Rroxscaffold_2G00121410

ultraviolet-B receptor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
54020223 .. 54027536
7314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121410.1

Sequence Viewer

Length: 1419 bp
ATGGCAGAGCAACAAGTTGCTGCTCCAATTCGTCGTGTCCTTCTCATCTCCGCTGGTGCAAGTCACTCTGTTGCTCTTCTCTCTGATAATGTTGTTTGCTCTTGGGGACGAGGAGAGGATGGGCAGTTAGGCCATGCTGATGCCGAAGATCGATTTTCACCTACACATTTGAGCGCATTGGATGGCCATCAAATAGTATCTCTTACTTGTGGAGCTGATCATACAACTGCTTACTCTGACTCACGTTTGGAAGTCTATAGTTGGGGCTGGGGTGACTTTGGGAGATTAGGCCATGGCAATTCCAGCGACTTGTTTACACCTCAGCCAATAAAGGCATTACATGGTCTGAAGATAAGGCAGATTGCTTGTGGAGACAGCCATTGTTTAGCAGTGACGATGGAAGGTCAGTTGGGGCGGAATCAAAATGGTCAACTTGGTCTTGGCACCACAGAAGATTCTCTTGTGCCACAGAAGATTCAAGCGTTTCAGGGAGAGTTTATCAAAATGGTTGCTGCTGGTGCTGAACATACAGCAGCTGTTACAGAAGATGGGACATTGTACGGATGGGGATGGGGCCGCTATGGTAATTTGGGCTTAGGTGATAGAAATGATCGCTTGGTTCCAGAAAAGGTTTCTCTTGGTAATAATAGTGAGAAGATGGTTATGGTTGCATGTGGGTGGCGGCATACAATATCGGTTTCCTCGTCAGGTCAATTATACACATATGGATGGAGCAAATATGGTCAACTTGGACATGGTGATTTTGAGGATCACCTTGTACCTCACAAGCTAGAAGCCTTGAGTGACAAATTTATTTCTGAGGTTGCAGGTGGTTGGAGGCATACTATGGCATTAACATCTGATGGAAAACTTTATGGCTGGGGATGGAATAAGTTTGGACAGGTTGGAGTTGGTGACAATTTGGATCACTGTTCCCCTTTGCAAGTTAAATTTCCCAATGAGCAGAAAGTAGTTAAAATATCTTGTGGATGGAGACACACACTTGCTGTTACTGAAAGGCAGAATGTATTTTCATGGGGGAGAGGTACAAATGGGCAGCTTGGGCATGGGGAATCTGTTGACCGCCAAAAGCTGTTTGAGAAGTCTGCTCGGGAAAAATCTATGGTCAATCTTTTCTGCAGTAATAGTCTTGGTTGTGGCTATGCCTATTCTGGTCATGATGATACATTTCTGAATATTCCAAAGATTGTAGACTCTTTGAGTGCTGATGGATGTAGTGGGCAACAAATAGAATCTTCAACAGTTGATCCATCATCAGGGAAAACTTGGGTGTCGCCATCAGAGAGATATGCAGTTGTTCCTGATGAAACTGTTCGAGGGCAAACATCTGTTCCAGTTAAAGGGAATGGGAATGATGCAAGTGTTCCTGAAACTGACGTGAAACGCGTACGGCTTTAA

Protein Analysis

472

Amino Acids

51.12

Weight (kDa)

