Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014594

Physical Location & Seq

Genomic Coordinates Reverse (-)

3167098 .. 3172422

Gene Structure 5325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2334 bp

ATGAAGCTCCGAGCTCTCATTCTCATCCCTTTTATCTTCTTCTCCACCCTCATCTTCCTCATTGATCTCACCGAGTCAACTCAGCCCCCATATTCATGTGACTCGTCCAACCCATCAACCGAGTCCTACCCTTTTTGCAAAACAACCCTCCCAATCCACGAAAGAGTCCATGACCTCGTCTCGCGTCTCACATTGGACGAGAAGATCTCCCAACTCGTCAACTCGGCCCCTCCGATTCCCCGACTCGGTATCCCGAGTTACGAGTGGTGGTCGGAGGCTCTTCACGGCGTCGCCGACGTCGGCAAAGGCGTTCGTCTCTATGGCACCGTCTCCGGCGCCACCAGCTTCCCTCAAGTCATTTTAACCGCTGCTTCATTCAATGAGCATCTCTGGTACAGAATCGGTCAGGCGATCGGAACCGAAGCGAGGGCGGTGTACAATGCAGGACAAGCGACAGGGATGACATTTTGGGCACCAAACATCAACATTTTCAGGGACCCAAGATGGGGAAGAGGGCAAGAGACTCCCGGGGAAGACCCAATGATGACGGGAAAATACGCCGTGGCGTATGTTCGAGGTGTTCAAGGTGATTCATATGAGGGAGGGAAGCTGGCTGGCCATCTCAAGGCCTCGGCTTGCTGTAAGCATTTCACGGCGTACGATCTGGATAGCTGGAATAATGTGACTCGTTTTGGGTTTAATGCAAAGGTGACTCAGCAAGACCTAGCAGACACGTACCAACCTCCATTCAAGAGTTGCGTCGAGCAAGGCAAAGCCAGTGGCATCATGTGTGCTTATAATCAAGTCAATGGAGTCCCAAGCTGTGCAGATCACAATCTCTTAACCAAGACTGCTCGAGGACAATGGGACTTTCACGGGTACATCACGTCGGACTGCGATGCCGTCGGCATCATCCACGACGTGCAGGGATACGCTAAGCAGCCGGAAGATGCCGTCGTCGATGTACTCAAAGCAGGCATGGATGTGAACTGTGGAACCTACTTGCAGAATTACACGAAAAGTGCGGTGCAGCAGAAAAAGCTGCCCATAACATACATAGACAAAGCCCTCCACAACCTGTTCTCTATAAGGATGAGGTTAGGTCTGTTTGATGGCAACCCAACCAAGCTACTTTTCGGCAACATTGGTCCAGACCAAGTGTGCTCTAAACAGCACCAAGTTTTAGCCCTAGAAGCTGCAGAAGATGGCATTGTGCTTTTGAAGAACGCAGATAAGCTACTCCCACTACCTAAATCAAAGGGAATTTCTCTTGCTGTAATCGGTCCCAATGCCAATGCTTCCGAAACACTTCTCGGAAACTATCATGGCCCACCATGCAAGGTCATTACGCCATTAGAAGGACTGCTAGGTTATGCTAAGAAAACAGTGTATCACCCTGGATGTGATACAGTTAAATGCCCTAATCCTACGATTGATCAAGCTGTGAAAGTAGCAGAACAGGCAGATTATGTGGTTTTGATTGTGGGATTGGACCAAAGTGAAGAGAGAGAGGCGCACGATAGAGACCACTTATTCTTGCCTGGTAAGCAACAGCAACTCATTAGCAGTGTGGCTAAAGCTGCCAAGAAACCAGTGATTCTTGTGATTCTCTCTGGGGGTCCAGTTGACATATCTGCAGCCAAGGATAATCCAAAAATAGGAAGCATCTTGTGGGCTGGATACCCAGGTGAAGCTGGTGGAATTGCCCTGGCAGAAATCATCTTTGGTGATCACAACCCAGGTGGAAGGCTGCCAGTAACATGGTATACACAAGATTACATCAAAACACCAATGACTGACATGAGGATGAGGCATGACAAAAAATCAGGCTATCCTGGGCGCACTTACAGATTCTACACAGGCAAAAGAGTGTTTGATTTCGGTTATGGCCTCAGCTACTCCAACTACGCTTATCACTTTGTATCTTCATTAACCCAAAAGAATCTCTACCTAAATGAGTCATCGGTTGGTCTACCAGCTAAGAATTCGGACTCTAGACGCTACCAGTTAGTTTCAGATCTAGGTGAAGAATTCTGTCAGAAGAATTTGTTCAAGGTCACTGTTAGGGCTAAGAATGATGGAGAGATGGCTGGTAAGCATCCAGTGTTGCTATTTGTAAGTCAGAAAAATCCGACAAATGGAAGTCCAATAAAACAGTTGGTTGGATTCAAAAGCGTGATACTAAGCGCTGGGGAGAGAGCTGAATTTGAATTCATGCTGAACCCTTGTGAGCATTTCAGCCATGCAAATGAGGATGGATTGATGGTGGTAGAAGAAGGTTCTCGTTTCTTGGTTGTGGGTGATGTAGAGCACCCTATTCATGTCATAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

