Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012331

Physical Location & Seq

Genomic Coordinates Reverse (-)

24713519 .. 24719260

Gene Structure 5742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0240700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGCAGCACAAACCAACCTTAACATCACCACAGACCGGTCTGCTCTTCTTGCTCTAAAAGACCATATCACCAGTGACCCTCACAACATGATCCTCACCAATTGGTCAACCACTACCCCTATTTGCAACTGGGTTGGCGTCATTTGTGGTGCACGCCATCATCGAGTCGCAGAGTTGAACCTCTCTTACTTTGGTCTCGCGGGCACCATTCCTCCTGAGCTAGGCAACTTATCATTGCTTGTTGATCTGGACATCCAAAATAACAGTTTCCAGGGTACCTTGCCTGACGAGTTGACTCGCCTGCGCCGGTTGAAGTTCATTAACTTGGGATACAACAAGTTTATGGGAGTGATACCGTCATGGTTTGGGTCCTTATCCAAACTTCAAGGATTCATGTTGTTTGGTAATCAATTTGCAAGTTCTATACCAGCTGCCATCTTCAACTTATCTGCTCTTCAAATATTTAATCTGAGTCATAACCAACTCTCAGGTCCTATACCATATGAGATTGGTTATCTTCCAAATTTAGAGAATTTGGCGCTCGGTGAAAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATCTCCACAATAACAAGATTAGGTCTAGAGGTCAATCAGCTTTCAGGAAGCCTCCCAGCAGACATGGGCCTTGCGCTTCCAAAACTAGAAATGATTGCAGCAGGAGGGAATCACCTCAGTGGAGTAATCCCCAAATCCATCTCCAATGCTTCTGAGCTTCGGCTTCTAGACCTGGGAAATAACTCTTTTTCTGGATTTATTCCAACCACTCTGTGCCTCTTGACAAACTTTGAATGGGTCAGTTTCTTCGACAATAATTTGACCATTGATGCCTCTACTCCAGAAGTTAATATTTTTTCTTGTCTGCCAAATCTTAGAAATTTGAGGGCATTATTCTTCTCAAGCAATCCATTAAATGCAAAGCTTTCGATTCCCTTCAGTAATTTCTCTGCATCACTTCAAAAACTTTATTTAACAAATTGCAGCTTGAGAGGTAACATCCCCAGTGATATTGGGAATTTGAGTAGCTTGATAGATTTAAGCCTGGGAGACAATCAATTGAGCGAGCCAATTCCAAGCTCAATGGGAAGACTACATAATCTTCAATGTTTGTGTGTGTCTTATAACACATTGCAAGGATACATTCCAGATGAGCTTTGTCAACTAGAAAACTTAAGTATTTTGAATTTGAATGGGAATCAACTCTCTGGTTCTGTACCTTCCTGCTTGGGTAATCTAACAGCATCTCTAAGATATCTATACTTGAAGTCCAATTTATTGAATTCCACCATACCATTTACCTTGTGGGGACTTACAGATATCTTGAAACTACACTTGTCATCCAATTCTCTCATTGGACCTCTATCAGGTGGTGTTGGTAATTTGAAAGTTGCGATATCCTTGGATGTATCATACAACCAATTATCTGGTAGTATACCAAGCAGCGTTGGGAGTTTATTGAATTTGGTCAATCTCTCCTTAGCACATAATAATCTAGAAGGCCTTATTCCTAGTTCCTTTGCTACCTGTTTAAGCTTAGAAGGATTGGATTTATCTCAGAACAGTCTCTCTGGAGTGATTCCAAAGTCTCTTGAAGCACTCTCATATCTCAAGTATCTGAATCTATCTTTCAACATAGTCCAAGGAGAAATTCCAACCGGCGGTCCATTCAAAAACTTCTCTGCTGAATCATTTGTTTCAAACCGTGGACTTTGTGGTGCATCCCAATTCCAAGTTCCACCATGCAAAAGAAAAACTAGCATAGCTATCTTGAAGTATGTTATTCCGGGGATCTTGTCAGCAATGCTTCTAGCGACCTCCATGATTTGGTTGTTGATGTTGCGTAGAAAAAAGAATGTGAAAGCAGCAGCAAATTCTGTCTTCACGCCTCAAGATTTCTGGAGAAGAGTTTCATACCAAGAGCTCCTAAGTGCGACAGATGGATTCAATGAAAGCAACTTACTTGGTACTGGGGGTTTTGGCTCAGTGTATAAAGGAACATTGTCAGATGGGATGGACATTGCGATAAAGGTTTTCAATTTGGAGTTGGAAGACTCATTTTCAAGTTTTCAGGTTGAATGTGAAATGCTAAGTAATGTTCATCACCGAAATCTTGTCAAAGTCATCAGTTGTTGCAGTCAAGTGGATTTCAAAGGTCTTGTATTGAATTATATGCCTAATGGGAGCCTTGAGAAGTGGTTGTATTCTCAGAATTCTTCTTTGAACATAATGCAGAGGTTGGATATAATGATAGATGTTGCATCGGCATTGGAGTACCTTCACCATGATTATGAAGTACCTATTGTCCATTGTGATTTGAAGCCAAGCAACATCCTACTAGATGATGATATGGTTGCACATGTTGCTGATTTTGGTATTGCAAAACTTTTGGGTGGAGGAGATTCTATGACTCAAACCATGACCTTGGCCACAATTGGGTATATGGCTCCAGAGTATGGAATGCAAGGAATAGTGACCAGAAGAGGTGATGTGTATAGTTTTGGTATTGTAGTGATGGAAACATTCACAAGAAGGAAGCCAACCGATGAGATCTTCACTGGGGAAATGAGACTGAATCAATGGGTTGCAAATTTCCTAGTTGCAGATGCGATAGTTGAAGTTGTGGATGCTAGTTTACTTGGAAGCGAGGAGGCTCATGACTTCGTGAGCAAGAGGGAGTGCTTATCATCCATTATGAGATTAGCTGTCGCTTGTTCAGCAGAATCACCGGAAGAGAGGATAAACATGCAAGAGGCTGTAGCCATGCTTAAAACAATCAAGATCAAGTTTTCAAATGATTGCTGCAAGAGGTGTGGTGGTGAATCGTCGTCCTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003682 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009649 GO:0010224 GO:0019899 GO:0042752 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0050789 GO:0050896 GO:0051020 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko04120 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map04120 map05166

