Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004655

Physical Location & Seq

Genomic Coordinates Forward (+)

69281020 .. 69286342

Gene Structure 5323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

ATGCCGGCCCTCGGAATGCTAGGGTTTCAGGGGCTACTGTTTGGGGTCGTTTTGGCGGCGTTCTTTGTGATTCGCCACAAGTGGAGGAATGCGGTGGCGAAGAAGGAGGAGATCATGAGGCTTGTGGCTATGGCTTCCGAGGAGGCCGCAATGGCCGAGTTTCAGGCCACCACGGCTATGTATGGTGCTGCTGCTCCTCCGGTGGCGGCGCCGGTGACCAGTCCGTTTCACTGTGCTGTGTGTTATTCCCAAACCACCATGCGGTGCTCGAAATGCAAGAGTGTTAGATACTGTTCTGGGAAGTGTCAAATCATTCACTGGAGGCAAGGTCATAAGGACGAATGCCGACCTTCGATTGGCACCATGGAGGTGCAACACAACAGTGATTTAGAAGGGGAAGCGGTGCTTCATCGTGGTGGAATAGGTGCACATACAAGTGCAACCTCACCCAGTACTATATCATGGGATGGCTTCACTTCATCTGGTACTGGAGCTGACACCTCTTCGGGTGAGATTCTTAATCATGTCAGTGTTGACAGAGCAGAGAAACCTCTTTTTGATGGTACTGCTCCTGATCTACTTGGAAATATGTCAGAGTATACTAATTTGGTAAATTGTCGAGATAACTTTTCACCTGCAAATAAGTTAGTTAAGATGAAATCCAGTCACAATGATAAAGAGGTAGAATCTGAATCAAAATTGGCTAAAGCTAAGATAGACATGTCTGCTGATGCTCAGCCTGCAAATTTTGCTGGTAAAAAGCCAACTAGAAGGGGTACTTCAACAGAAAAGGTAGTTACTGATGCCTCTAAGTCCAAGAGATTGTCAACTAGTGACAGGGAAGATGAGCGTAAAGAAGGACCTTTATCAAATAGTGCTTCTAATGGCCGGCCATCTTCAACCACTGGAGGGTTACTGGATTCCAGTTATAGATCTGAAAAAGTTGACGGTTATCATGCCTTGCCTGCCAAAATTGGTAGCATCCCAAGCTTGCCGCAAAATGCTTGTAATGGTCTGAAGACATCCATGAAGAAAGTTGTGCAGCAGTTTAAATCCTCAAAACAGCTGAAATCCAATCTCACAGGTCCTGAAAATGGAATTGCTGGAAAGTTCAAGGTAATATTTCCATATGAGCTATTTGTGAAACTGTACTCCTACAACAATGTGGATCTTTGCCCATTTGGCCTGACAAATTGTGGGAACAGCTGTTATGCTAATGCTGTGCTCCAGTGTTTAGCATTTACTCAGCCTCTTACTTCTTATCTTCTTCAAGGACTCCATTCTAGAGCATGTCAAAAAAAGGACTGGTGCTTTATATGTGAATTTGAAATTCTGCTCCTGAAGGCAAGGGAAGGGAAGTCTTCACTGTCCCCGATTAGGATCTTATCCAAAATACATAAAATTGGAAGCCATCTTGGTCATGGGAAGGAAGAAGATGCTCATGAATTTTTGAGGTATGCAGTTGATACCATGCAATCTGTTTGCCTCAAGGAAGCTGGGGCTATTGGTCCTTTGGCAGAACAAACAACTCTAGTAGGCATGACCTTTGGAGGTCACCTTCGATCCAAGATAAAGTGCATGAAGTGCCTTGGGAAAACTGAGCAATTTGAGCAGATGATGGATCTTACTGTCGAAATTGATGGCGCAATTGGAACTCTGGAAGAGGCTCTTGCACAATTTACTGCTACTGAAACTTTGGACGGAGATAATAGGTTCCATTGTAACAGGTGTAAATCTTATGAGAAAGCCAGAAAGAAACTTACAGTTCTAGAGGCACCAAATATTCTTACAATAGTGTTGAAGCGATTTCAGTCTCGAAACTTCGAGAAGCTGGATAAGTCAGTACGTTTTCCAGAGGTTCTCAGCTTGTCACCATACATGGACAGAACAAGTGATAAATCTCCTTTGTACAATCTGTATGCTGTCGTTGTTCACTTGGATATTATGAATGCTGCATATTCAGGCCATTATATATGTTATGTAAAGAATAGTCAAGGCAACTGGTTCAAGATTGATGACAGCTCGGTTGAACCCGTGGAATTAAAGAGGGTCTTATCTGAAGGCGCATACATGCTTCTTTATGCAAGGCGCTCTCCGCGACCCCCATCCTTGGTAGGAAGTAACGCCCTTTCTCATGCTGGGACATCCAGTAGAAGGAACTCGGAAGCAGTCCCTTCAAGCCTTACCAAGTCCAAGTTGAGATACACGGTTCCAAGTATGAATAGTTCTGCAGCACAACCAAAGTCTAGTAGAGAGTGGTATAGGATGAGTTTTGATGGTTCAAGCAATCAATCATTAGATCCAGATGATTGGAGATCTCATTCCATGTACAGAGTTCCTGCTATGGATTCATTAAGTGAGAGTTCATCGATTTTCAGCTCCTCGGATGCAAGTTCTTGTAGCACCGTGAGCACCAAGGACTCCTCCAGCAATGAAGATCTCTCTGATTACATATTTGGTCAAGTAGGAACAAATCCATACAGCCAATTCGGGCGTTCATCAGACGTGGTTGCACCTTCCTTGTTTCCAAACTTTGATGTAGATATGAAAGGCCGTACAGAGGACTCAGAAGGCGGAGGAAACTCCACAATTTTGTGTAGTGACAGAAGTAGACATCGCAGGAAGTCAACCTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

879

Amino Acids

96.42

Weight (kDa)

8.69

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	78 - 115	1.6e-08	MYND finger
UCH	PF00443	394 - 694	5.3e-55	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	395 - 676	7.9e-21	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65450 AT5G65450
fragaria_vesca	FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830
malus_domestica	MD01G1038200.v1.1
prunus_persica	Prupe.6G197100_v2.0.a1 Prupe.6G197100_v2.0.a1 Prupe.6G197100_v2.0.a1 Prupe.6G197100_v2.0.a1 Prupe.6G197100_v2.0.a1
pyrus_communis	pycom01g06620
rosa_chinensis	RchiOBHm_Chr2g0111521
rosa_laevigata	RLG00000017896
rosa_multiflora	Rmu_co8461347.1_g000001 Rmu_sc0005791.1_g000010
rosa_roxburghii	Rroxscaffold_2G00132250
rosa_rugosa	Rorug02G0174700 Rorug02G0174800 Rorug02G0174900
rosa_samantha	Rh2AG227500 Rh2BG239400 Rh2CG231100 Rh2DG235600
rosa_wichuraiana	Rw2G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	643
AccB1I	GGYRCC	3 cut(s)	208, 359, 1774
AccI	GTMKAC	2 cut(s)	599, 2611
AccII	CGCG	1 cut(s)	2098
AciI	CCGC	9 cut(s)	56, 92, 147, 206, 262, 401, 995, 2096, 2574
AclWI	GGATC	5 cut(s)	1176, 1388, 1557, 1629, 2294
AcoI	YGGCCR	3 cut(s)	153, 886, 890
AcsI	RAATTY	4 cut(s)	745, 1322, 1329, 1445
AcuI	CTGAAG	3 cut(s)	1037, 1361, 2079
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	9 cut(s)	454, 487, 565, 778, 1151, 1845, 1910, 2330, 2557
AfiI	CCNNNNNNNGG	9 cut(s)	11, 261, 356, 909, 1094, 1377, 2110, 2154, 2560
AflIII	ACRYGT	1 cut(s)	720
AhlI	ACTAGT	1 cut(s)	830
AjiI	CACGTC	1 cut(s)	2506
AleI	CACNNNNGTG	1 cut(s)	381
Alw21I	GWGCWC	4 cut(s)	269, 430, 1227, 2414
Alw26I	GTCTC	1 cut(s)	1818
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	5 cut(s)	1176, 1388, 1557, 1629, 2294
AlwNI	CAGNNNCTG	1 cut(s)	1088
AoxI	GGCC	9 cut(s)	6, 144, 153, 165, 886, 890, 1183, 1963, 2551
