Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004655

Physical Location & Seq

Genomic Coordinates Reverse (-)

23874282 .. 23879630

Gene Structure 5349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGCCGGCCCTCGGAATGCTAGGGTTTCAGGGGCTACTGTTTGGGGTCGTTTTGGCGGCGTTCTTTGTGATTCGCCACAAGTGGAGGAATGCGGTTGCAAAGAAGGAGGAGATCATGAGGCTTGTGGCTATGGCTTCCGAGGAGGCCGCAATGGCCGAGTTTCAGGCCACCACGGCTATGTATGCTGCTGCTCCTCCGGTGGTGGTGGCGCCGATGACCAGTCCGTTTCACTGTGCTGTATGTTATTCCCAAACCACCATGCGGTGCTCGAAATGCAAGAGTGTTAGATACTGTTCTGGGAAGTGTCAAATCATTCACTGGAGACAAGGTCACAAGGACGAATGCCGACCTTCGATTGGCACCATGGAGGTGCAACACAACAGTGATTTAGACGGGGAAGCGGTGCTTCATCGTGGTGGAATAGGTGCACATACCAGTGCAACCTCACCCAGTACTATATCATGGGATGGCTTCACTTCATCTGGTACTGGAGCTGACACCTCTTCGGGTGAGATTCTTAATCATGTCAGTGTTGACAGAGCAGAGAAACCTCTTTTTGATGGTACTGCTCCTGATCTACTTGGAAATATGTCAGAGTATACTAATTTGGTAAATTTTCGAGATAACTTTTCACCTGCAAATAAGTTAGTTAAGATGAATTCCAGTCACAATGATAAAGAGGTAGAATCTGAATCAAAATTGGCCAAAGCTAAGATAGACATGTCTGCTGATGCTCAGCCTGCAAATTTTGCTGGTAAAAAGCCAACTAGAAGGGGTACTTCAATAGAAAAGGTAGTTACTGATGCCTTTAAGTCCAAGAGGTTGTCAACTAGTGACAGGGAAGATGAGCGTAAAGAGGGACCTTTATCAAATAGTGGTTCTAATGGCCGGCCATCTTCAACCACTGGAGGGTTACTGGATTCCAGTTATAGATCTGAAAAAGTTGACGGTTATCATGCCTTGCCTGCCAAAATTGGTAGTACCCCAAGCTTGCCGCAAAATGCTTGTAATGGTCTGAAGACATCCATGAAGAAAGTTGTGCAGCAGTTTAAATCCTCAAAACAGCTGAAATCCAATCTCTCAGGTCCTGAAAATGGGATTGCTGGAAAGTTCAAGGTAATATTTCCATATGAGCTATTTGTGAAACTGTACTCCTACAACAATGTGGATCTTTGCCCATTTGGCCTGACAAATTGTGGGAACAGCTGTTATGCTAATGCTGTGCTACAGTGTTTAGCATTTACTCAGCCTCTTACTTCGTATCTTCTTCAAGGACTCCATTCTAGAGCATGTCAAAAAAAGGACTGGTGTTTTATATGTGAATTTGAAATTCTGCTCCTGAAGGCAAGGGAAGGGAAGTCTTCACTGTCCCCGATTAGGATCTTATCCAGAATACATAAAATTGGAAGCCATCTTGGTCATGGGAAGGAAGAAGATGCTCATGAGTTTTTGAGGTATGCAGTTGATACGATGCAATCTGTTTGCCTCAAGGAAGCTGGGGCTATTGGTCCTTTGGCAGAACAAACAACTCTAGTAGGCATGACCTTTGGAGGTCACCTTCGATCCAAGATAAAGTGCATGAAGTGCCTCGGGAAAACTGAGCAATTTGAGCGGATGATGGATCTTACTGTCGAAATTGATGGGGCAATTGGAACTCTGGAAGAGGCTCTTGCACAATTTACTGCTACTGAAACTTTGGACGGAGATAATAGGTTCCATTGTAACAGGTGTAAATCTTATGAGAAAGCCAGAAAGAAACTTACAGTTCTAGAGGCACCAAATATTCTTACAATAGTGTTGAAGCGATTTCAGTCTCGAAACTTCGAGAAGCTGGATAAGTCAGTACGTTTTCCAGAGGTTCTCAACTTGTCACCATACATGGACAGAACAAGTGATAAATCTCCTTTGTACAATCTTTATGCCGTCATTGTTCACCTGGATATTATGAATGCTGCATATTCAGGCCATTATATATGTTATGTAAAGAATAGTCAAGGCAACTGGTTCAAGATTAATGACAGCTCGGTATGTTCTCTGTACATTTCTGATTTTGCCGTTGGGCTCAACCTTATTTCTTTGTTTTGTGGGAAAACTTTCGCACTGTTCGAATCCATAGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

707

Amino Acids