Pfam Domains

Protein Families

RCC1

Protein Analysis

955

Amino Acids

104.17

Weight (kDa)

5.58

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	11 - 49	6.6e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	60 - 157	3.5e-06	Leucine-rich repeat region
LRR_14	PF23598	290 - 432	2.4e-09	Leucine-rich repeat region
LRR_8	PF13855	497 - 554	2.2e-10	Leucine rich repeat
Pkinase	PF00069	659 - 930	6.5e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	662 - 930	5.9e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63860
fragaria_vesca	FvH4_1g25000 FvH4_1g25000
malus_domestica	MD15G1136000.v1.1
prunus_persica	Prupe.4G277200_v2.0.a1
pyrus_communis	pycom15g12260
rosa_chinensis	RchiOBHm_Chr2g0122641
rosa_laevigata	RLG00000018697
rosa_multiflora	Rmu_sc0003133.1_g000023
rosa_roxburghii	Rroxscaffold_2G00121410
rosa_rugosa	Rorug02G0240700 Rorug02G0240800 Rorug02G0240900 Rorug02G0241000
rosa_samantha	Rh2AG298800 Rh2BG307700 Rh2CG285800 Rh2DG322400
rosa_wichuraiana	Rw2G023810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1152
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	203, 275
AccB7I	CCANNNNNTGG	2 cut(s)	1854, 2483
AccI	GTMKAC	1 cut(s)	1462
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	200, 1689
AclWI	GGATC	2 cut(s)	85, 1826
AcoI	YGGCCR	2 cut(s)	562, 2454
AcuI	CTGAAG	1 cut(s)	949
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	801
AfaI	GTAC	5 cut(s)	277, 1245, 1996, 2303, 2325
AfiI	CCNNNNNNNGG	7 cut(s)	36, 221, 1394, 1688, 1854, 2463, 2483
AflII	CTTAAG	1 cut(s)	1201
AflIII	ACRYGT	1 cut(s)	2386
AgeI	ACCGGT	1 cut(s)	36
AjnI	CCWGG	3 cut(s)	270, 759, 1071
AjuI	GAANNNNNNNTTGG	4 cut(s)	1662, 1694, 1746, 1778
AleI	CACNNNNGTG	1 cut(s)	705
Alw21I	GWGCWC	2 cut(s)	154, 1953
Alw26I	GTCTC	5 cut(s)	200, 1071, 1598, 1620, 2590
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	85, 1826
AoxI	GGCC	4 cut(s)	562, 655, 1528, 2454
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	8 cut(s)	5, 431, 686, 1011, 1470, 1892, 1895, 2829
AsiGI	ACCGGT	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	1936
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	3 cut(s)	306, 541, 664
AspS9I	GGNCC	5 cut(s)	369, 491, 655, 1385, 1691
AsuC2I	CCSGG	1 cut(s)	1815
AvaII	GGWCC	4 cut(s)	369, 491, 1385, 1691
BaeGI	GKGCMC	2 cut(s)	154, 206
BalI	TGGCCA	2 cut(s)	564, 2456
BanI	GGYRCC	2 cut(s)	203, 275
BanII	GRGCYC	1 cut(s)	1953
BbsI	GAAGAC	3 cut(s)	1123, 1900, 2085
Bbv12I	GWGCWC	2 cut(s)	154, 1953
BbvI	GCAGC	8 cut(s)	17, 418, 698, 1023, 1482, 1904, 1907, 2816
BccI	CCATC	8 cut(s)	165, 443, 580, 734, 1961, 2030, 2035, 2536
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BciT130I	CCWGG	3 cut(s)	272, 761, 1073
BciVI	GTATCC	2 cut(s)	323, 1160
BcnI	CCSGG	1 cut(s)	1815
BcoDI	GTCTC	5 cut(s)	200, 1071, 1598, 1620, 2590
