Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012331

Physical Location & Seq

Genomic Coordinates Forward (+)

24758731 .. 24760451

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0240900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGACAGATGTACCATTTGGTGTTCTTTTGTCCAGAGGATTGGGCTCGTCACTCGTTGCTGCTGTGGCTTGTCACTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGCATTGGCTTAGAGGAAGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTTGTAAGATAAAATCTCTGGGAGTAAAAATGATCCTTTCTGGTGAAGGCTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGAGGAGTTTCACCAAGAAACATGCCAAAAGATTAAAGCTCTTCACCTGTACGACTGTCTGACGGCCAACAAATCGACTTCAGCTTGGGTTGTTGAGGCTCGAGTACCGTTTCTTGACAAAGAATTCATCAAGACTGCTATCGACATTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGGAGAATTGAGAAGTGGGTCTTGCGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAGGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACGGCTTGCATTTACATTTTGGACAGAAATGTTCTCTTTCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003682 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009649 GO:0010224 GO:0019899 GO:0042752 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0050789 GO:0050896 GO:0051020 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko04120 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map04120 map05166

Pfam Domains

Protein Families

RCC1

Protein Analysis

224

Amino Acids

25.49

Weight (kDa)

5.98

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	1 - 49	1.2e-06	Asparagine synthase
Asn_synthase	PF00733	31 - 110	2.2e-19	Asparagine synthase
Asn_synthase	PF00733	108 - 220	1.5e-25	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63860
fragaria_vesca	FvH4_1g25000 FvH4_1g25000
malus_domestica	MD15G1136000.v1.1
prunus_persica	Prupe.4G277200_v2.0.a1
pyrus_communis	pycom15g12260
rosa_chinensis	RchiOBHm_Chr2g0122641
rosa_laevigata	RLG00000018697
rosa_multiflora	Rmu_sc0003133.1_g000023
rosa_roxburghii	Rroxscaffold_2G00121410
rosa_rugosa	Rorug02G0240700 Rorug02G0240800 Rorug02G0240900 Rorug02G0241000
rosa_samantha	Rh2AG298800 Rh2BG307700 Rh2CG285800 Rh2DG322400
rosa_wichuraiana	Rw2G023810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	530
AclWI	GGATC	2 cut(s)	262, 467
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	4 cut(s)	12, 374, 429, 581
AfiI	CCNNNNNNNGG	2 cut(s)	325, 503
AgsI	TTSAA	1 cut(s)	164
AjiI	CACGTC	1 cut(s)	101
AleI	CACNNNNGTG	1 cut(s)	103
AluBI	AGCT	4 cut(s)	95, 362, 407, 621
AluI	AGCT	4 cut(s)	95, 362, 407, 621
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	2 cut(s)	262, 467
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	387, 494
ApeKI	GCWGC	2 cut(s)	59, 95
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	531
AsuHPI	GGTGA	3 cut(s)	290, 326, 359
AvaI	CYCGRG	1 cut(s)	423
BaeI	ACNNNNGTAYC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	46, 82
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	2 cut(s)	402, 646
BclI	TGATCA	2 cut(s)	489, 547
BcoDI	GTCTC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	60, 96
BlsI	GCNGC	2 cut(s)	61, 97
BmeT110I	CYCGRG	1 cut(s)	423
BmgBI	CACGTC	1 cut(s)	101
BmsI	GCATC	1 cut(s)	145
BoxI	GACNNNNGTC	1 cut(s)	203
BsaBI	GATNNNNATC	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 503
Bse8I	GATNNNNATC	1 cut(s)	546
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	325, 503
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	46, 82
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	389, 496
BsiHKCI	CYCGRG	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	325, 503
BsmAI	GTCTC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	389, 496
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	5 cut(s)	267, 472, 489, 499, 547
BspANI	GGCC	2 cut(s)	389, 496
BspCNI	CTCAG	1 cut(s)	299
BspPI	GGATC	2 cut(s)	262, 467
BspQI	GCTCTTC	1 cut(s)	369
BsrGI	TGTACA	1 cut(s)	579
BssMI	GATC	5 cut(s)	267, 472, 489, 499, 547
Bst4CI	ACNGT	3 cut(s)	205, 380, 432
Bst6I	CTCTTC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	214, 635