77.83

Weight (kDa)

8.74

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	78 - 115	1.2e-08	MYND finger
UCH	PF00443	394 - 678	2.3e-50	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	395 - 676	3.8e-21	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65450 AT5G65450
fragaria_vesca	FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830 FvH4_1g19830
malus_domestica	MD01G1038200.v1.1
prunus_persica	Prupe.6G197100_v2.0.a1 Prupe.6G197100_v2.0.a1 Prupe.6G197100_v2.0.a1 Prupe.6G197100_v2.0.a1 Prupe.6G197100_v2.0.a1
pyrus_communis	pycom01g06620
rosa_chinensis	RchiOBHm_Chr2g0111521
rosa_laevigata	RLG00000017896
rosa_multiflora	Rmu_co8461347.1_g000001 Rmu_sc0005791.1_g000010
rosa_roxburghii	Rroxscaffold_2G00132250
rosa_rugosa	Rorug02G0174700 Rorug02G0174800 Rorug02G0174900
rosa_samantha	Rh2AG227500 Rh2BG239400 Rh2CG231100 Rh2DG235600
rosa_wichuraiana	Rw2G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	643
AccB1I	GGYRCC	3 cut(s)	208, 359, 1774
AccBSI	CCGCTC	1 cut(s)	1612
AccI	GTMKAC	1 cut(s)	599
AciI	CCGC	7 cut(s)	56, 92, 147, 262, 401, 995, 1612
AclWI	GGATC	4 cut(s)	1176, 1388, 1557, 1629
AcoI	YGGCCR	4 cut(s)	153, 702, 886, 890
AcsI	RAATTY	5 cut(s)	613, 658, 745, 1322, 1329
AcuI	CTGAAG	2 cut(s)	1037, 1361
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	9 cut(s)	454, 487, 565, 778, 982, 1151, 1845, 1910, 2039
AfiI	CCNNNNNNNGG	6 cut(s)	11, 261, 356, 909, 1094, 1377
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	7 cut(s)	783, 900, 1114, 1271, 1328, 1801, 2008
AhlI	ACTAGT	1 cut(s)	830
AjnI	CCWGG	1 cut(s)	1935
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	9 cut(s)	494, 710, 990, 1066, 1135, 1206, 1496, 1831, 2022
AluI	AGCT	9 cut(s)	494, 710, 990, 1066, 1135, 1206, 1496, 1831, 2022
Alw21I	GWGCWC	2 cut(s)	269, 430
Alw26I	GTCTC	2 cut(s)	316, 1818
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	4 cut(s)	1176, 1388, 1557, 1629
AlwNI	CAGNNNCTG	1 cut(s)	1088
Ama87I	CYCGRG	1 cut(s)	1589
AoxI	GGCC	9 cut(s)	6, 144, 153, 165, 702, 886, 890, 1183, 1963
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	4 cut(s)	185, 188, 1042, 1952
ApoI	RAATTY	5 cut(s)	613, 658, 745, 1322, 1329
AseI	ATTAAT	1 cut(s)	2013
Asp700I	GAANNNNTTC	1 cut(s)	2093
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	4 cut(s)	7, 860, 1085, 1508
AsuHPI	GGTGA	6 cut(s)	438, 521, 624, 1547, 1863, 1925
AsuII	TTCGAA	1 cut(s)	2106
AvaI	CYCGRG	1 cut(s)	1589