6.05

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 10 - 113 1.9e-24 RCC1-like domain
RCC1_2 PF13540 16 - 42 6.2e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 31 - 77 3.6e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 84 - 131 4.7e-16 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 107 - 366 7.7e-74 RCC1-like domain
RCC1 PF00415 138 - 180 5.6e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 170 - 195 8.9e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 183 - 232 1.8e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 223 - 249 2.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 236 - 285 1.2e-14 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 237 - 339 2.4e-09 Alsin RCC1-like domain
RCC1_2 PF13540 272 - 301 1.7e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 288 - 337 1e-16 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 324 - 353 2.7e-10 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012331)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 818
Acc36I ACCTGC 1 cut(s) 818
AccB1I GGYRCC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 1212
AccII CGCG 1 cut(s) 1407
AciI CCGC 5 cut(s) 51, 415, 577, 682, 1084
AclWI GGATC 3 cut(s) 777, 933, 1262
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 809, 950
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 4 cut(s) 560, 780, 1048, 1410
AfiI CCNNNNNNNGG 2 cut(s) 1277, 1361
AflIII ACRYGT 1 cut(s) 1405
AgsI TTSAA 2 cut(s) 479, 1260
AjiI CACGTC 1 cut(s) 1399
AluBI AGCT 5 cut(s) 215, 536, 790, 1060, 1093
AluI AGCT 5 cut(s) 215, 536, 790, 1060, 1093
Alw26I GTCTC 2 cut(s) 366, 988
AlwI GGATC 3 cut(s) 777, 933, 1262
AlwNI CAGNNNCTG 1 cut(s) 536
Ama87I CYCGRG 1 cut(s) 1110
AoxI GGCC 4 cut(s) 130, 184, 289, 574
ApeKI GCWGC 4 cut(s) 20, 512, 533, 1057
ApoI RAATTY 2 cut(s) 809, 950
Asp700I GAANNNNTTC 1 cut(s) 1332
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 574
AsuHPI GGTGA 6 cut(s) 150, 284, 611, 764, 770, 926
AvaI CYCGRG 1 cut(s) 1110
BalI TGGCCA 1 cut(s) 186
BanI GGYRCC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 4 cut(s) 7, 499, 545, 1069
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 366, 988
BfaI CTAG 1 cut(s) 791
BfmI CTRYAG 2 cut(s) 256, 1138
BfuAI ACCTGC 1 cut(s) 818
BisI GCNGC 6 cut(s) 21, 513, 534, 577, 683, 1058
BlsI GCNGC 6 cut(s) 22, 514, 535, 578, 684, 1059
BmeT110I CYCGRG 1 cut(s) 1110
BmgBI CACGTC 1 cut(s) 1399
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 3 cut(s) 445, 575, 621
BmsI GCATC 2 cut(s) 130, 1366
Bpu10I CCTNAGC 2 cut(s) 321, 595
BpuEI CTTGAG 1 cut(s) 820
Bsa29I ATCGAT 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 292
Bsc4I CCNNNNNNNGG 2 cut(s) 1277, 1361
Bse1I ACTGG 1 cut(s) 1355
Bse8I GATNNNNATC 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 8 cut(s) 124, 187, 569, 575, 734, 890, 995, 1238
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 1277, 1361
BseMII CTCAG 2 cut(s) 335, 810
BseNI ACTGG 1 cut(s) 1355
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 4 cut(s) 7, 499, 545, 1069
BseYI CCCAGC 2 cut(s) 267, 879
Bsh1236I CGCG 1 cut(s) 1407
BshFI GGCC 4 cut(s) 132, 186, 291, 576
BshNI GGYRCC 1 cut(s) 443
BshVI ATCGAT 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 1110
BsiWI CGTACG 1 cut(s) 1408
BslFI GGGAC 2 cut(s) 120, 565
BslI CCNNNNNNNGG 2 cut(s) 1277, 1361
BsmAI GTCTC 2 cut(s) 366, 988
BsmFI GGGAC 2 cut(s) 120, 565
BsnI GGCC 4 cut(s) 132, 186, 291, 576
BsoBI CYCGRG 1 cut(s) 1110