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	5 cut(s)	188, 191, 1042, 1952, 2231
ApoI	RAATTY	4 cut(s)	745, 1322, 1329, 1445
AspLEI	GCGC	4 cut(s)	211, 1646, 2066, 2091
AspS9I	GGNCC	4 cut(s)	7, 860, 1085, 1508
AsuHPI	GGTGA	6 cut(s)	226, 438, 521, 624, 1547, 1863
AvaII	GGWCC	3 cut(s)	860, 1085, 1508
BaeGI	GKGCMC	1 cut(s)	430
BanI	GGYRCC	3 cut(s)	208, 359, 1774
BbsI	GAAGAC	2 cut(s)	1025, 1353
Bbv12I	GWGCWC	4 cut(s)	269, 430, 1227, 2414
BbvI	GCAGC	5 cut(s)	175, 178, 1054, 1939, 2243
BccI	CCATC	8 cut(s)	461, 554, 901, 1419, 1612, 1634, 2113, 2270
BceAI	ACGGC	2 cut(s)	189, 2538
BcoDI	GTCTC	1 cut(s)	1818
BcuI	ACTAGT	1 cut(s)	830
BfaI	CTAG	7 cut(s)	20, 768, 831, 1284, 1532, 1769, 2247
BfmI	CTRYAG	1 cut(s)	2229
BfoI	RGCGCY	2 cut(s)	212, 2092
BfuAI	ACCTGC	1 cut(s)	643
BglI	GCCNNNNNGGC	3 cut(s)	152, 173, 1182
BglII	AGATCT	3 cut(s)	932, 2315, 2437
BisI	GCNGC	9 cut(s)	57, 147, 189, 192, 207, 995, 1043, 1953, 2232
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	9 cut(s)	58, 148, 190, 193, 208, 996, 1044, 1954, 2233
BmcAI	AGTACT	1 cut(s)	454
Bme18I	GGWCC	3 cut(s)	860, 1085, 1508
BmgBI	CACGTC	1 cut(s)	2506
BmgT120I	GGNCC	4 cut(s)	7, 860, 1085, 1508
BmiI	GGNNCC	5 cut(s)	210, 361, 1715, 1776, 2211
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	5 cut(s)	721, 793, 990, 1426, 2377
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	1025, 1353
BpmI	CTGGAG	5 cut(s)	340, 510, 927, 1211, 2410
Bpu1102I	GCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	1472
Bsa29I	ATCGAT	1 cut(s)	2369
BsaBI	GATNNNNATC	1 cut(s)	1379
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	9 cut(s)	10, 138, 171, 363, 1588, 2034, 2109, 2382, 2415
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	9 cut(s)	11, 261, 356, 909, 1094, 1377, 2110, 2154, 2560
Bse118I	RCCGGY	3 cut(s)	4, 211, 888
Bse3DI	GCAATG	2 cut(s)	156, 2437
Bse8I	GATNNNNATC	1 cut(s)	1379
BseCI	ATCGAT	1 cut(s)	2369
BseDI	CCNNGG	9 cut(s)	10, 138, 171, 363, 1588, 2034, 2109, 2382, 2415
BseGI	GGATG	7 cut(s)	472, 981, 1022, 2105, 2144, 2271, 2392
BseJI	GATNNNNATC	1 cut(s)	1379
BseLI	CCNNNNNNNGG	9 cut(s)	11, 261, 356, 909, 1094, 1377, 2110, 2154, 2560
BseMI	GCAATG	2 cut(s)	156, 2437
BseMII	CTCAG	5 cut(s)	749, 1259, 1590, 1876, 2580
BseRI	GAGGAG	5 cut(s)	122, 155, 186, 2371, 2413
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	5 cut(s)	175, 178, 1054, 1939, 2243