777

Amino Acids

85.4

Weight (kDa)

6.9

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	110 - 360	2.5e-32	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	404 - 633	1.2e-53	Glycosyl hydrolase family 3 C-terminal domain
Fn3-like	PF14310	702 - 768	1.1e-10	Fibronectin type III-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78060
fragaria_vesca	FvH4_5g37840
malus_domestica	MD08G1179900.v1.1 MD15G1365200.v1.1
prunus_persica	Prupe.1G513200_v2.0.a1
pyrus_communis	pycom08g15400 pycom15g32750
rosa_chinensis	RchiOBHm_Chr7g0239821
rosa_laevigata	RLG00000000728
rosa_multiflora	Rmu_sc0007193.1_g000008
rosa_roxburghii	Rroxscaffold_3G00220790
rosa_rugosa	Rorug07G0329500
rosa_samantha	Rh7AG483700 Rh7BG456700 Rh7CG501200 Rh7DG469400
rosa_wichuraiana	Rw7G040570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AatII	GACGTC	1 cut(s)	300
AccB1I	GGYRCC	3 cut(s)	323, 335, 472
AccI	GTMKAC	2 cut(s)	1766, 1972
AccII	CGCG	1 cut(s)	184
AciI	CCGC	3 cut(s)	366, 431, 1025
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	6 cut(s)	1263, 1984, 2030, 2044, 2204, 2210
AcyI	GRCGYC	3 cut(s)	288, 297, 336
AdeI	CACNNNGTG	1 cut(s)	922
AfaI	GTAC	6 cut(s)	395, 437, 659, 737, 881, 966
AfeI	AGCGCT	1 cut(s)	2188
AfiI	CCNNNNNNNGG	8 cut(s)	245, 426, 505, 506, 625, 1358, 1658, 2138
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	7 cut(s)	379, 584, 751, 1222, 2053, 2170, 2210
AjiI	CACGTC	2 cut(s)	888, 922
AjnI	CCWGG	6 cut(s)	1396, 1540, 1684, 1707, 1738, 1834
AjuI	GAANNNNNNNTTGG	4 cut(s)	1118, 1150, 1707, 1739
Alw21I	GWGCWC	3 cut(s)	16, 1166, 2313
Alw26I	GTCTC	6 cut(s)	184, 191, 320, 334, 515, 1518
Ama87I	CYCGRG	3 cut(s)	253, 527, 855
Aor51HI	AGCGCT	1 cut(s)	2188
AoxI	GGCC	5 cut(s)	225, 616, 627, 1327, 1888
ApeKI	GCWGC	8 cut(s)	368, 940, 1030, 1042, 1196, 1580, 1637, 1750
ApoI	RAATTY	6 cut(s)	1263, 1984, 2030, 2044, 2204, 2210
Asp700I	GAANNNNTTC	2 cut(s)	1308, 2048
AspLEI	GCGC	4 cut(s)	338, 1516, 1842, 2189
AspS9I	GGNCC	7 cut(s)	226, 496, 1148, 1283, 1328, 1492, 1619
AsuC2I	CCSGG	2 cut(s)	528, 529
AsuHPI	GGTGA	8 cut(s)	61, 599, 721, 1385, 1700, 1739, 2036, 2312
AvaI	CYCGRG	3 cut(s)	253, 527, 855
AvaII	GGWCC	5 cut(s)	496, 1148, 1283, 1492, 1619
BaeGI	GKGCMC	1 cut(s)	475
BaeI	ACNNNNGTAYC	2 cut(s)	1672, 1705
BalI	TGGCCA	1 cut(s)	618
