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 174
Hin1II CATG 3 cut(s) 155, 241, 311
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 3 cut(s) 45, 238, 320
HpyAV CCTTC 2 cut(s) 247, 306
HpyCH4V TGCA 3 cut(s) 17, 264, 356
HpyF3I CTNAG 1 cut(s) 326
Hsp92II CATG 3 cut(s) 155, 241, 311
Kzo9I GATC 2 cut(s) 199, 388
LguI GCTCTTC 1 cut(s) 72
LpnPI CCDG 6 cut(s) 3, 187, 338, 347, 366, 374
MabI ACCWGGT 1 cut(s) 360
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 287
MalI GATC 2 cut(s) 201, 390
MboI GATC 2 cut(s) 199, 388
MboII GAAGA 3 cut(s) 66, 89, 253
MhlI GDGCHC 4 cut(s) 44, 84, 134, 319
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 1 cut(s) 90
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 4 cut(s) 133, 205, 208, 373
Mox20I TGGCCA 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 147
MscI TGGCCA 1 cut(s) 194
MseI TTAA 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 7
MvaI CCWGG 1 cut(s) 362
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 199, 388
NlaIII CATG 3 cut(s) 155, 241, 311
PaeR7I CTCGAG 1 cut(s) 318
PagI TCATGA 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 72
PctI GAATGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 147
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PpuMI RGGWCCY 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspPI GGNCC 1 cut(s) 382
PspPPI RGGWCCY 1 cut(s) 382
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SacI GAGCTC 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 296
Sau3AI GATC 2 cut(s) 199, 388
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 4 cut(s) 44, 84, 134, 319
SetI ASST 7 cut(s) 44, 150, 168, 258, 327, 363, 387
SexAI ACCWGGT 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 15
Sfr274I CTCGAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 382
SlaI CTCGAG 1 cut(s) 318
SmlI CTYRAG 3 cut(s) 43, 268, 318
SmoI CTYRAG 3 cut(s) 43, 268, 318
Sse9I AATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 360
TaqI TCGA 1 cut(s) 319
TasI AATT 1 cut(s) 90
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TspDTI ATGAA 5 cut(s) 17, 90, 140, 226, 254
VpaK11BI GGWCC 1 cut(s) 382
XhoI CTCGAG 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.