BseYI	CCCAGC	2 cut(s)	1496, 2138
BsgI	GTGCAG	1 cut(s)	1061
Bsh1236I	CGCG	1 cut(s)	2098
BshFI	GGCC	9 cut(s)	8, 146, 155, 167, 888, 892, 1185, 1965, 2553
BshNI	GGYRCC	3 cut(s)	208, 359, 1774
BshVI	ATCGAT	1 cut(s)	2369
BsiHKAI	GWGCWC	4 cut(s)	269, 430, 1227, 2414
BsiSI	CCGG	4 cut(s)	5, 200, 212, 889
BslFI	GGGAC	3 cut(s)	1354, 2155, 2156
BslI	CCNNNNNNNGG	9 cut(s)	11, 261, 356, 909, 1094, 1377, 2110, 2154, 2560
BsmAI	GTCTC	1 cut(s)	1818
BsmFI	GGGAC	3 cut(s)	1354, 2155, 2156
BsmI	GAATGC	4 cut(s)	21, 94, 347, 1954
BsnI	GGCC	9 cut(s)	8, 146, 155, 167, 888, 892, 1185, 1965, 2553
Bsp1286I	GDGCHC	4 cut(s)	269, 430, 1227, 2414
Bsp1407I	TGTACA	2 cut(s)	1908, 2328
Bsp1720I	GCTNAGC	1 cut(s)	735
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	9 cut(s)	56, 92, 147, 206, 262, 401, 995, 2096, 2574
BspANI	GGCC	9 cut(s)	8, 146, 155, 167, 888, 892, 1185, 1965, 2553
BspCNI	CTCAG	5 cut(s)	748, 1258, 1591, 1875, 2579
BspDI	ATCGAT	1 cut(s)	2369
BspFNI	CGCG	1 cut(s)	2098
BspHI	TCATGA	2 cut(s)	114, 1441
BspLI	GGNNCC	5 cut(s)	210, 361, 1715, 1776, 2211
BspMAI	CTGCAG	1 cut(s)	2233
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	5 cut(s)	1176, 1388, 1557, 1629, 2294
BspT107I	GGYRCC	3 cut(s)	208, 359, 1774
BsrDI	GCAATG	2 cut(s)	156, 2437
BsrFI	RCCGGY	3 cut(s)	4, 211, 888
BsrGI	TGTACA	2 cut(s)	1908, 2328
BssAI	RCCGGY	3 cut(s)	4, 211, 888
BssECI	CCNNGG	9 cut(s)	10, 138, 171, 363, 1588, 2034, 2109, 2382, 2415
BssNAI	GTATAC	1 cut(s)	600
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	4 cut(s)	363, 1588, 2109, 2415
Bst1107I	GTATAC	1 cut(s)	600
Bst6I	CTCTTC	2 cut(s)	508, 1656
BstACI	GRCGYC	1 cut(s)	209
BstAPI	GCANNNNNTGC	2 cut(s)	749, 1584
BstAUI	TGTACA	2 cut(s)	1908, 2328
BstC8I	GCNNGC	5 cut(s)	6, 741, 890, 966, 992
BstDEI	CTNAG	8 cut(s)	711, 735, 810, 1245, 1599, 1862, 2566, 2632
BstDSI	CCRYGG	3 cut(s)	171, 363, 2034
BstEII	GGTNACC	2 cut(s)	214, 1553
BstF5I	GGATG	7 cut(s)	472, 981, 1022, 2105, 2144, 2271, 2392
BstFNI	CGCG	1 cut(s)	2098
BstH2I	RGCGCY	2 cut(s)	212, 2092
BstHHI	GCGC	4 cut(s)	211, 1646, 2066, 2091
BstMAI	GTCTC	1 cut(s)	1818
BstNSI	RCATGY	3 cut(s)	724, 1293, 2074
BstPI	GGTNACC	2 cut(s)	214, 1553
BstSFI	CTRYAG	1 cut(s)	2229
BstSLI	GKGCMC	1 cut(s)	430
BstUI	CGCG	1 cut(s)	2098
BstV1I	GCAGC	5 cut(s)	175, 178, 1054, 1939, 2243
BstV2I	GAAGAC	2 cut(s)	1025, 1353
BstX2I	RGATCY	7 cut(s)	932, 1168, 1380, 1621, 2299, 2315, 2437
