Rorug02G0241000

ultraviolet-B receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012331
Physical Location & Seq
Reverse (-)
24760857 .. 24761990
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0241000.1

Sequence Viewer

Length: 1134 bp
ATGATGCAAGTCTACGGAAACCAGAGAGGTCCTTATGGTCCAATGAAGAATTCTATGGTTCCTGTCAAGAATCAAGATCCATGTAAGCCACGCTATATGCCTTTTCCGGCTAATCACCGGAACCAGGTGCCGCCGGTCGGTCATTTTCAGCCCCAATTTCTTCCACCTCGACCAAATTTCTACCCATTCCCACAAACCCTCGTGCCACCTTATTCATCTGGTGGGTACAATTTTCAGGGGCAGGGTGATTCTACTTCAGCAAGTTCTGTCCCTCATCGTCTACCATCACAATGCGTAACTCCGGTTAACAGTGCTGGTCCAGTAGTCTCCGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGATCTCATTCAAAAATCAAAGCAGAGGAGGACTGGAGGGTACTAGTTCACTAAATTCTGTACCTCTTGTACCACAGCGAGGCGCAATTCCTGTTCAAAATGCTGCTGTTGATGTTCCAGTAGTAGTTCCTGGTTTAATTGATGCTCTCCTGGCACAAGGTGTGATTTCGTTGAAGAAACAAAGCCCGACACTGAAAGAGGAGAAGGATGCTGTGGTAGGATGTGAGTTTTCCGGCCTTGATCTAAATCTGTGTCGCGAATCTGTGGTAATCGGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAGAACAACACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGGATATCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACTTTTATGCAACTACAAGCATGTGGCTTGTTACTGATGTAGAGGCTGAGGCTGAGGCATTACCTTCTGGTGTAATTTTGTGCACTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAAACTAGTGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAGAGTAAATGTGCCTTATGCACAGATGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGTGCTGTTTACTTGAATGCGCCTCAGGGGCCAGCGCCGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTGCGGAGGACTTGA

Protein Analysis

377

Amino Acids

41.3

Weight (kDa)

