Rw2G023810

ultraviolet-B receptor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
34886005 .. 34893866
7862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023810.1

Sequence Viewer

Length: 1437 bp
ATGGAAGAAGAAGAAGCAGATGGATGGGCCACGGGCATTGAATGCACATTCGGGACTCTTCTGAATATCTTAAAACTATTTGTCAGTCGGTCCCTCTCACGTTTTGACATCAAAGCAACAATGGCAGAGCAACAAGTTGCTGCTCCAATTCGTCGTGTCCTTCTCATCTCCGCTGGTGCAAGTCACTCTGTTGCTCTTCTCTCTGGTAATGTTGTCTGCTCTTGGGGACGAGGAGAGGATGGGCAGCTAGGCCATGCTGATGCCGAAGATCGATTTTCACCTACACATTTGAGCGCATTGGATGGCCATCAAATAGTATCTCTTACTTGTGGAGCTGATCATACAACTGCTTACTCTGACTCACGTTTGGAAGTCTATAGTTGGGGCTGGGGTGACTTTGGGAGATTAGGTCATGGCAATTCTAGCGACTTGTTTACACCTCAGCCAATAAAGGCATTACATGGTCTGAAGATAAGGCAGATTGCTTGTGGAGACAGCCATTGCTTAGCAGTGACGATGGAAGGTCAGGTACAAAGTTGGGGGCGGAATCAAAATGGTCAACTTGGTCTTGGCACCACAGAAGATTCTCTTGTGCCACAGAAGATTCAAGCGTTTCAGGGAGAGTTTATCAAAATGGTTGCTGCTGGTGCTGAACATACAGCAGCTGTTACAGAAGATGGGACATTGTACGGATGGGGATGGGGCCGCTATGGTAATTTGGGCTTAGGTGATAGAAATGATCGCTTGGTTCCAGAAAAGGTTTCTCTTGGTAATAGTGAGAAGATGGTTATGGTTGCATGTGGGTGGCGGCATACAATATCGGTTTCCTCGTCAGGTCAATTATACACATATGGGTGGAGCAAATATGGTCAACTTGGACATGGTGATTTTGAGGATCACCTTGTACCTCACAAGCTAGAAGCCTTGAGTGACAACTTTATTTCTGAGGTTGCCGGTGGTTGGAGGCATACTATGGCATTAACATCTGATGGAAAACTTTATGGCTGGGGATGGAATAAGTTTGGACAGGTTGGAGTTGGTGACAATTTGGATCACTGTTCCCCTTTGCAAGTTAAATTTCCCAATGAGCAGAAAGTAGTTAAAATATCTTGTGGATGGAGACACACACTTGCTGTTACTGAAAGGCAAAATGTATTTTCATGGGGGAGAGGTACAAATGGACAGCTTGGGCATGGGGAATCTGTTGACCGGAATATTCCAAAGATTATAGACTCTTTGAGTGCTGATGGATGTAGTGGGCAACAGATAGAATCTTCAACAGTTGATCCATCAACAGGGAAAACTTGGGTGTCGCCATCAGAGAGATATGCAGTTGTTCCTGATGAAACTGTTCGAGGGCAAACATCTGTTCCAGTCAAAGGGAATGGGAATGATGCAAGTGTTCCTGAAACTGACGTGAAACGCGTACGGCTTTAA

Protein Analysis

478

Amino Acids

51.8

Weight (kDa)