BanI	GGYRCC	3 cut(s)	323, 335, 472
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	3 cut(s)	16, 1166, 2313
BbvCI	CCTCAGC	1 cut(s)	1892
BbvI	GCAGC	8 cut(s)	355, 952, 1029, 1042, 1183, 1567, 1649, 1737
BccI	CCATC	9 cut(s)	121, 498, 627, 1106, 1199, 2072, 2080, 2249, 2257
BceAI	ACGGC	5 cut(s)	301, 545, 669, 887, 938
BciT130I	CCWGG	6 cut(s)	1398, 1542, 1686, 1709, 1740, 1836
BciVI	GTATCC	3 cut(s)	260, 923, 1673
BclI	TGATCA	2 cut(s)	1435, 1729
BcnI	CCSGG	2 cut(s)	528, 529
BcoDI	GTCTC	6 cut(s)	184, 191, 320, 334, 515, 1518
BfaI	CTAG	5 cut(s)	725, 1190, 1367, 1995, 2021
BfmI	CTRYAG	2 cut(s)	1197, 1635
BfoI	RGCGCY	2 cut(s)	339, 2190
BfuI	GTATCC	3 cut(s)	260, 923, 1673
BglII	AGATCT	2 cut(s)	204, 2017
BisI	GCNGC	8 cut(s)	369, 941, 1031, 1043, 1197, 1581, 1638, 1751
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	8 cut(s)	370, 942, 1032, 1044, 1198, 1582, 1639, 1752
Bme1390I	CCNGG	8 cut(s)	528, 529, 1398, 1542, 1686, 1709, 1740, 1836
Bme18I	GGWCC	5 cut(s)	496, 1148, 1283, 1492, 1619
BmeT110I	CYCGRG	3 cut(s)	253, 527, 855
BmgBI	CACGTC	2 cut(s)	888, 922
BmgT120I	GGNCC	7 cut(s)	226, 496, 1148, 1283, 1328, 1492, 1619
BmrFI	CCNGG	8 cut(s)	528, 529, 1398, 1542, 1686, 1709, 1740, 1836
BmsI	GCATC	7 cut(s)	394, 792, 889, 918, 940, 1674, 2107
BpiI	GAAGAC	1 cut(s)	540
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	1892
Bpu1102I	GCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	2 cut(s)	336, 608
BpuMI	CCSGG	2 cut(s)	528, 529
BsaAI	YACGTR	1 cut(s)	735
BsaBI	GATNNNNATC	1 cut(s)	834
BsaHI	GRCGYC	3 cut(s)	288, 297, 336
BsaI	GGTCTC	1 cut(s)	1518
Bsc4I	CCNNNNNNNGG	8 cut(s)	245, 426, 505, 506, 625, 1358, 1658, 2138
Bse1I	ACTGG	6 cut(s)	777, 1592, 1622, 1754, 2005, 2102
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	6 cut(s)	1398, 1542, 1686, 1709, 1740, 1836
BseGI	GGATG	9 cut(s)	24, 465, 912, 988, 1098, 1406, 1812, 2098, 2260
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	8 cut(s)	245, 426, 505, 506, 625, 1358, 1658, 2138
BseMII	CTCAG	3 cut(s)	95, 728, 1906
BseNI	ACTGG	6 cut(s)	777, 1592, 1622, 1754, 2005, 2102
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	8 cut(s)	355, 952, 1029, 1042, 1183, 1567, 1649, 1737
BseYI	CCCAGC	1 cut(s)	2189
BsgI	GTGCAG	3 cut(s)	846, 944, 1049
Bsh1236I	CGCG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	227, 618, 629, 1329, 1890