AvaII	GGWCC	3 cut(s)	860, 1085, 1508
BaeGI	GKGCMC	1 cut(s)	430
BalI	TGGCCA	1 cut(s)	704
BanI	GGYRCC	3 cut(s)	208, 359, 1774
BanII	GRGCYC	1 cut(s)	2064
BbsI	GAAGAC	2 cut(s)	1025, 1353
Bbv12I	GWGCWC	2 cut(s)	269, 430
BbvI	GCAGC	4 cut(s)	172, 175, 1054, 1939
BccI	CCATC	6 cut(s)	461, 554, 901, 1419, 1612, 1634
BceAI	ACGGC	3 cut(s)	189, 1907, 2039
BciT130I	CCWGG	1 cut(s)	1937
BcoDI	GTCTC	2 cut(s)	316, 1818
BcuI	ACTAGT	1 cut(s)	830
BfaI	CTAG	6 cut(s)	20, 768, 831, 1284, 1532, 1769
BfmI	CTRYAG	1 cut(s)	1226
BfoI	RGCGCY	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	643
BglI	GCCNNNNNGGC	3 cut(s)	152, 173, 1182
BglII	AGATCT	1 cut(s)	932
BisI	GCNGC	7 cut(s)	57, 147, 186, 189, 995, 1043, 1953
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	7 cut(s)	58, 148, 187, 190, 996, 1044, 1954
BmcAI	AGTACT	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	1937
Bme18I	GGWCC	3 cut(s)	860, 1085, 1508
BmeT110I	CYCGRG	1 cut(s)	1589
BmgT120I	GGNCC	4 cut(s)	7, 860, 1085, 1508
BmiI	GGNNCC	5 cut(s)	210, 361, 861, 1715, 1776
BmrFI	CCNGG	1 cut(s)	1937
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	4 cut(s)	721, 793, 1426, 1461
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	1025, 1353
BpmI	CTGGAG	3 cut(s)	340, 510, 927
Bpu1102I	GCTNAGC	1 cut(s)	735
Bpu14I	TTCGAA	1 cut(s)	2106
BpuEI	CTTGAG	1 cut(s)	1472
BsaBI	GATNNNNATC	1 cut(s)	1379
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	5 cut(s)	10, 138, 171, 363, 1588
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 261, 356, 909, 1094, 1377
Bse118I	RCCGGY	2 cut(s)	4, 888
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	1379
BseBI	CCWGG	1 cut(s)	1937
BseDI	CCNNGG	5 cut(s)	10, 138, 171, 363, 1588
BseGI	GGATG	3 cut(s)	472, 1022, 1620
BseJI	GATNNNNATC	1 cut(s)	1379
BseLI	CCNNNNNNNGG	6 cut(s)	11, 261, 356, 909, 1094, 1377
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	4 cut(s)	749, 1095, 1259, 1590
BseRI	GAGGAG	3 cut(s)	122, 155, 183
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	4 cut(s)	172, 175, 1054, 1939
BseYI	CCCAGC	1 cut(s)	1496
BsgI	GTGCAG	1 cut(s)	1061
BshFI	GGCC	9 cut(s)	8, 146, 155, 167, 704, 888, 892, 1185, 1965
BshNI	GGYRCC	3 cut(s)	208, 359, 1774
BsiHKAI	GWGCWC	2 cut(s)	269, 430
BsiHKCI	CYCGRG	1 cut(s)	1589
BsiSI	CCGG	3 cut(s)	5, 197, 889
BslFI	GGGAC	2 cut(s)	873, 1354
BslI	CCNNNNNNNGG	6 cut(s)	11, 261, 356, 909, 1094, 1377
BsmAI	GTCTC	2 cut(s)	316, 1818
BsmFI	GGGAC	2 cut(s)	873, 1354