8.78

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_PCFS4 PF23228 302 - 368 4.2e-28 PCFS4 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63860
fragaria_vesca FvH4_1g25000 FvH4_1g25000
malus_domestica MD15G1136000.v1.1
prunus_persica Prupe.4G277200_v2.0.a1
pyrus_communis pycom15g12260
rosa_chinensis RchiOBHm_Chr2g0122641
rosa_laevigata RLG00000018697
rosa_multiflora Rmu_sc0003133.1_g000023
rosa_roxburghii Rroxscaffold_2G00121410
rosa_rugosa Rorug02G0240700 Rorug02G0240800 Rorug02G0240900 Rorug02G0241000
rosa_samantha Rh2AG298800 Rh2BG307700 Rh2CG285800 Rh2DG322400
rosa_wichuraiana Rw2G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 1095
AccI GTMKAC 2 cut(s) 12, 280
AccII CGCG 1 cut(s) 618
AciI CCGC 5 cut(s) 131, 754, 881, 926, 1123
AclWI GGATC 3 cut(s) 71, 942, 1065
AcsI RAATTY 3 cut(s) 49, 175, 415
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 2 cut(s) 359, 521
AfaI GTAC 4 cut(s) 227, 403, 423, 432
AfiI CCNNNNNNNGG 4 cut(s) 124, 137, 440, 1095
AgsI TTSAA 5 cut(s) 373, 458, 535, 688, 1027
AhlI ACTAGT 2 cut(s) 404, 899
AjnI CCWGG 3 cut(s) 123, 490, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AloI GAACNNNNNNTCC 2 cut(s) 728, 760
AluBI AGCT 1 cut(s) 672
AluI AGCT 1 cut(s) 672
Alw21I GWGCWC 1 cut(s) 860
Alw26I GTCTC 2 cut(s) 331, 348
Alw44I GTGCAC 1 cut(s) 856
AlwI GGATC 3 cut(s) 71, 942, 1065
AoxI GGCC 3 cut(s) 595, 676, 1040
ApaLI GTGCAC 1 cut(s) 856
ApeKI GCWGC 2 cut(s) 464, 708
ApoI RAATTY 3 cut(s) 49, 175, 415
AspLEI GCGC 3 cut(s) 446, 1033, 1048
AspS9I GGNCC 5 cut(s) 29, 38, 317, 1040, 1073
AsuHPI GGTGA 2 cut(s) 107, 257
AvaII GGWCC 4 cut(s) 29, 38, 317, 1073
AxyI CCTNAGG 1 cut(s) 1035
BaeGI GKGCMC 1 cut(s) 860
BanI GGYRCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 860
BbvCI CCTCAGC 2 cut(s) 822, 828
BbvI GCAGC 2 cut(s) 451, 720
BccI CCATC 2 cut(s) 292, 1048
BciT130I CCWGG 3 cut(s) 125, 492, 512
BcoDI GTCTC 2 cut(s) 331, 348
BcuI ACTAGT 2 cut(s) 404, 899
BfaI CTAG 2 cut(s) 405, 900
BfmI CTRYAG 1 cut(s) 1077
BfoI RGCGCY 1 cut(s) 1049
BglI GCCNNNNNGGC 1 cut(s) 1039
BisI GCNGC 3 cut(s) 131, 465, 709
BlsI GCNGC 3 cut(s) 132, 466, 710
Bme1390I CCNGG 3 cut(s) 125, 492, 512
Bme18I GGWCC 4 cut(s) 29, 38, 317, 1073
BmgT120I GGNCC 5 cut(s) 29, 38, 317, 1040, 1073
BmiI GGNNCC 5 cut(s) 60, 122, 129, 1041, 1074
BmrFI CCNGG 3 cut(s) 125, 492, 512
BmsI GCATC 3 cut(s) 493, 559, 952
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 2 cut(s) 822, 828
BsaBI GATNNNNATC 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 656
BsaWI WCCGGW 5 cut(s) 117, 301, 329, 681, 738
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 137, 440, 1095
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 4 cut(s) 320, 399, 479, 870
Bse21I CCTNAGG 1 cut(s) 1035
Bse3DI GCAATG 1 cut(s) 668
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 3 cut(s) 125, 492, 512
BseDI CCNNGG 1 cut(s) 656
BseGI GGATG 3 cut(s) 574, 587, 1008
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 4 cut(s) 124, 137, 440, 1095
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 3 cut(s) 813, 819, 1049
BseNI ACTGG 4 cut(s) 320, 399, 479, 870
BseRI GAGGAG 2 cut(s) 402, 575
BseSI GKGCMC 1 cut(s) 860
BseXI GCAGC 2 cut(s) 451, 720
Bsh1236I CGCG 1 cut(s) 618
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 597, 678, 1042
BshNI GGYRCC 1 cut(s) 127
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 860
BsiSI CCGG 9 cut(s) 107, 118, 134, 302, 330, 594, 682, 739, 1049
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 4 cut(s) 124, 137, 440, 1095
BsmAI GTCTC 2 cut(s) 331, 348
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 3 cut(s) 597, 678, 1042