BstDEI	CTNAG	2 cut(s)	139, 286
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	5 cut(s)	270, 475, 492, 502, 550
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	5 cut(s)	267, 472, 489, 499, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 592
BstNSI	RCATGY	1 cut(s)	348
BstPAI	GACNNNNGTC	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	46, 82
BstXI	CCANNNNNNTGG	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	389, 496
BtrI	CACGTC	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	110, 201
Cac8I	GCNNGC	2 cut(s)	214, 635
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	531
Csp6I	GTAC	4 cut(s)	11, 373, 428, 580
CviAII	CATG	1 cut(s)	345
CviQI	GTAC	4 cut(s)	11, 373, 428, 580
DdeI	CTNAG	2 cut(s)	139, 286
DpnI	GATC	5 cut(s)	269, 474, 491, 501, 549
DpnII	GATC	5 cut(s)	267, 472, 489, 499, 547
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	1 cut(s)	348
FaiI	YATR	8 cut(s)	123, 152, 180, 190, 192, 233, 346, 559
FalI	AAGNNNNNCTT	4 cut(s)	509, 541, 560, 592
FatI	CATG	1 cut(s)	344
FauNDI	CATATG	1 cut(s)	190
FbaI	TGATCA	2 cut(s)	489, 547
Fnu4HI	GCNGC	2 cut(s)	60, 96
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	60, 96
FspI	TGCGCA	1 cut(s)	530
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	60, 96
HaeIII	GGCC	2 cut(s)	389, 496
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HphI	GGTGA	3 cut(s)	290, 326, 359
Hpy188I	TCNGA	5 cut(s)	91, 209, 289, 384, 552
Hpy188III	TCNNGA	4 cut(s)	33, 437, 454, 476
HpyAV	CCTTC	3 cut(s)	140, 275, 583
HpyCH4III	ACNGT	3 cut(s)	205, 380, 432
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	98, 132, 158, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 592
HpyF3I	CTNAG	2 cut(s)	139, 286
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	348
HspAI	GCGC	1 cut(s)	529
Ksp22I	TGATCA	2 cut(s)	489, 547
Kzo9I	GATC	5 cut(s)	267, 472, 489, 499, 547
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	2 cut(s)	46, 82
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	5 cut(s)	48, 71, 111, 196, 614
MalI	GATC	5 cut(s)	269, 474, 491, 501, 549
MboI	GATC	5 cut(s)	267, 472, 489, 499, 547
MboII	GAAGA	2 cut(s)	176, 356
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	4 cut(s)	116, 446, 510, 670
MnlI	CCTC	4 cut(s)	29, 136, 319, 412
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	2 cut(s)	103, 221
MspA1I	CMGCKG	1 cut(s)	621
MwoI	GCNNNNNNNGC	2 cut(s)	65, 592
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	5 cut(s)	267, 472, 489, 499, 547
NlaIII	CATG	1 cut(s)	348
NmuCI	GTSAC	4 cut(s)	48, 71, 111, 196
NsbI	TGCGCA	1 cut(s)	530
NspI	RCATGY	1 cut(s)	348
OliI	CACNNNNGTG	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	423
PceI	AGGCCT	1 cut(s)	496
PciSI	GCTCTTC	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	61, 97
PshAI	GACNNNNGTC	1 cut(s)	203
PspXI	VCTCGAGB	1 cut(s)	423
PstNI	CAGNNNCTG	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	621
RsaI	GTAC	4 cut(s)	12, 374, 429, 581
RsaNI	GTAC	4 cut(s)	11, 373, 428, 580
RseI	CAYNNNNRTG	2 cut(s)	103, 221
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	60, 96
Sau3AI	GATC	5 cut(s)	267, 472, 489, 499, 547
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	7 cut(s)	97, 103, 128, 364, 372, 409, 623
SfaNI	GCATC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	103, 221
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	4 cut(s)	116, 446, 510, 670
SseBI	AGGCCT	1 cut(s)	496
StuI	AGGCCT	1 cut(s)	496
TaaI	ACNGT	3 cut(s)	205, 380, 432
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	398, 424, 465
TasI	AATT	4 cut(s)	116, 446, 510, 670
TatI	WGTACW	1 cut(s)	579
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	110, 208
TseFI	GTSAC	4 cut(s)	48, 71, 111, 196
TseI	GCWGC	2 cut(s)	59, 95
Tsp45I	GTSAC	4 cut(s)	48, 71, 111, 196
TspDTI	ATGAA	2 cut(s)	306, 439
TspRI	CASTG	2 cut(s)	110, 208
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	1 cut(s)	348
XhoI	CTCGAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.