BsmI	GAATGC	4 cut(s)	21, 94, 347, 1954
BsnI	GGCC	9 cut(s)	8, 146, 155, 167, 704, 888, 892, 1185, 1965
BsoBI	CYCGRG	1 cut(s)	1589
Bsp119I	TTCGAA	1 cut(s)	2106
Bsp1286I	GDGCHC	3 cut(s)	269, 430, 2064
Bsp1407I	TGTACA	2 cut(s)	1908, 2037
Bsp143I	GATC	7 cut(s)	111, 574, 932, 1168, 1380, 1562, 1621
Bsp1720I	GCTNAGC	1 cut(s)	735
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	7 cut(s)	56, 92, 147, 262, 401, 995, 1612
BspANI	GGCC	9 cut(s)	8, 146, 155, 167, 704, 888, 892, 1185, 1965
BspCNI	CTCAG	4 cut(s)	748, 1094, 1258, 1591
BspHI	TCATGA	2 cut(s)	114, 1441
BspLI	GGNNCC	5 cut(s)	210, 361, 861, 1715, 1776
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	4 cut(s)	1176, 1388, 1557, 1629
BspT104I	TTCGAA	1 cut(s)	2106
BspT107I	GGYRCC	3 cut(s)	208, 359, 1774
BsrBI	CCGCTC	1 cut(s)	1612
BsrDI	GCAATG	1 cut(s)	156
BsrFI	RCCGGY	2 cut(s)	4, 888
BsrGI	TGTACA	2 cut(s)	1908, 2037
BssAI	RCCGGY	2 cut(s)	4, 888
BssECI	CCNNGG	5 cut(s)	10, 138, 171, 363, 1588
BssMI	GATC	7 cut(s)	111, 574, 932, 1168, 1380, 1562, 1621
BssNAI	GTATAC	1 cut(s)	600
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	363
Bst1107I	GTATAC	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	1937
Bst6I	CTCTTC	2 cut(s)	508, 1656
BstACI	GRCGYC	1 cut(s)	209
BstAPI	GCANNNNNTGC	2 cut(s)	749, 1584
BstAUI	TGTACA	2 cut(s)	1908, 2037
BstBI	TTCGAA	1 cut(s)	2106
BstC8I	GCNNGC	5 cut(s)	6, 741, 890, 966, 992
BstDEI	CTNAG	5 cut(s)	711, 735, 1081, 1245, 1599
BstDSI	CCRYGG	2 cut(s)	171, 363
BstEII	GGTNACC	1 cut(s)	1553
BstF5I	GGATG	3 cut(s)	472, 1022, 1620
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	7 cut(s)	114, 577, 935, 1171, 1383, 1565, 1624
BstMAI	GTCTC	2 cut(s)	316, 1818
BstMBI	GATC	7 cut(s)	111, 574, 932, 1168, 1380, 1562, 1621
BstNI	CCWGG	1 cut(s)	1937
BstNSI	RCATGY	2 cut(s)	724, 1293
BstPI	GGTNACC	1 cut(s)	1553
BstSCI	CCNGG	1 cut(s)	1935
BstSFI	CTRYAG	1 cut(s)	1226
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	4 cut(s)	172, 175, 1054, 1939
BstV2I	GAAGAC	2 cut(s)	1025, 1353
BstX2I	RGATCY	4 cut(s)	932, 1168, 1380, 1621
BstYI	RGATCY	4 cut(s)	932, 1168, 1380, 1621
BstZ17I	GTATAC	1 cut(s)	600
BsuRI	GGCC	9 cut(s)	8, 146, 155, 167, 704, 888, 892, 1185, 1965
BtgI	CCRYGG	2 cut(s)	171, 363
BtsCI	GGATG	3 cut(s)	472, 1022, 1620
BtsIMutI	CAGTG	9 cut(s)	229, 316, 388, 442, 535, 903, 1235, 1364, 2099
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	5 cut(s)	6, 741, 890, 966, 992
CaiI	CAGNNNCTG	1 cut(s)	1088