BfmI	CTRYAG	1 cut(s)	2784
BfoI	RGCGCY	1 cut(s)	542
BfrI	CTTAAG	1 cut(s)	1201
BfuI	GTATCC	2 cut(s)	323, 1160
BglII	AGATCT	1 cut(s)	2577
BisI	GCNGC	8 cut(s)	6, 432, 687, 1012, 1471, 1893, 1896, 2830
BlsI	GCNGC	8 cut(s)	7, 433, 688, 1013, 1472, 1894, 1897, 2831
Bme1390I	CCNGG	4 cut(s)	272, 761, 1073, 1815
Bme18I	GGWCC	4 cut(s)	369, 491, 1385, 1691
BmgT120I	GGNCC	5 cut(s)	369, 491, 655, 1385, 1691
BmiI	GGNNCC	5 cut(s)	205, 277, 370, 2213, 2475
BmrFI	CCNGG	4 cut(s)	272, 761, 1073, 1815
BmrI	ACTGGG	4 cut(s)	139, 1026, 2007, 2595
BmsI	GCATC	7 cut(s)	847, 989, 1280, 1757, 2297, 2623, 2644
BmuI	ACTGGG	4 cut(s)	139, 1026, 2007, 2595
BpiI	GAAGAC	3 cut(s)	1123, 1900, 2085
BpmI	CTGGAG	4 cut(s)	852, 1620, 1948, 2460
Bpu10I	CCTNAGC	2 cut(s)	216, 1507
BpuEI	CTTGAG	5 cut(s)	913, 1036, 1622, 1902, 2237
BpuMI	CCSGG	1 cut(s)	1815
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	8 cut(s)	271, 760, 1072, 1428, 1669, 1732, 1814, 2451
BsaWI	WCCGGW	2 cut(s)	36, 2755
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 221, 1394, 1688, 1854, 2463, 2483
Bse118I	RCCGGY	3 cut(s)	36, 306, 1685
Bse1I	ACTGG	5 cut(s)	72, 134, 1032, 2002, 2590
Bse3DI	GCAATG	4 cut(s)	233, 1157, 1836, 2046
BseBI	CCWGG	3 cut(s)	272, 761, 1073
BseDI	CCNNGG	8 cut(s)	271, 760, 1072, 1428, 1669, 1732, 1814, 2451
BseLI	CCNNNNNNNGG	7 cut(s)	36, 221, 1394, 1688, 1854, 2463, 2483
BseMI	GCAATG	4 cut(s)	233, 1157, 1836, 2046
BseMII	CTCAG	8 cut(s)	207, 461, 501, 718, 732, 1598, 2025, 2249
BseNI	ACTGG	5 cut(s)	72, 134, 1032, 2002, 2590
BseRI	GAGGAG	2 cut(s)	2439, 2690
BseSI	GKGCMC	2 cut(s)	154, 206
BseXI	GCAGC	8 cut(s)	17, 418, 698, 1023, 1482, 1904, 1907, 2816
BseYI	CCCAGC	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	4 cut(s)	564, 657, 1530, 2456
BshNI	GGYRCC	2 cut(s)	203, 275
BshTI	ACCGGT	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	154, 1953
BsiSI	CCGG	5 cut(s)	37, 307, 1686, 1814, 2756
BslFI	GGGAC	1 cut(s)	1350
BslI	CCNNNNNNNGG	7 cut(s)	36, 221, 1394, 1688, 1854, 2463, 2483
BsmAI	GTCTC	5 cut(s)	200, 1071, 1598, 1620, 2590
BsmFI	GGGAC	1 cut(s)	1350
BsmI	GAATGC	1 cut(s)	2493
BsnI	GGCC	4 cut(s)	564, 657, 1530, 2456
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	154, 206, 1953
Bsp143I	GATC	5 cut(s)	90, 244, 1818, 2577, 2808
BspACI	CCGC	2 cut(s)	200, 1689
BspANI	GGCC	4 cut(s)	564, 657, 1530, 2456
BspCNI	CTCAG	8 cut(s)	208, 462, 500, 717, 733, 1597, 2024, 2248
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	2683
BspLI	GGNNCC	5 cut(s)	205, 277, 370, 2213, 2475
BspPI	GGATC	2 cut(s)	85, 1826
BspQI	GCTCTTC	2 cut(s)	51, 459
BspT107I	GGYRCC	2 cut(s)	203, 275
BspTI	CTTAAG	1 cut(s)	1201
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	4 cut(s)	233, 1157, 1836, 2046
BsrFI	RCCGGY	3 cut(s)	36, 306, 1685