Bsp143I GATC 6 cut(s) 148, 217, 610, 769, 925, 1267
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 5 cut(s) 51, 415, 577, 682, 1084
BspANI GGCC 4 cut(s) 132, 186, 291, 576
BspCNI CTCAG 2 cut(s) 334, 811
BspDI ATCGAT 1 cut(s) 151
BspFNI CGCG 1 cut(s) 1407
BspHI TCATGA 1 cut(s) 1177
BspLI GGNNCC 3 cut(s) 445, 575, 621
BspMAI CTGCAG 1 cut(s) 1142
BspMI ACCTGC 1 cut(s) 818
BspPI GGATC 3 cut(s) 777, 933, 1262
BspQI GCTCTTC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 443
BsrI ACTGG 1 cut(s) 1355
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 6 cut(s) 148, 217, 610, 769, 925, 1267
BssT1I CCWWGG 1 cut(s) 292
Bst4CI ACNGT 3 cut(s) 932, 1264, 1333
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 321, 595, 819
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 8 cut(s) 124, 187, 569, 575, 734, 890, 995, 1238
BstFNI CGCG 1 cut(s) 1407
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 6 cut(s) 151, 220, 613, 772, 928, 1270
BstMAI GTCTC 2 cut(s) 366, 988
BstMBI GATC 6 cut(s) 148, 217, 610, 769, 925, 1267
BstMWI GCNNNNNNNGC 3 cut(s) 303, 518, 1063
BstNSI RCATGY 1 cut(s) 675
BstSFI CTRYAG 2 cut(s) 256, 1138
BstUI CGCG 1 cut(s) 1407
BstV1I GCAGC 4 cut(s) 7, 499, 545, 1069
Bsu15I ATCGAT 1 cut(s) 151
BsuRI GGCC 4 cut(s) 132, 186, 291, 576
BsuTUI ATCGAT 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 292
BtrI CACGTC 1 cut(s) 1399
BtsCI GGATG 8 cut(s) 124, 187, 569, 575, 734, 890, 995, 1238
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 396, 928
BveI ACCTGC 1 cut(s) 818
CaiI CAGNNNCTG 1 cut(s) 536
CciI TCATGA 1 cut(s) 1177
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 574
ClaI ATCGAT 1 cut(s) 151
Csp6I GTAC 4 cut(s) 559, 779, 1047, 1409
CviAII CATG 8 cut(s) 134, 293, 341, 672, 755, 1035, 1067, 1178
CviQI GTAC 4 cut(s) 559, 779, 1047, 1409
DdeI CTNAG 3 cut(s) 321, 595, 819
DpnI GATC 6 cut(s) 150, 219, 612, 771, 927, 1269
DpnII GATC 6 cut(s) 148, 217, 610, 769, 925, 1267
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 1110
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 8 cut(s) 137, 296, 344, 675, 758, 1038, 1070, 1181
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 2 cut(s) 120, 565
FatI CATG 8 cut(s) 133, 292, 340, 671, 754, 1034, 1066, 1177
FauNDI CATATG 1 cut(s) 724
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 1212
Fnu4HI GCNGC 6 cut(s) 21, 513, 534, 577, 683, 1058
FokI GGATG 8 cut(s) 131, 194, 576, 582, 741, 897, 1002, 1245
Fsp4HI GCNGC 6 cut(s) 21, 513, 534, 577, 683, 1058
FspBI CTAG 1 cut(s) 791
GlaI GCGC 1 cut(s) 175
GluI GCNGC 6 cut(s) 21, 513, 534, 577, 683, 1058
GsaI CCCAGC 2 cut(s) 271, 883
HaeIII GGCC 4 cut(s) 132, 186, 291, 576
HhaI GCGC 1 cut(s) 176
Hin1II CATG 8 cut(s) 137, 296, 344, 675, 758, 1038, 1070, 1181
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 3 cut(s) 431, 746, 1081
HindII GTYRAC 3 cut(s) 431, 746, 1081
HinfI GANTC 7 cut(s) 239, 418, 455, 475, 1073, 1214, 1253
HphI GGTGA 6 cut(s) 150, 284, 611, 764, 770, 926
Hpy166II GTNNAC 5 cut(s) 315, 431, 746, 1081, 1213
Hpy188I TCNGA 7 cut(s) 85, 238, 348, 820, 862, 1194, 1303
Hpy188III TCNNGA 5 cut(s) 623, 1112, 1178, 1322, 1388
Hpy8I GTNNAC 5 cut(s) 315, 431, 746, 1081, 1213
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 50, 395
HpyCH4III ACNGT 3 cut(s) 932, 1264, 1333
HpyCH4IV ACGT 2 cut(s) 244, 1398
HpyCH4V TGCA 7 cut(s) 59, 671, 827, 943, 1140, 1313, 1379
HpyF10VI GCNNNNNNNGC 3 cut(s) 303, 518, 1063