Bso31I GGTCTC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 860
Bsp143I GATC 5 cut(s) 76, 363, 601, 934, 1057
Bsp68I TCGCGA 1 cut(s) 618
BspACI CCGC 5 cut(s) 131, 754, 881, 926, 1123
BspANI GGCC 3 cut(s) 597, 678, 1042
BspCNI CTCAG 3 cut(s) 814, 820, 1048
BspFNI CGCG 1 cut(s) 618
BspHI TCATGA 1 cut(s) 985
BspLI GGNNCC 5 cut(s) 60, 122, 129, 1041, 1074
BspPI GGATC 3 cut(s) 71, 942, 1065
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 4 cut(s) 320, 399, 479, 870
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 656
BssMI GATC 5 cut(s) 76, 363, 601, 934, 1057
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 656
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 3 cut(s) 125, 492, 512
Bst4CI ACNGT 2 cut(s) 311, 1068
BstC8I GCNNGC 2 cut(s) 758, 1044
BstDEI CTNAG 3 cut(s) 822, 828, 1035
BstF5I GGATG 3 cut(s) 574, 587, 1008
BstFNI CGCG 1 cut(s) 618
BstH2I RGCGCY 1 cut(s) 1049
BstHHI GCGC 3 cut(s) 446, 1033, 1048
BstKTI GATC 5 cut(s) 79, 366, 604, 937, 1060
BstMAI GTCTC 2 cut(s) 331, 348
BstMBI GATC 5 cut(s) 76, 363, 601, 934, 1057
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 512, 1039
BstNI CCWGG 3 cut(s) 125, 492, 512
BstNSI RCATGY 2 cut(s) 728, 799
BstSCI CCNGG 3 cut(s) 123, 490, 510
BstSFI CTRYAG 1 cut(s) 1077
BstSLI GKGCMC 1 cut(s) 860
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 2 cut(s) 451, 720
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 877
BstYI RGATCY 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 1035
BsuRI GGCC 3 cut(s) 597, 678, 1042
BtsCI GGATG 3 cut(s) 574, 587, 1008
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 4 cut(s) 316, 551, 858, 877
BtuMI TCGCGA 1 cut(s) 618
Cac8I GCNNGC 2 cut(s) 758, 1044
CciI TCATGA 1 cut(s) 985
CfoI GCGC 3 cut(s) 446, 1033, 1048
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 5 cut(s) 29, 38, 317, 1040, 1073
CsiI ACCWGGT 1 cut(s) 123
Csp6I GTAC 4 cut(s) 226, 402, 422, 431
CviAII CATG 5 cut(s) 81, 725, 796, 986, 1085
CviQI GTAC 4 cut(s) 226, 402, 422, 431
DdeI CTNAG 3 cut(s) 822, 828, 1035
DpnI GATC 5 cut(s) 78, 365, 603, 936, 1059
DpnII GATC 5 cut(s) 76, 363, 601, 934, 1057
DraIII CACNNNGTG 2 cut(s) 359, 521
EciI GGCGGA 1 cut(s) 896
Eco130I CCWWGG 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 348
Eco32I GATATC 1 cut(s) 744
Eco47I GGWCC 4 cut(s) 29, 38, 317, 1073
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 1035
EcoO109I RGGNCCY 2 cut(s) 29, 1073
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 3 cut(s) 123, 490, 510
EcoRV GATATC 1 cut(s) 744
EcoT14I CCWWGG 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 656
FaeI CATG 5 cut(s) 84, 728, 799, 989, 1088
FaqI GGGAC 1 cut(s) 254
FatI CATG 5 cut(s) 80, 724, 795, 985, 1084
FauI CCCGC 1 cut(s) 761
FauNDI CATATG 1 cut(s) 714
FblI GTMKAC 2 cut(s) 12, 280
Fnu4HI GCNGC 3 cut(s) 131, 465, 709
FokI GGATG 3 cut(s) 581, 594, 1015
Fsp4HI GCNGC 3 cut(s) 131, 465, 709
FspBI CTAG 2 cut(s) 405, 900
GlaI GCGC 3 cut(s) 445, 1032, 1047
GluI GCNGC 3 cut(s) 131, 465, 709
GsuI CTGGAG 1 cut(s) 416
HaeII RGCGCY 1 cut(s) 1049
HaeIII GGCC 3 cut(s) 597, 678, 1042
HapII CCGG 9 cut(s) 107, 118, 134, 302, 330, 594, 682, 739, 1049
HhaI GCGC 3 cut(s) 446, 1033, 1048
Hin1II CATG 5 cut(s) 84, 728, 799, 989, 1088
Hin6I GCGC 3 cut(s) 444, 1031, 1046
HinP1I GCGC 3 cut(s) 444, 1031, 1046
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 70, 248, 620
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 9 cut(s) 107, 118, 134, 302, 330, 594, 682, 739, 1049
HphI GGTGA 2 cut(s) 107, 257
Hpy166II GTNNAC 6 cut(s) 13, 281, 307, 410, 858, 1021