5.78

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 45 - 153 8.3e-24 RCC1-like domain
RCC1 PF00415 72 - 117 6.1e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 124 - 171 4.8e-16 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 149 - 413 4.1e-79 RCC1-like domain
RCC1_2 PF13540 158 - 187 1e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 174 - 223 1.5e-16 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 213 - 238 9e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 226 - 274 1e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 265 - 291 2.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 278 - 327 6.9e-15 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 279 - 364 5.8e-09 Alsin RCC1-like domain
RCC1_2 PF13540 314 - 343 1.7e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 330 - 379 1e-16 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 366 - 395 2.7e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 385 - 414 8e-08 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012331)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 572
AccII CGCG 1 cut(s) 1425
AciI CCGC 4 cut(s) 171, 544, 706, 808
AclWI GGATC 3 cut(s) 903, 1059, 1280
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 1076
AcuI CTGAAG 1 cut(s) 488
AfaI GTAC 5 cut(s) 531, 689, 906, 1174, 1428
AfiI CCNNNNNNNGG 3 cut(s) 960, 1295, 1379
AflIII ACRYGT 1 cut(s) 1423
AgsI TTSAA 3 cut(s) 41, 608, 1278
AjiI CACGTC 1 cut(s) 1417
AluBI AGCT 5 cut(s) 247, 335, 665, 916, 1186
AluI AGCT 5 cut(s) 247, 335, 665, 916, 1186
Alw26I GTCTC 2 cut(s) 486, 1114
AlwI GGATC 3 cut(s) 903, 1059, 1280
AlwNI CAGNNNCTG 1 cut(s) 665
AoxI GGCC 4 cut(s) 27, 250, 304, 703
ApeKI GCWGC 4 cut(s) 140, 244, 641, 662
ApoI RAATTY 1 cut(s) 1076
Asp700I GAANNNNTTC 1 cut(s) 1350
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 3 cut(s) 27, 90, 703
AsuHPI GGTGA 6 cut(s) 270, 404, 740, 890, 896, 1052
AvaII GGWCC 1 cut(s) 90
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 4 cut(s) 127, 256, 628, 674
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 486, 1114
BfaI CTAG 3 cut(s) 248, 423, 917
BfmI CTRYAG 1 cut(s) 376
BisI GCNGC 6 cut(s) 141, 245, 642, 663, 706, 809
BlpI GCTNAGC 1 cut(s) 505
BlsI GCNGC 6 cut(s) 142, 246, 643, 664, 707, 810
Bme18I GGWCC 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 1417
BmgT120I GGNCC 3 cut(s) 27, 90, 703
BmiI GGNNCC 4 cut(s) 92, 574, 704, 750
BmsI GCATC 2 cut(s) 250, 1384
Bpu10I CCTNAGC 2 cut(s) 441, 724
Bpu1102I GCTNAGC 1 cut(s) 505
BpuEI CTTGAG 1 cut(s) 946
Bsa29I ATCGAT 1 cut(s) 271
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 1209
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 960, 1295, 1379
Bse118I RCCGGY 1 cut(s) 953
Bse1I ACTGG 1 cut(s) 1373
Bse3DI GCAATG 1 cut(s) 499
Bse8I GATNNNNATC 1 cut(s) 306
BseCI ATCGAT 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 8 cut(s) 29, 244, 307, 698, 704, 1016, 1121, 1256
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 960, 1295, 1379
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 2 cut(s) 455, 936
BseNI ACTGG 1 cut(s) 1373
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 4 cut(s) 127, 256, 628, 674
BseYI CCCAGC 2 cut(s) 387, 1005
Bsh1236I CGCG 1 cut(s) 1425
BshFI GGCC 4 cut(s) 29, 252, 306, 705
BshNI GGYRCC 1 cut(s) 572
BshVI ATCGAT 1 cut(s) 271
BsiSI CCGG 2 cut(s) 954, 1210
BsiWI CGTACG 1 cut(s) 1426
BslFI GGGAC 4 cut(s) 67, 76, 240, 694
BslI CCNNNNNNNGG 3 cut(s) 960, 1295, 1379
BsmAI GTCTC 2 cut(s) 486, 1114
BsmFI GGGAC 4 cut(s) 67, 76, 240, 694