BsrI	ACTGG	5 cut(s)	72, 134, 1032, 2002, 2590
BssAI	RCCGGY	3 cut(s)	36, 306, 1685
BssECI	CCNNGG	8 cut(s)	271, 760, 1072, 1428, 1669, 1732, 1814, 2451
BssMI	GATC	5 cut(s)	90, 244, 1818, 2577, 2808
BssNAI	GTATAC	1 cut(s)	1463
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	1428, 1669, 2451
Bst1107I	GTATAC	1 cut(s)	1463
Bst2UI	CCWGG	3 cut(s)	272, 761, 1073
Bst4CI	ACNGT	4 cut(s)	266, 357, 1592, 1733
Bst6I	CTCTTC	5 cut(s)	51, 459, 1927, 2503, 2754
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	1201
BstAPI	GCANNNNNTGC	1 cut(s)	2390
BstC8I	GCNNGC	4 cut(s)	154, 202, 302, 1094
BstDSI	CCRYGG	1 cut(s)	1732
BstENI	CCTNNNNNAGG	2 cut(s)	219, 1392
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	3 cut(s)	306, 541, 664
BstKTI	GATC	5 cut(s)	93, 247, 1821, 2580, 2811
BstMAI	GTCTC	5 cut(s)	200, 1071, 1598, 1620, 2590
BstMBI	GATC	5 cut(s)	90, 244, 1818, 2577, 2808
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 2390, 2744
BstNI	CCWGG	3 cut(s)	272, 761, 1073
BstNSI	RCATGY	2 cut(s)	2390, 2776
BstSCI	CCNGG	4 cut(s)	270, 759, 1071, 1813
BstSFI	CTRYAG	1 cut(s)	2784
BstSLI	GKGCMC	2 cut(s)	154, 206
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	8 cut(s)	17, 418, 698, 1023, 1482, 1904, 1907, 2816
BstV2I	GAAGAC	3 cut(s)	1123, 1900, 2085
BstX2I	RGATCY	2 cut(s)	1818, 2577
BstXI	CCANNNNNNTGG	2 cut(s)	1454, 2452
BstYI	RGATCY	2 cut(s)	1818, 2577
BstZ17I	GTATAC	1 cut(s)	1463
BsuI	GTATCC	2 cut(s)	323, 1160
BsuRI	GGCC	4 cut(s)	564, 657, 1530, 2456
BtgI	CCRYGG	1 cut(s)	1732
BtsIMutI	CAGTG	5 cut(s)	79, 712, 1039, 2019, 2583
Cac8I	GCNNGC	4 cut(s)	154, 202, 302, 1094
CciI	TCATGA	1 cut(s)	2683
CfoI	GCGC	3 cut(s)	306, 541, 664
Cfr10I	RCCGGY	3 cut(s)	36, 306, 1685
Cfr13I	GGNCC	5 cut(s)	369, 491, 655, 1385, 1691
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	5 cut(s)	276, 1244, 1995, 2302, 2324
CspAI	ACCGGT	1 cut(s)	36
CspCI	CAANNNNNGTGG	2 cut(s)	2821, 2856
CviQI	GTAC	5 cut(s)	276, 1244, 1995, 2302, 2324
DpnI	GATC	5 cut(s)	92, 246, 1820, 2579, 2810
DpnII	GATC	5 cut(s)	90, 244, 1818, 2577, 2808
DraIII	CACNNNGTG	1 cut(s)	801
EaeI	YGGCCR	2 cut(s)	562, 2454
Eam1104I	CTCTTC	5 cut(s)	51, 459, 1927, 2503, 2754
EarI	CTCTTC	5 cut(s)	51, 459, 1927, 2503, 2754
Ecl136II	GAGCTC	1 cut(s)	1951
Eco130I	CCWWGG	3 cut(s)	1428, 1669, 2451
Eco147I	AGGCCT	1 cut(s)	1530
Eco24I	GRGCYC	1 cut(s)	1953
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	3 cut(s)	1283, 1348, 1425
Eco47I	GGWCC	4 cut(s)	369, 491, 1385, 1691
Eco53kI	GAGCTC	1 cut(s)	1951
Eco57I	CTGAAG	1 cut(s)	949
EcoICRI	GAGCTC	1 cut(s)	1951
EcoNI	CCTNNNNNAGG	2 cut(s)	219, 1392
EcoO109I	RGGNCCY	2 cut(s)	369, 491
EcoRI	GAATTC	2 cut(s)	1309, 2239
EcoRII	CCWGG	3 cut(s)	270, 759, 1071
EcoRV	GATATC	3 cut(s)	1283, 1348, 1425
EcoT14I	CCWWGG	3 cut(s)	1428, 1669, 2451