Hpy188I TCNGA 2 cut(s) 939, 1102
Hpy188III TCNNGA 5 cut(s) 67, 74, 617, 730, 986
Hpy8I GTNNAC 6 cut(s) 13, 281, 307, 410, 858, 1021
HpyAV CCTTC 2 cut(s) 559, 849
HpyCH4III ACNGT 2 cut(s) 311, 1068
HpyCH4IV ACGT 1 cut(s) 1117
HpyCH4V TGCA 4 cut(s) 7, 785, 858, 957
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 1039
HpyF3I CTNAG 3 cut(s) 822, 828, 1035
HpySE526I ACGT 1 cut(s) 1117
Hsp92II CATG 5 cut(s) 84, 728, 799, 989, 1088
HspAI GCGC 3 cut(s) 444, 1031, 1046
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 5 cut(s) 76, 363, 601, 934, 1057
Lsp1109I GCAGC 2 cut(s) 451, 720
LweI GCATC 3 cut(s) 493, 559, 952
MabI ACCWGGT 1 cut(s) 123
MaeI CTAG 2 cut(s) 405, 900
MaeII ACGT 1 cut(s) 1117
MaeIII GTNAC 4 cut(s) 295, 773, 805, 1062
MalI GATC 5 cut(s) 78, 365, 603, 936, 1059
MboI GATC 5 cut(s) 76, 363, 601, 934, 1057
MboII GAAGA 6 cut(s) 58, 152, 547, 707, 745, 920
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 860
MluCI AATT 8 cut(s) 49, 155, 175, 229, 415, 447, 498, 849
MmeI TCCRAC 1 cut(s) 1080
MseI TTAA 2 cut(s) 306, 497
MslI CAYNNNNRTG 1 cut(s) 289
MspI CCGG 9 cut(s) 107, 118, 134, 302, 330, 594, 682, 739, 1049
MspR9I CCNGG 3 cut(s) 125, 492, 512
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 3 cut(s) 125, 492, 512
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 2 cut(s) 512, 1039
NdeI CATATG 1 cut(s) 714
NdeII GATC 5 cut(s) 76, 363, 601, 934, 1057
NlaIII CATG 5 cut(s) 84, 728, 799, 989, 1088
NlaIV GGNNCC 5 cut(s) 60, 122, 129, 1041, 1074
NmuCI GTSAC 1 cut(s) 1062
NruI TCGCGA 1 cut(s) 618
NspI RCATGY 2 cut(s) 728, 799
PagI TCATGA 1 cut(s) 985
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 3 cut(s) 70, 248, 620
PflMI CCANNNNNTGG 1 cut(s) 1095
PkrI GCNGC 3 cut(s) 132, 466, 710
PpuMI RGGWCCY 2 cut(s) 29, 1073
Psp5II RGGWCCY 2 cut(s) 29, 1073
Psp6I CCWGG 3 cut(s) 123, 490, 510
PspGI CCWGG 3 cut(s) 123, 490, 510
PspN4I GGNNCC 5 cut(s) 60, 122, 129, 1041, 1074
PspPI GGNCC 5 cut(s) 29, 38, 317, 1040, 1073
PspPPI RGGWCCY 2 cut(s) 29, 1073
PsuI RGATCY 1 cut(s) 76
RruI TCGCGA 1 cut(s) 618
RsaI GTAC 4 cut(s) 227, 403, 423, 432
RsaNI GTAC 4 cut(s) 226, 402, 422, 431
RseI CAYNNNNRTG 1 cut(s) 289
SaqAI TTAA 2 cut(s) 306, 497
SatI GCNGC 3 cut(s) 131, 465, 709
Sau3AI GATC 5 cut(s) 76, 363, 601, 934, 1057
Sau96I GGNCC 5 cut(s) 29, 38, 317, 1040, 1073
ScrFI CCNGG 3 cut(s) 125, 492, 512
SduI GDGCHC 1 cut(s) 860
SexAI ACCWGGT 1 cut(s) 123
SfaNI GCATC 3 cut(s) 493, 559, 952
SfcI CTRYAG 1 cut(s) 1077
SinI GGWCC 4 cut(s) 29, 38, 317, 1073
SmiMI CAYNNNNRTG 1 cut(s) 289
SpeI ACTAGT 2 cut(s) 404, 899
Sse9I AATT 8 cut(s) 49, 155, 175, 229, 415, 447, 498, 849
SsiI CCGC 5 cut(s) 131, 754, 881, 926, 1123
SspMI CTAG 2 cut(s) 405, 900
StyD4I CCNGG 3 cut(s) 123, 490, 510
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 2 cut(s) 311, 1068
TaiI ACGT 1 cut(s) 1120
TaqI TCGA 1 cut(s) 169
TaqII GACCGA 2 cut(s) 128, 1050
TasI AATT 8 cut(s) 49, 155, 175, 229, 415, 447, 498, 849
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 3 cut(s) 70, 248, 620
Tru1I TTAA 2 cut(s) 306, 497
Tru9I TTAA 2 cut(s) 306, 497
TscAI CASTG 4 cut(s) 316, 558, 865, 877
TseFI GTSAC 1 cut(s) 1062
TseI GCWGC 2 cut(s) 464, 708
Tsp45I GTSAC 1 cut(s) 1062
TspDTI ATGAA 3 cut(s) 59, 204, 921
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 4 cut(s) 316, 558, 865, 877
Van91I CCANNNNNTGG 1 cut(s) 1095
VneI GTGCAC 1 cut(s) 856
VpaK11BI GGWCC 4 cut(s) 29, 38, 317, 1073
XapI RAATTY 3 cut(s) 49, 175, 415
XceI RCATGY 2 cut(s) 728, 799
XmiI GTMKAC 2 cut(s) 12, 280
XspI CTAG 2 cut(s) 405, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.