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 4 cut(s) 29, 252, 306, 705
Bsp143I GATC 6 cut(s) 268, 337, 739, 895, 1051, 1285
Bsp1720I GCTNAGC 1 cut(s) 505
BspACI CCGC 4 cut(s) 171, 544, 706, 808
BspANI GGCC 4 cut(s) 29, 252, 306, 705
BspCNI CTCAG 2 cut(s) 454, 937
BspDI ATCGAT 1 cut(s) 271
BspFNI CGCG 1 cut(s) 1425
BspLI GGNNCC 4 cut(s) 92, 574, 704, 750
BspPI GGATC 3 cut(s) 903, 1059, 1280
BspQI GCTCTTC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 572
BsrDI GCAATG 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 953
BsrI ACTGG 1 cut(s) 1373
BssAI RCCGGY 1 cut(s) 953
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 6 cut(s) 268, 337, 739, 895, 1051, 1285
Bst4CI ACNGT 3 cut(s) 1058, 1282, 1351
Bst6I CTCTTC 2 cut(s) 63, 201
BstAPI GCANNNNNTGC 1 cut(s) 42
BstDEI CTNAG 4 cut(s) 441, 505, 724, 945
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 8 cut(s) 29, 244, 307, 698, 704, 1016, 1121, 1256
BstFNI CGCG 1 cut(s) 1425
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 6 cut(s) 271, 340, 742, 898, 1054, 1288
BstMAI GTCTC 2 cut(s) 486, 1114
BstMBI GATC 6 cut(s) 268, 337, 739, 895, 1051, 1285
BstMWI GCNNNNNNNGC 4 cut(s) 42, 122, 423, 647
BstNSI RCATGY 1 cut(s) 801
BstSFI CTRYAG 1 cut(s) 376
BstUI CGCG 1 cut(s) 1425
BstV1I GCAGC 4 cut(s) 127, 256, 628, 674
Bsu15I ATCGAT 1 cut(s) 271
BsuRI GGCC 4 cut(s) 29, 252, 306, 705
BsuTUI ATCGAT 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 1417
BtsCI GGATG 8 cut(s) 29, 244, 307, 698, 704, 1016, 1121, 1256
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 516, 1054
CaiI CAGNNNCTG 1 cut(s) 665
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 953
Cfr13I GGNCC 3 cut(s) 27, 90, 703
ClaI ATCGAT 1 cut(s) 271
Csp6I GTAC 5 cut(s) 530, 688, 905, 1173, 1427
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 7 cut(s) 254, 413, 461, 798, 881, 1161, 1193
CviQI GTAC 5 cut(s) 530, 688, 905, 1173, 1427
DdeI CTNAG 4 cut(s) 441, 505, 724, 945
DpnI GATC 6 cut(s) 270, 339, 741, 897, 1053, 1287
DpnII GATC 6 cut(s) 268, 337, 739, 895, 1051, 1285
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 63, 201
EarI CTCTTC 2 cut(s) 63, 201
EciI GGCGGA 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 488
FaeI CATG 7 cut(s) 257, 416, 464, 801, 884, 1164, 1196
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 4 cut(s) 67, 76, 240, 694
FatI CATG 7 cut(s) 253, 412, 460, 797, 880, 1160, 1192
FauNDI CATATG 1 cut(s) 850
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 6 cut(s) 141, 245, 642, 663, 706, 809
FokI GGATG 8 cut(s) 36, 251, 314, 705, 711, 1023, 1128, 1263
Fsp4HI GCNGC 6 cut(s) 141, 245, 642, 663, 706, 809
FspBI CTAG 3 cut(s) 248, 423, 917
GlaI GCGC 1 cut(s) 295
GluI GCNGC 6 cut(s) 141, 245, 642, 663, 706, 809
GsaI CCCAGC 2 cut(s) 391, 1009
HaeIII GGCC 4 cut(s) 29, 252, 306, 705
HapII CCGG 2 cut(s) 954, 1210
HhaI GCGC 1 cut(s) 296
Hin1II CATG 7 cut(s) 257, 416, 464, 801, 884, 1164, 1196
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 3 cut(s) 560, 872, 1207
HindII GTYRAC 3 cut(s) 560, 872, 1207
HinfI GANTC 8 cut(s) 55, 359, 547, 584, 604, 1199, 1232, 1271
HpaII CCGG 2 cut(s) 954, 1210
HphI GGTGA 6 cut(s) 270, 404, 740, 890, 896, 1052
Hpy166II GTNNAC 4 cut(s) 435, 560, 872, 1207
Hpy188I TCNGA 6 cut(s) 63, 358, 468, 946, 988, 1321
Hpy188III TCNNGA 4 cut(s) 52, 752, 1340, 1406
Hpy8I GTNNAC 4 cut(s) 435, 560, 872, 1207
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 170, 515
HpyCH4III ACNGT 3 cut(s) 1058, 1282, 1351
HpyCH4IV ACGT 3 cut(s) 100, 364, 1416
HpyCH4V TGCA 6 cut(s) 45, 179, 797, 1069, 1331, 1397