CciI	TCATGA	2 cut(s)	114, 1441
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	2 cut(s)	4, 888
Cfr13I	GGNCC	4 cut(s)	7, 860, 1085, 1508
Csp6I	GTAC	9 cut(s)	453, 486, 564, 777, 981, 1150, 1844, 1909, 2038
CviQI	GTAC	9 cut(s)	453, 486, 564, 777, 981, 1150, 1844, 1909, 2038
DdeI	CTNAG	5 cut(s)	711, 735, 1081, 1245, 1599
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	7 cut(s)	113, 576, 934, 1170, 1382, 1564, 1623
DpnII	GATC	7 cut(s)	111, 574, 932, 1168, 1380, 1562, 1621
DraI	TTTAAA	1 cut(s)	1051
EaeI	YGGCCR	4 cut(s)	153, 702, 886, 890
Eam1104I	CTCTTC	2 cut(s)	508, 1656
EarI	CTCTTC	2 cut(s)	508, 1656
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	2064
Eco47I	GGWCC	3 cut(s)	860, 1085, 1508
Eco57I	CTGAAG	2 cut(s)	1037, 1361
Eco88I	CYCGRG	1 cut(s)	1589
Eco91I	GGTNACC	1 cut(s)	1553
EcoO109I	RGGNCCY	2 cut(s)	860, 1085
EcoO65I	GGTNACC	1 cut(s)	1553
EcoRI	GAATTC	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	1935
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	2064
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	363
FalI	AAGNNNNNCTT	6 cut(s)	390, 422, 763, 795, 1653, 1685
FaqI	GGGAC	2 cut(s)	873, 1354
FauNDI	CATATG	1 cut(s)	1129
FblI	GTMKAC	1 cut(s)	599
Fnu4HI	GCNGC	7 cut(s)	57, 147, 186, 189, 995, 1043, 1953
FokI	GGATG	3 cut(s)	479, 1009, 1627
FriOI	GRGCYC	1 cut(s)	2064
FseI	GGCCGGCC	1 cut(s)	892
Fsp4HI	GCNGC	7 cut(s)	57, 147, 186, 189, 995, 1043, 1953
FspBI	CTAG	6 cut(s)	20, 768, 831, 1284, 1532, 1769
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	7 cut(s)	57, 147, 186, 189, 995, 1043, 1953
GsaI	CCCAGC	1 cut(s)	1500
GsuI	CTGGAG	3 cut(s)	340, 510, 927
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	9 cut(s)	8, 146, 155, 167, 704, 888, 892, 1185, 1965
HapII	CCGG	3 cut(s)	5, 197, 889
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	3 cut(s)	535, 828, 946
HindII	GTYRAC	3 cut(s)	535, 828, 946
HindIII	AAGCTT	1 cut(s)	988
HinfI	GANTC	7 cut(s)	70, 514, 686, 692, 920, 1275, 2108
HpaII	CCGG	3 cut(s)	5, 197, 889
HphI	GGTGA	6 cut(s)	438, 521, 624, 1547, 1863, 1925
Hpy166II	GTNNAC	6 cut(s)	428, 535, 600, 828, 946, 1933
Hpy188I	TCNGA	7 cut(s)	14, 139, 595, 691, 937, 1017, 2047
Hpy8I	GTNNAC	6 cut(s)	428, 535, 600, 828, 946, 1933
HpyAV	CCTTC	7 cut(s)	97, 360, 765, 1336, 1346, 1420, 1568
HpyCH4IV	ACGT	1 cut(s)	1846
HpyF3I	CTNAG	5 cut(s)	711, 735, 1081, 1245, 1599
HpySE526I	ACGT	1 cut(s)	1846
Hsp92I	GRCGYC	1 cut(s)	209