EcoT38I	GRGCYC	1 cut(s)	1953
ErhI	CCWWGG	3 cut(s)	1428, 1669, 2451
FaqI	GGGAC	1 cut(s)	1350
FauI	CCCGC	1 cut(s)	193
FauNDI	CATATG	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	1462
Fnu4HI	GCNGC	8 cut(s)	6, 432, 687, 1012, 1471, 1893, 1896, 2830
FriOI	GRGCYC	1 cut(s)	1953
Fsp4HI	GCNGC	8 cut(s)	6, 432, 687, 1012, 1471, 1893, 1896, 2830
GlaI	GCGC	3 cut(s)	305, 540, 663
GluI	GCNGC	8 cut(s)	6, 432, 687, 1012, 1471, 1893, 1896, 2830
GsaI	CCCAGC	1 cut(s)	647
GsuI	CTGGAG	4 cut(s)	852, 1620, 1948, 2460
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	4 cut(s)	564, 657, 1530, 2456
HapII	CCGG	5 cut(s)	37, 307, 1686, 1814, 2756
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	3 cut(s)	306, 541, 664
Hin1I	GRCGYC	1 cut(s)	138
Hin6I	GCGC	3 cut(s)	304, 539, 662
HinP1I	GCGC	3 cut(s)	304, 539, 662
HincII	GTYRAC	3 cut(s)	108, 294, 1190
HindII	GTYRAC	3 cut(s)	108, 294, 1190
HindIII	AAGCTT	2 cut(s)	950, 1561
HpaII	CCGG	5 cut(s)	37, 307, 1686, 1814, 2756
Hpy166II	GTNNAC	7 cut(s)	108, 152, 294, 1190, 1463, 1736, 2663
Hpy188I	TCNGA	6 cut(s)	471, 742, 1587, 1647, 2035, 2238
Hpy8I	GTNNAC	7 cut(s)	108, 152, 294, 1190, 1463, 1736, 2663
Hpy99I	CGWCG	1 cut(s)	2857
HpyAV	CCTTC	6 cut(s)	973, 1257, 1520, 1562, 2315, 2553
HpyCH4III	ACNGT	4 cut(s)	266, 357, 1592, 1733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 2390, 2744
Hsp92I	GRCGYC	1 cut(s)	138
HspAI	GCGC	3 cut(s)	304, 539, 662
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	90, 244, 1818, 2577, 2808
LguI	GCTCTTC	2 cut(s)	51, 459
LmnI	GCTCC	3 cut(s)	1956, 2211, 2479
Lsp1109I	GCAGC	8 cut(s)	17, 418, 698, 1023, 1482, 1904, 1907, 2816
LweI	GCATC	7 cut(s)	847, 989, 1280, 1757, 2297, 2623, 2644
MaeIII	GTNAC	3 cut(s)	74, 1022, 2500
MalI	GATC	5 cut(s)	92, 246, 1820, 2579, 2810
MboI	GATC	5 cut(s)	90, 244, 1818, 2577, 2808
MfeI	CAATTG	3 cut(s)	100, 1085, 2460
MflI	RGATCY	2 cut(s)	1818, 2577
MhlI	GDGCHC	3 cut(s)	154, 206, 1953
MlsI	TGGCCA	2 cut(s)	564, 2456
MluNI	TGGCCA	2 cut(s)	564, 2456
MlyI	GAGTC	5 cut(s)	174, 289, 481, 2075, 2431
MmeI	TCCRAC	4 cut(s)	815, 1706, 2055, 2247
Mox20I	TGGCCA	2 cut(s)	564, 2456
MroXI	GAANNNNTTC	1 cut(s)	1936
MscI	TGGCCA	2 cut(s)	564, 2456
MslI	CAYNNNNRTG	2 cut(s)	705, 2316
Msp20I	TGGCCA	2 cut(s)	564, 2456
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	1201
MspI	CCGG	5 cut(s)	37, 307, 1686, 1814, 2756
MspR9I	CCNGG	4 cut(s)	272, 761, 1073, 1815
MunI	CAATTG	3 cut(s)	100, 1085, 2460
Mva1269I	GAATGC	1 cut(s)	2493
MvaI	CCWGG	3 cut(s)	272, 761, 1073
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	50, 2390, 2744
NciI	CCSGG	1 cut(s)	1815
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	5 cut(s)	90, 244, 1818, 2577, 2808
NlaIV	GGNNCC	5 cut(s)	205, 277, 370, 2213, 2475
NmuCI	GTSAC	2 cut(s)	74, 2500