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 122, 423, 647
HpyF3I CTNAG 4 cut(s) 441, 505, 724, 945
HpySE526I ACGT 3 cut(s) 100, 364, 1416
Hsp92II CATG 7 cut(s) 257, 416, 464, 801, 884, 1164, 1196
HspAI GCGC 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 6 cut(s) 268, 337, 739, 895, 1051, 1285
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 3 cut(s) 148, 332, 858
Lsp1109I GCAGC 4 cut(s) 127, 256, 628, 674
LweI GCATC 2 cut(s) 250, 1384
MaeI CTAG 3 cut(s) 248, 423, 917
MaeII ACGT 3 cut(s) 100, 364, 1416
MaeIII GTNAC 7 cut(s) 182, 392, 511, 667, 929, 1040, 1135
MalI GATC 6 cut(s) 270, 339, 741, 897, 1053, 1287
MboI GATC 6 cut(s) 268, 337, 739, 895, 1051, 1285
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 6 cut(s) 147, 418, 715, 839, 1045, 1076
MluI ACGCGT 1 cut(s) 1423
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 3 cut(s) 49, 353, 1226
MmeI TCCRAC 2 cut(s) 941, 1012
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 1350
MscI TGGCCA 1 cut(s) 306
MseI TTAA 5 cut(s) 71, 980, 1074, 1101, 1435
MslI CAYNNNNRTG 3 cut(s) 258, 802, 853
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 2 cut(s) 173, 665
MspI CCGG 2 cut(s) 954, 1210
Mva1269I GAATGC 1 cut(s) 47
MvnI CGCG 1 cut(s) 1425
MwoI GCNNNNNNNGC 4 cut(s) 42, 122, 423, 647
NdeI CATATG 1 cut(s) 850
NdeII GATC 6 cut(s) 268, 337, 739, 895, 1051, 1285
NlaIII CATG 7 cut(s) 257, 416, 464, 801, 884, 1164, 1196
NlaIV GGNNCC 4 cut(s) 92, 574, 704, 750
NmuCI GTSAC 5 cut(s) 182, 392, 511, 929, 1040
NspI RCATGY 1 cut(s) 801
PciSI GCTCTTC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 2 cut(s) 827, 1422
PctI GAATGC 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 1350
PfeI GAWTC 5 cut(s) 547, 584, 604, 1199, 1271
Pfl23II CGTACG 1 cut(s) 1426
PkrI GCNGC 6 cut(s) 142, 246, 643, 664, 707, 810
PleI GAGTC 3 cut(s) 49, 353, 1226
PpsI GAGTC 3 cut(s) 49, 353, 1226
PspFI CCCAGC 2 cut(s) 387, 1005
PspLI CGTACG 1 cut(s) 1426
PspN4I GGNNCC 4 cut(s) 92, 574, 704, 750
PspPI GGNCC 3 cut(s) 27, 90, 703
PstNI CAGNNNCTG 1 cut(s) 665
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 5 cut(s) 531, 689, 906, 1174, 1428
RsaNI GTAC 5 cut(s) 530, 688, 905, 1173, 1427
RseI CAYNNNNRTG 3 cut(s) 258, 802, 853
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 5 cut(s) 71, 980, 1074, 1101, 1435
SatI GCNGC 6 cut(s) 141, 245, 642, 663, 706, 809
Sau3AI GATC 6 cut(s) 268, 337, 739, 895, 1051, 1285
Sau96I GGNCC 3 cut(s) 27, 90, 703
SchI GAGTC 3 cut(s) 49, 353, 1226
SfaNI GCATC 2 cut(s) 250, 1384
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 3 cut(s) 258, 802, 853
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
Sse9I AATT 6 cut(s) 147, 418, 715, 839, 1045, 1076
SsiI CCGC 4 cut(s) 171, 544, 706, 808
SspI AATATT 1 cut(s) 1216
SspMI CTAG 3 cut(s) 248, 423, 917
TaaI ACNGT 3 cut(s) 1058, 1282, 1351
TaiI ACGT 3 cut(s) 103, 367, 1419
TaqI TCGA 2 cut(s) 271, 1354
TaqII GACCGA 1 cut(s) 78
TasI AATT 6 cut(s) 147, 418, 715, 839, 1045, 1076
TauI GCSGC 2 cut(s) 708, 811
TfiI GAWTC 5 cut(s) 547, 584, 604, 1199, 1271
Tru1I TTAA 5 cut(s) 71, 980, 1074, 1101, 1435
Tru9I TTAA 5 cut(s) 71, 980, 1074, 1101, 1435
TscAI CASTG 2 cut(s) 516, 1061
TseFI GTSAC 5 cut(s) 182, 392, 511, 929, 1040
TseI GCWGC 4 cut(s) 140, 244, 641, 662
Tsp45I GTSAC 5 cut(s) 182, 392, 511, 929, 1040
TspDTI ATGAA 2 cut(s) 1149, 1359
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 516, 1061
VpaK11BI GGWCC 1 cut(s) 90
XapI RAATTY 1 cut(s) 1076
XceI RCATGY 1 cut(s) 801
XmnI GAANNNNTTC 1 cut(s) 1350
XspI CTAG 3 cut(s) 248, 423, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.