BstXI	CCANNNNNNTGG	1 cut(s)	2310
BstYI	RGATCY	7 cut(s)	932, 1168, 1380, 1621, 2299, 2315, 2437
BstZ17I	GTATAC	1 cut(s)	600
Bsu15I	ATCGAT	1 cut(s)	2369
BsuRI	GGCC	9 cut(s)	8, 146, 155, 167, 888, 892, 1185, 1965, 2553
BsuTUI	ATCGAT	1 cut(s)	2369
BtgI	CCRYGG	3 cut(s)	171, 363, 2034
BtgZI	GCGATG	1 cut(s)	2600
BtrI	CACGTC	1 cut(s)	2506
BtsCI	GGATG	7 cut(s)	472, 981, 1022, 2105, 2144, 2271, 2392
BtsIMutI	CAGTG	7 cut(s)	229, 316, 388, 535, 903, 1235, 1364
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	5 cut(s)	6, 741, 890, 966, 992
CaiI	CAGNNNCTG	1 cut(s)	1088
CciI	TCATGA	2 cut(s)	114, 1441
CfoI	GCGC	4 cut(s)	211, 1646, 2066, 2091
Cfr10I	RCCGGY	3 cut(s)	4, 211, 888
Cfr13I	GGNCC	4 cut(s)	7, 860, 1085, 1508
ClaI	ATCGAT	1 cut(s)	2369
Csp6I	GTAC	9 cut(s)	453, 486, 564, 777, 1150, 1844, 1909, 2329, 2556
CviQI	GTAC	9 cut(s)	453, 486, 564, 777, 1150, 1844, 1909, 2329, 2556
DdeI	CTNAG	8 cut(s)	711, 735, 810, 1245, 1599, 1862, 2566, 2632
DinI	GGCGCC	1 cut(s)	210
DraI	TTTAAA	1 cut(s)	1051
EaeI	YGGCCR	3 cut(s)	153, 886, 890
Eam1104I	CTCTTC	2 cut(s)	508, 1656
EarI	CTCTTC	2 cut(s)	508, 1656
EciI	GGCGGA	1 cut(s)	2589
Eco130I	CCWWGG	4 cut(s)	363, 1588, 2109, 2415
Eco47I	GGWCC	3 cut(s)	860, 1085, 1508
Eco57I	CTGAAG	3 cut(s)	1037, 1361, 2079
Eco91I	GGTNACC	2 cut(s)	214, 1553
EcoO109I	RGGNCCY	2 cut(s)	860, 1085
EcoO65I	GGTNACC	2 cut(s)	214, 1553
EcoT14I	CCWWGG	4 cut(s)	363, 1588, 2109, 2415
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
ErhI	CCWWGG	4 cut(s)	363, 1588, 2109, 2415
FalI	AAGNNNNNCTT	8 cut(s)	390, 422, 763, 795, 1653, 1685, 2036, 2068
FaqI	GGGAC	3 cut(s)	1354, 2155, 2156
FauNDI	CATATG	1 cut(s)	1129
FblI	GTMKAC	2 cut(s)	599, 2611
Fnu4HI	GCNGC	9 cut(s)	57, 147, 189, 192, 207, 995, 1043, 1953, 2232
FokI	GGATG	7 cut(s)	479, 968, 1009, 2092, 2131, 2278, 2399
FseI	GGCCGGCC	1 cut(s)	892
Fsp4HI	GCNGC	9 cut(s)	57, 147, 189, 192, 207, 995, 1043, 1953, 2232
FspBI	CTAG	7 cut(s)	20, 768, 831, 1284, 1532, 1769, 2247
GlaI	GCGC	4 cut(s)	210, 1645, 2065, 2090
GluI	GCNGC	9 cut(s)	57, 147, 189, 192, 207, 995, 1043, 1953, 2232
GsaI	CCCAGC	2 cut(s)	1500, 2142
GsuI	CTGGAG	5 cut(s)	340, 510, 927, 1211, 2410
HaeII	RGCGCY	2 cut(s)	212, 2092
HaeIII	GGCC	9 cut(s)	8, 146, 155, 167, 888, 892, 1185, 1965, 2553
HapII	CCGG	4 cut(s)	5, 200, 212, 889
HhaI	GCGC	4 cut(s)	211, 1646, 2066, 2091
Hin1I	GRCGYC	1 cut(s)	209