HspAI	GCGC	1 cut(s)	209
KasI	GGCGCC	1 cut(s)	208
KroI	GCCGGC	2 cut(s)	4, 888
KroNI	GCCGGC	2 cut(s)	6, 890
Kzo9I	GATC	7 cut(s)	111, 574, 932, 1168, 1380, 1562, 1621
LmnI	GCTCC	4 cut(s)	196, 491, 574, 1341
Lsp1109I	GCAGC	4 cut(s)	172, 175, 1054, 1939
LweI	GCATC	4 cut(s)	721, 793, 1426, 1461
MaeI	CTAG	6 cut(s)	20, 768, 831, 1284, 1532, 1769
MaeII	ACGT	1 cut(s)	1846
MaeIII	GTNAC	8 cut(s)	329, 665, 796, 833, 912, 1553, 1721, 1869
MalI	GATC	7 cut(s)	113, 576, 934, 1170, 1382, 1564, 1623
MbiI	CCGCTC	1 cut(s)	1612
MboI	GATC	7 cut(s)	111, 574, 932, 1168, 1380, 1562, 1621
MfeI	CAATTG	1 cut(s)	1647
MflI	RGATCY	4 cut(s)	932, 1168, 1380, 1621
MhlI	GDGCHC	3 cut(s)	269, 430, 2064
MlsI	TGGCCA	1 cut(s)	704
MluNI	TGGCCA	1 cut(s)	704
Mly113I	GGCGCC	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	1269
Mox20I	TGGCCA	1 cut(s)	704
MroNI	GCCGGC	2 cut(s)	4, 888
MroXI	GAANNNNTTC	1 cut(s)	2093
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	5 cut(s)	519, 651, 810, 1050, 2013
MslI	CAYNNNNRTG	6 cut(s)	176, 368, 381, 414, 435, 528
Msp20I	TGGCCA	1 cut(s)	704
MspA1I	CMGCKG	2 cut(s)	1066, 1206
MspI	CCGG	3 cut(s)	5, 197, 889
MspR9I	CCNGG	1 cut(s)	1937
MunI	CAATTG	1 cut(s)	1647
Mva1269I	GAATGC	4 cut(s)	21, 94, 347, 1954
MvaI	CCWGG	1 cut(s)	1937
NaeI	GCCGGC	2 cut(s)	6, 890
NarI	GGCGCC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	7 cut(s)	111, 574, 932, 1168, 1380, 1562, 1621
NgoMIV	GCCGGC	2 cut(s)	4, 888
NlaIV	GGNNCC	5 cut(s)	210, 361, 861, 1715, 1776
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	5 cut(s)	329, 665, 833, 1553, 1869
NspI	RCATGY	2 cut(s)	724, 1293
NspV	TTCGAA	1 cut(s)	2106
OliI	CACNNNNGTG	1 cut(s)	381
PagI	TCATGA	2 cut(s)	114, 1441
PaqCI	CACCTGC	1 cut(s)	643
PciI	ACATGT	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	2103
PctI	GAATGC	4 cut(s)	21, 94, 347, 1954
PdiI	GCCGGC	2 cut(s)	6, 890
PdmI	GAANNNNTTC	1 cut(s)	2093
PfeI	GAWTC	6 cut(s)	70, 514, 686, 692, 920, 2108
PflFI	GACNNNGTC	1 cut(s)	327
PkrI	GCNGC	7 cut(s)	58, 148, 187, 190, 996, 1044, 1954
PleI	GAGTC	1 cut(s)	1269
PluTI	GGCGCC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	1269
PpuMI	RGGWCCY	2 cut(s)	860, 1085
PscI	ACATGT	1 cut(s)	720
PshBI	ATTAAT	1 cut(s)	2013
Psp5II	RGGWCCY	2 cut(s)	860, 1085
Psp6I	CCWGG	1 cut(s)	1935
PspEI	GGTNACC	1 cut(s)	1553
PspFI	CCCAGC	1 cut(s)	1496
PspGI	CCWGG	1 cut(s)	1935
PspN4I	GGNNCC	5 cut(s)	210, 361, 861, 1715, 1776
PspPI	GGNCC	4 cut(s)	7, 860, 1085, 1508