HpyF3I CTNAG 3 cut(s) 321, 595, 819
HpySE526I ACGT 2 cut(s) 244, 1398
Hsp92II CATG 8 cut(s) 137, 296, 344, 675, 758, 1038, 1070, 1181
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 6 cut(s) 148, 217, 610, 769, 925, 1267
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 3 cut(s) 28, 212, 732
Lsp1109I GCAGC 4 cut(s) 7, 499, 545, 1069
LweI GCATC 2 cut(s) 130, 1366
MaeI CTAG 1 cut(s) 791
MaeII ACGT 2 cut(s) 244, 1398
MaeIII GTNAC 7 cut(s) 62, 272, 391, 538, 803, 914, 1009
MalI GATC 6 cut(s) 150, 219, 612, 771, 927, 1269
MboI GATC 6 cut(s) 148, 217, 610, 769, 925, 1267
MboII GAAGA 8 cut(s) 68, 158, 361, 464, 484, 557, 667, 1248
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 7 cut(s) 27, 298, 586, 713, 809, 919, 950
MluI ACGCGT 1 cut(s) 1405
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 2 cut(s) 233, 1208
MmeI TCCRAC 2 cut(s) 815, 886
Mox20I TGGCCA 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 1332
MscI TGGCCA 1 cut(s) 186
MseI TTAA 5 cut(s) 854, 948, 975, 1359, 1417
MslI CAYNNNNRTG 3 cut(s) 138, 676, 727
Msp20I TGGCCA 1 cut(s) 186
MspA1I CMGCKG 2 cut(s) 53, 536
MvnI CGCG 1 cut(s) 1407
MwoI GCNNNNNNNGC 3 cut(s) 303, 518, 1063
NcoI CCATGG 1 cut(s) 292
NdeI CATATG 1 cut(s) 724
NdeII GATC 6 cut(s) 148, 217, 610, 769, 925, 1267
NlaIII CATG 8 cut(s) 137, 296, 344, 675, 758, 1038, 1070, 1181
NlaIV GGNNCC 3 cut(s) 445, 575, 621
NmuCI GTSAC 5 cut(s) 62, 272, 391, 803, 914
NspI RCATGY 1 cut(s) 675
PagI TCATGA 1 cut(s) 1177
PaqCI CACCTGC 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 81
PcsI WCGNNNNNNNCGW 2 cut(s) 701, 1404
PdmI GAANNNNTTC 1 cut(s) 1332
PfeI GAWTC 5 cut(s) 418, 455, 475, 1073, 1253
Pfl23II CGTACG 1 cut(s) 1408
PkrI GCNGC 6 cut(s) 22, 514, 535, 578, 684, 1059
PleI GAGTC 2 cut(s) 233, 1208
PpsI GAGTC 2 cut(s) 233, 1208
PspFI CCCAGC 2 cut(s) 267, 879
PspLI CGTACG 1 cut(s) 1408
PspN4I GGNNCC 3 cut(s) 445, 575, 621
PspPI GGNCC 1 cut(s) 574
PstI CTGCAG 1 cut(s) 1142
PstNI CAGNNNCTG 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 4 cut(s) 560, 780, 1048, 1410
RsaNI GTAC 4 cut(s) 559, 779, 1047, 1409
RseI CAYNNNNRTG 3 cut(s) 138, 676, 727
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 5 cut(s) 854, 948, 975, 1359, 1417
SatI GCNGC 6 cut(s) 21, 513, 534, 577, 683, 1058
Sau3AI GATC 6 cut(s) 148, 217, 610, 769, 925, 1267
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 2 cut(s) 233, 1208
SfaNI GCATC 2 cut(s) 130, 1366
SfcI CTRYAG 2 cut(s) 256, 1138
SmiMI CAYNNNNRTG 3 cut(s) 138, 676, 727
SmlI CTYRAG 1 cut(s) 799
SmoI CTYRAG 1 cut(s) 799
Sse9I AATT 7 cut(s) 27, 298, 586, 713, 809, 919, 950
SsiI CCGC 5 cut(s) 51, 415, 577, 682, 1084
SspI AATATT 1 cut(s) 1198
SspMI CTAG 1 cut(s) 791
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 3 cut(s) 932, 1264, 1333
TaiI ACGT 2 cut(s) 247, 1401
TaqI TCGA 2 cut(s) 151, 1336
TasI AATT 7 cut(s) 27, 298, 586, 713, 809, 919, 950
TauI GCSGC 2 cut(s) 579, 685
TfiI GAWTC 5 cut(s) 418, 455, 475, 1073, 1253
Tru1I TTAA 5 cut(s) 854, 948, 975, 1359, 1417
Tru9I TTAA 5 cut(s) 854, 948, 975, 1359, 1417
TscAI CASTG 2 cut(s) 396, 935
TseFI GTSAC 5 cut(s) 62, 272, 391, 803, 914
TseI GCWGC 4 cut(s) 20, 512, 533, 1057
Tsp45I GTSAC 5 cut(s) 62, 272, 391, 803, 914
TspDTI ATGAA 2 cut(s) 1023, 1341
TspGWI ACGGA 1 cut(s) 576
TspRI CASTG 2 cut(s) 396, 935
XapI RAATTY 2 cut(s) 809, 950
XceI RCATGY 1 cut(s) 675
XmiI GTMKAC 1 cut(s) 1212
XmnI GAANNNNTTC 1 cut(s) 1332
XspI CTAG 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.