Hin6I	GCGC	4 cut(s)	209, 1644, 2064, 2089
HinP1I	GCGC	4 cut(s)	209, 1644, 2064, 2089
HincII	GTYRAC	4 cut(s)	535, 828, 946, 2628
HindII	GTYRAC	4 cut(s)	535, 828, 946, 2628
HindIII	AAGCTT	1 cut(s)	988
HinfI	GANTC	9 cut(s)	70, 514, 686, 692, 920, 1275, 2348, 2420, 2564
HpaII	CCGG	4 cut(s)	5, 200, 212, 889
HphI	GGTGA	6 cut(s)	226, 438, 521, 624, 1547, 1863
Hpy166II	GTNNAC	8 cut(s)	428, 535, 600, 828, 946, 1933, 2612, 2628
Hpy8I	GTNNAC	8 cut(s)	428, 535, 600, 828, 946, 1933, 2612, 2628
HpyCH4IV	ACGT	2 cut(s)	1846, 2505
HpyF3I	CTNAG	8 cut(s)	711, 735, 810, 1245, 1599, 1862, 2566, 2632
HpySE526I	ACGT	2 cut(s)	1846, 2505
Hsp92I	GRCGYC	1 cut(s)	209
HspAI	GCGC	4 cut(s)	209, 1644, 2064, 2089
KasI	GGCGCC	1 cut(s)	208
KroI	GCCGGC	2 cut(s)	4, 888
KroNI	GCCGGC	2 cut(s)	6, 890
LmnI	GCTCC	6 cut(s)	199, 491, 574, 1230, 1341, 2384
Lsp1109I	GCAGC	5 cut(s)	175, 178, 1054, 1939, 2243
LweI	GCATC	5 cut(s)	721, 793, 990, 1426, 2377
MaeI	CTAG	7 cut(s)	20, 768, 831, 1284, 1532, 1769, 2247
MaeII	ACGT	2 cut(s)	1846, 2505
MfeI	CAATTG	1 cut(s)	1647
MflI	RGATCY	7 cut(s)	932, 1168, 1380, 1621, 2299, 2315, 2437
MhlI	GDGCHC	4 cut(s)	269, 430, 1227, 2414
Mly113I	GGCGCC	1 cut(s)	209
MlyI	GAGTC	3 cut(s)	1269, 2414, 2558
MroNI	GCCGGC	2 cut(s)	4, 888
MseI	TTAA	6 cut(s)	519, 651, 1050, 2042, 2354, 2638
MslI	CAYNNNNRTG	6 cut(s)	176, 368, 381, 414, 435, 528
MspA1I	CMGCKG	2 cut(s)	1066, 1206
MspI	CCGG	4 cut(s)	5, 200, 212, 889
MunI	CAATTG	1 cut(s)	1647
Mva1269I	GAATGC	4 cut(s)	21, 94, 347, 1954
MvnI	CGCG	1 cut(s)	2098
NaeI	GCCGGC	2 cut(s)	6, 890
NarI	GGCGCC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	1129
NgoMIV	GCCGGC	2 cut(s)	4, 888
NlaIV	GGNNCC	5 cut(s)	210, 361, 1715, 1776, 2211
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	6 cut(s)	214, 665, 833, 1553, 1869, 2600
NspI	RCATGY	3 cut(s)	724, 1293, 2074
OliI	CACNNNNGTG	1 cut(s)	381
PagI	TCATGA	2 cut(s)	114, 1441
PaqCI	CACCTGC	1 cut(s)	643
PciI	ACATGT	1 cut(s)	720
PctI	GAATGC	4 cut(s)	21, 94, 347, 1954
PdiI	GCCGGC	2 cut(s)	6, 890
PfeI	GAWTC	6 cut(s)	70, 514, 686, 692, 920, 2348
PkrI	GCNGC	9 cut(s)	58, 148, 190, 193, 208, 996, 1044, 1954, 2233
PleI	GAGTC	3 cut(s)	1269, 2414, 2558
PluTI	GGCGCC	1 cut(s)	212
PpsI	GAGTC	3 cut(s)	1269, 2414, 2558
PpuMI	RGGWCCY	2 cut(s)	860, 1085
PscI	ACATGT	1 cut(s)	720
Psp5II	RGGWCCY	2 cut(s)	860, 1085
PspEI	GGTNACC	2 cut(s)	214, 1553
PspFI	CCCAGC	2 cut(s)	1496, 2138
