Rorug02G0174800

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004655
Physical Location & Seq
Reverse (-)
16010533 .. 16011649
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0174800.1

Sequence Viewer

Length: 348 bp
ATGGTGGAGAGCAAGACTGTACACTCGCCTTTGGTGACTTACGCTTCCATGCTTTCACTGCTTACTTTCTGCCCTCCATTTGTCATTATTAAAGGCTTGAAGTTATGGTATACAATGGTACATGCTGATGGCTCTCTTTTTAAAACTTGGGATTACTTGAAACAAAATGGGCTGCAAAGTTTATTGACATATGGCCAAGACCTACAGCCATTGCCTGGAAAATCATCGCATGTTATGGCAAATTTTGAGGCTGCACTTCAGCTGCCTTTACCTGGAAAAAAGGTTGAAGGACCAATATCTCCGGCTGGGTATCGGCCTGTCTACAAGGCAAATGGTATGGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-MYND

Protein Analysis

115

Amino Acids

12.61

Weight (kDa)

9.27

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 215
AccI GTMKAC 2 cut(s) 110, 321
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 2 cut(s) 21, 120
AfiI CCNNNNNNNGG 2 cut(s) 215, 272
AgsI TTSAA 3 cut(s) 100, 160, 287
AjnI CCWGG 2 cut(s) 214, 271
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
AoxI GGCC 2 cut(s) 193, 314
ApeKI GCWGC 4 cut(s) 172, 251, 262, 341
ApoI RAATTY 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 195
BbvI GCAGC 3 cut(s) 159, 238, 249
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 2 cut(s) 216, 273
BfmI CTRYAG 1 cut(s) 203
BisI GCNGC 4 cut(s) 173, 252, 263, 342
BlsI GCNGC 4 cut(s) 174, 253, 264, 343
Bme1390I CCNGG 2 cut(s) 216, 273
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmrFI CCNGG 2 cut(s) 216, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 272
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 2 cut(s) 216, 273
BseLI CCNNNNNNNGG 2 cut(s) 215, 272
BseMI GCAATG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 159, 238, 249
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 2 cut(s) 195, 316
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 215, 272
BsnI GGCC 2 cut(s) 195, 316
Bsp1407I TGTACA 1 cut(s) 19
BspANI GGCC 2 cut(s) 195, 316
BsrDI GCAATG 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 19
BssNAI GTATAC 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 216, 273
Bst4CI ACNGT 1 cut(s) 19
BstAUI TGTACA 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 2 cut(s) 216, 273
BstNSI RCATGY 2 cut(s) 125, 233
BstSCI CCNGG 2 cut(s) 214, 271
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 3 cut(s) 159, 238, 249
BstZ17I GTATAC 1 cut(s) 111
BsuRI GGCC 2 cut(s) 195, 316
BtgZI GCGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 20, 119
CviAII CATG 3 cut(s) 49, 122, 230
CviJI RGCY 9 cut(s) 96, 132, 172, 195, 208, 251, 262, 305, 316
CviKI_1 RGCY 9 cut(s) 96, 132, 172, 195, 208, 251, 262, 305, 316
CviQI GTAC 2 cut(s) 20, 119
DraI TTTAAA 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 214, 271
FaeI CATG 3 cut(s) 52, 125, 233
FatI CATG 3 cut(s) 48, 121, 229
FauNDI CATATG 1 cut(s) 190
FblI GTMKAC 2 cut(s) 110, 321
Fnu4HI GCNGC 4 cut(s) 173, 252, 263, 342
Fsp4HI GCNGC 4 cut(s) 173, 252, 263, 342
GluI GCNGC 4 cut(s) 173, 252, 263, 342
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 2 cut(s) 195, 316
HapII CCGG 1 cut(s) 302
Hin1II CATG 3 cut(s) 52, 125, 233
HpaII CCGG 1 cut(s) 302
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 3 cut(s) 22, 111, 322
Hpy8I GTNNAC 3 cut(s) 22, 111, 322
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 175, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
Hsp92II CATG 3 cut(s) 52, 125, 233
LpnPI CCDG 7 cut(s) 201, 228, 258, 285, 291, 315, 330
Lsp1109I GCAGC 3 cut(s) 159, 238, 249
MaeIII GTNAC 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 1 cut(s) 241
MluNI TGGCCA 1 cut(s) 195
MnlI CCTC 2 cut(s) 84, 241
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 2 cut(s) 90, 141
MslI CAYNNNNRTG 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 216, 273
MvaI CCWGG 2 cut(s) 216, 273
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeI CATATG 1 cut(s) 190
NlaIII CATG 3 cut(s) 52, 125, 233
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 2 cut(s) 125, 233
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 4 cut(s) 174, 253, 264, 343
Psp6I CCWGG 2 cut(s) 214, 271
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 214, 271
PspPI GGNCC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 2 cut(s) 21, 120
RsaNI GTAC 2 cut(s) 20, 119
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 2 cut(s) 90, 141
SatI GCNGC 4 cut(s) 173, 252, 263, 342
Sau96I GGNCC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 216, 273
SetI ASST 4 cut(s) 204, 264, 274, 285
SfcI CTRYAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 214, 271
TaaI ACNGT 1 cut(s) 19
TasI AATT 1 cut(s) 241
TatI WGTACW 1 cut(s) 19
Tru1I TTAA 2 cut(s) 90, 141
Tru9I TTAA 2 cut(s) 90, 141
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 4 cut(s) 172, 251, 262, 341
Tsp45I GTSAC 1 cut(s) 34
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 241
XceI RCATGY 2 cut(s) 125, 233
XmiI GTMKAC 2 cut(s) 110, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.