PspPPI	RGGWCCY	2 cut(s)	860, 1085
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	4 cut(s)	932, 1168, 1380, 1621
PsyI	GACNNNGTC	1 cut(s)	327
PvuII	CAGCTG	2 cut(s)	1066, 1206
RigI	GGCCGGCC	1 cut(s)	892
RsaI	GTAC	9 cut(s)	454, 487, 565, 778, 982, 1151, 1845, 1910, 2039
RsaNI	GTAC	9 cut(s)	453, 486, 564, 777, 981, 1150, 1844, 1909, 2038
RseI	CAYNNNNRTG	6 cut(s)	176, 368, 381, 414, 435, 528
SaqAI	TTAA	5 cut(s)	519, 651, 810, 1050, 2013
SatI	GCNGC	7 cut(s)	57, 147, 186, 189, 995, 1043, 1953
Sau3AI	GATC	7 cut(s)	111, 574, 932, 1168, 1380, 1562, 1621
Sau96I	GGNCC	4 cut(s)	7, 860, 1085, 1508
ScaI	AGTACT	1 cut(s)	454
SchI	GAGTC	1 cut(s)	1269
ScrFI	CCNGG	1 cut(s)	1937
SduI	GDGCHC	3 cut(s)	269, 430, 2064
SfaNI	GCATC	4 cut(s)	721, 793, 1426, 1461
SfcI	CTRYAG	1 cut(s)	1226
SfiI	GGCCNNNNNGGCC	1 cut(s)	152
SfoI	GGCGCC	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	2106
SinI	GGWCC	3 cut(s)	860, 1085, 1508
SmiMI	CAYNNNNRTG	6 cut(s)	176, 368, 381, 414, 435, 528
SmlI	CTYRAG	1 cut(s)	1487
SmoI	CTYRAG	1 cut(s)	1487
SpeI	ACTAGT	1 cut(s)	830
SsiI	CCGC	7 cut(s)	56, 92, 147, 262, 401, 995, 1612
SspDI	GGCGCC	1 cut(s)	208
SspI	AATATT	2 cut(s)	1122, 1783
SspMI	CTAG	6 cut(s)	20, 768, 831, 1284, 1532, 1769
StyD4I	CCNGG	1 cut(s)	1935
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	1849
TaqI	TCGA	8 cut(s)	269, 353, 619, 1561, 1632, 1816, 1824, 2106
TatI	WGTACW	4 cut(s)	452, 1149, 1908, 2037
TauI	GCSGC	3 cut(s)	59, 149, 997
TfiI	GAWTC	6 cut(s)	70, 514, 686, 692, 920, 2108
Tru1I	TTAA	5 cut(s)	519, 651, 810, 1050, 2013
Tru9I	TTAA	5 cut(s)	519, 651, 810, 1050, 2013
TscAI	CASTG	9 cut(s)	236, 323, 388, 442, 535, 910, 1235, 1371, 2106
TseFI	GTSAC	5 cut(s)	329, 665, 833, 1553, 1869
TseI	GCWGC	4 cut(s)	185, 188, 1042, 1952
Tsp45I	GTSAC	5 cut(s)	329, 665, 833, 1553, 1869
TspDTI	ATGAA	6 cut(s)	398, 468, 671, 1043, 1595, 1961
TspGWI	ACGGA	2 cut(s)	213, 1716
TspRI	CASTG	9 cut(s)	236, 323, 388, 442, 535, 910, 1235, 1371, 2106
Tth111I	GACNNNGTC	1 cut(s)	327
VneI	GTGCAC	1 cut(s)	426
VpaK11BI	GGWCC	3 cut(s)	860, 1085, 1508
VspI	ATTAAT	1 cut(s)	2013
XapI	RAATTY	5 cut(s)	613, 658, 745, 1322, 1329
XbaI	TCTAGA	2 cut(s)	1283, 1768
XceI	RCATGY	2 cut(s)	724, 1293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1418
XmiI	GTMKAC	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	2093
XspI	CTAG	6 cut(s)	20, 768, 831, 1284, 1532, 1769
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.