PspN4I	GGNNCC	5 cut(s)	210, 361, 1715, 1776, 2211
PspPI	GGNCC	4 cut(s)	7, 860, 1085, 1508
PspPPI	RGGWCCY	2 cut(s)	860, 1085
PsrI	GAACNNNNNNTAC	2 cut(s)	2209, 2241
PstI	CTGCAG	1 cut(s)	2233
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	7 cut(s)	932, 1168, 1380, 1621, 2299, 2315, 2437
PvuII	CAGCTG	2 cut(s)	1066, 1206
RigI	GGCCGGCC	1 cut(s)	892
RsaI	GTAC	9 cut(s)	454, 487, 565, 778, 1151, 1845, 1910, 2330, 2557
RsaNI	GTAC	9 cut(s)	453, 486, 564, 777, 1150, 1844, 1909, 2329, 2556
RseI	CAYNNNNRTG	6 cut(s)	176, 368, 381, 414, 435, 528
SaqAI	TTAA	6 cut(s)	519, 651, 1050, 2042, 2354, 2638
SatI	GCNGC	9 cut(s)	57, 147, 189, 192, 207, 995, 1043, 1953, 2232
Sau96I	GGNCC	4 cut(s)	7, 860, 1085, 1508
ScaI	AGTACT	1 cut(s)	454
SchI	GAGTC	3 cut(s)	1269, 2414, 2558
SduI	GDGCHC	4 cut(s)	269, 430, 1227, 2414
SfaNI	GCATC	5 cut(s)	721, 793, 990, 1426, 2377
SfcI	CTRYAG	1 cut(s)	2229
SfiI	GGCCNNNNNGGCC	1 cut(s)	152
SfoI	GGCGCC	1 cut(s)	210
SgrAI	CRCCGGYG	1 cut(s)	211
SinI	GGWCC	3 cut(s)	860, 1085, 1508
SmiMI	CAYNNNNRTG	6 cut(s)	176, 368, 381, 414, 435, 528
SmlI	CTYRAG	1 cut(s)	1487
SmoI	CTYRAG	1 cut(s)	1487
SpeI	ACTAGT	1 cut(s)	830
SsiI	CCGC	9 cut(s)	56, 92, 147, 206, 262, 401, 995, 2096, 2574
SspDI	GGCGCC	1 cut(s)	208
SspI	AATATT	2 cut(s)	1122, 1783
SspMI	CTAG	7 cut(s)	20, 768, 831, 1284, 1532, 1769, 2247
StyI	CCWWGG	4 cut(s)	363, 1588, 2109, 2415
TaiI	ACGT	2 cut(s)	1849, 2508
TaqI	TCGA	8 cut(s)	269, 353, 619, 1561, 1632, 1816, 1824, 2369
TatI	WGTACW	4 cut(s)	452, 1149, 1908, 2328
TauI	GCSGC	4 cut(s)	59, 149, 209, 997
TfiI	GAWTC	6 cut(s)	70, 514, 686, 692, 920, 2348
Tru1I	TTAA	6 cut(s)	519, 651, 1050, 2042, 2354, 2638
Tru9I	TTAA	6 cut(s)	519, 651, 1050, 2042, 2354, 2638
TscAI	CASTG	7 cut(s)	236, 323, 388, 535, 910, 1235, 1371
TseFI	GTSAC	6 cut(s)	214, 665, 833, 1553, 1869, 2600
TseI	GCWGC	5 cut(s)	188, 191, 1042, 1952, 2231
Tsp45I	GTSAC	6 cut(s)	214, 665, 833, 1553, 1869, 2600
TspGWI	ACGGA	2 cut(s)	213, 1716
TspRI	CASTG	7 cut(s)	236, 323, 388, 535, 910, 1235, 1371
VneI	GTGCAC	1 cut(s)	426
VpaK11BI	GGWCC	3 cut(s)	860, 1085, 1508
XapI	RAATTY	4 cut(s)	745, 1322, 1329, 1445
XbaI	TCTAGA	2 cut(s)	1283, 1768
XceI	RCATGY	3 cut(s)	724, 1293, 2074
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1418
XmiI	GTMKAC	2 cut(s)	599, 2611
XspI	CTAG	7 cut(s)	20, 768, 831, 1284, 1532, 1769, 2247
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.