NspI	RCATGY	2 cut(s)	2390, 2776
OliI	CACNNNNGTG	1 cut(s)	705
PagI	TCATGA	1 cut(s)	2683
PceI	AGGCCT	1 cut(s)	1530
PciI	ACATGT	1 cut(s)	2386
PciSI	GCTCTTC	2 cut(s)	51, 459
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PctI	GAATGC	1 cut(s)	2493
PdmI	GAANNNNTTC	1 cut(s)	1936
PflMI	CCANNNNNTGG	2 cut(s)	1854, 2483
PinAI	ACCGGT	1 cut(s)	36
PkrI	GCNGC	8 cut(s)	7, 433, 688, 1013, 1472, 1894, 1897, 2831
PleI	GAGTC	5 cut(s)	173, 289, 480, 2075, 2431
PpsI	GAGTC	5 cut(s)	173, 289, 480, 2075, 2431
PpuMI	RGGWCCY	2 cut(s)	369, 491
PscI	ACATGT	1 cut(s)	2386
PsiI	TTATAA	1 cut(s)	1152
Psp124BI	GAGCTC	1 cut(s)	1953
Psp5II	RGGWCCY	2 cut(s)	369, 491
Psp6I	CCWGG	3 cut(s)	270, 759, 1071
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	3 cut(s)	270, 759, 1071
PspN4I	GGNNCC	5 cut(s)	205, 277, 370, 2213, 2475
PspPI	GGNCC	5 cut(s)	369, 491, 655, 1385, 1691
PspPPI	RGGWCCY	2 cut(s)	369, 491
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
PsuI	RGATCY	2 cut(s)	1818, 2577
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	5 cut(s)	277, 1245, 1996, 2303, 2325
RsaNI	GTAC	5 cut(s)	276, 1244, 1995, 2302, 2324
RseI	CAYNNNNRTG	2 cut(s)	705, 2316
SacI	GAGCTC	1 cut(s)	1953
SapI	GCTCTTC	2 cut(s)	51, 459
SatI	GCNGC	8 cut(s)	6, 432, 687, 1012, 1471, 1893, 1896, 2830
Sau3AI	GATC	5 cut(s)	90, 244, 1818, 2577, 2808
Sau96I	GGNCC	5 cut(s)	369, 491, 655, 1385, 1691
SchI	GAGTC	5 cut(s)	174, 289, 481, 2075, 2431
ScrFI	CCNGG	4 cut(s)	272, 761, 1073, 1815
SduI	GDGCHC	3 cut(s)	154, 206, 1953
SfaNI	GCATC	7 cut(s)	847, 989, 1280, 1757, 2297, 2623, 2644
SfcI	CTRYAG	1 cut(s)	2784
SinI	GGWCC	4 cut(s)	369, 491, 1385, 1691
SmiMI	CAYNNNNRTG	2 cut(s)	705, 2316
SmlI	CTYRAG	6 cut(s)	928, 1015, 1201, 1637, 1917, 2216
SmoI	CTYRAG	6 cut(s)	928, 1015, 1201, 1637, 1917, 2216
SseBI	AGGCCT	1 cut(s)	1530
SsiI	CCGC	2 cut(s)	200, 1689
SspI	AATATT	2 cut(s)	462, 880
SstI	GAGCTC	1 cut(s)	1953
StuI	AGGCCT	1 cut(s)	1530
StyD4I	CCNGG	4 cut(s)	270, 759, 1071, 1813
StyI	CCWWGG	3 cut(s)	1428, 1669, 2451
TaaI	ACNGT	4 cut(s)	266, 357, 1592, 1733
TaqI	TCGA	3 cut(s)	163, 837, 956
TscAI	CASTG	5 cut(s)	79, 712, 1039, 2019, 2590
TseFI	GTSAC	2 cut(s)	74, 2500
TseI	GCWGC	8 cut(s)	5, 431, 686, 1011, 1470, 1892, 1895, 2829
Tsp45I	GTSAC	2 cut(s)	74, 2500
TspDTI	ATGAA	6 cut(s)	307, 382, 1929, 1992, 2117, 2334
TspRI	CASTG	5 cut(s)	79, 712, 1039, 2019, 2590
Van91I	CCANNNNNTGG	2 cut(s)	1854, 2483
Vha464I	CTTAAG	1 cut(s)	1201
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	4 cut(s)	369, 491, 1385, 1691
XagI	CCTNNNNNAGG	2 cut(s)	219, 1392
XbaI	TCTAGA	3 cut(s)	613, 754, 1522
XceI	RCATGY	2 cut(s)	2390, 2776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1329
XmiI	GTMKAC	1 cut(s)	1462
XmnI	GAANNNNTTC	1 cut(s)	1936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.