BshNI	GGYRCC	3 cut(s)	323, 335, 472
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	3 cut(s)	16, 1166, 2313
BsiHKCI	CYCGRG	3 cut(s)	253, 527, 855
BsiSI	CCGG	3 cut(s)	333, 528, 944
BsiWI	CGTACG	1 cut(s)	657
BslFI	GGGAC	4 cut(s)	509, 800, 881, 1269
BslI	CCNNNNNNNGG	8 cut(s)	245, 426, 505, 506, 625, 1358, 1658, 2138
BsmAI	GTCTC	6 cut(s)	184, 191, 320, 334, 515, 1518
BsmBI	CGTCTC	4 cut(s)	184, 191, 320, 334
BsmFI	GGGAC	4 cut(s)	509, 800, 881, 1269
BsnI	GGCC	5 cut(s)	227, 618, 629, 1329, 1890
Bso31I	GGTCTC	1 cut(s)	1518
BsoBI	CYCGRG	3 cut(s)	253, 527, 855
Bsp1286I	GDGCHC	4 cut(s)	16, 475, 1166, 2313
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	8 cut(s)	64, 204, 411, 661, 829, 1435, 1729, 2017
Bsp1720I	GCTNAGC	1 cut(s)	936
BspACI	CCGC	3 cut(s)	366, 431, 1025
BspANI	GGCC	5 cut(s)	227, 618, 629, 1329, 1890
BspCNI	CTCAG	3 cut(s)	94, 727, 1905
BspFNI	CGCG	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	1201, 1639
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	3 cut(s)	323, 335, 472
BspTNI	GGTCTC	1 cut(s)	1518
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	6 cut(s)	777, 1592, 1622, 1754, 2005, 2102
BssMI	GATC	8 cut(s)	64, 204, 411, 661, 829, 1435, 1729, 2017
BssNAI	GTATAC	1 cut(s)	1767
BssNI	GRCGYC	3 cut(s)	288, 297, 336
BssT1I	CCWWGG	1 cut(s)	1641
Bst1107I	GTATAC	1 cut(s)	1767
Bst2UI	CCWGG	6 cut(s)	1398, 1542, 1686, 1709, 1740, 1836
Bst4CI	ACNGT	6 cut(s)	328, 992, 1387, 1411, 2062, 2157
Bst6I	CTCTTC	3 cut(s)	285, 505, 1497
BstACI	GRCGYC	3 cut(s)	288, 297, 336
BstAUI	TGTACA	1 cut(s)	435
BstBAI	YACGTR	1 cut(s)	735
BstC8I	GCNNGC	4 cut(s)	612, 616, 637, 976
BstDEI	CTNAG	8 cut(s)	81, 714, 936, 1377, 1892, 1980, 2070, 2183
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	9 cut(s)	24, 465, 912, 988, 1098, 1406, 1812, 2098, 2260
BstFNI	CGCG	1 cut(s)	184
BstH2I	RGCGCY	2 cut(s)	339, 2190
BstHHI	GCGC	4 cut(s)	338, 1516, 1842, 2189
BstKTI	GATC	8 cut(s)	67, 207, 414, 664, 832, 1438, 1732, 2020
BstMAI	GTCTC	6 cut(s)	184, 191, 320, 334, 515, 1518
BstMBI	GATC	8 cut(s)	64, 204, 411, 661, 829, 1435, 1729, 2017
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	8 cut(s)	342, 449, 1039, 1193, 1335, 1460, 1546, 1580
BstNI	CCWGG	6 cut(s)	1398, 1542, 1686, 1709, 1740, 1836
BstSCI	CCNGG	8 cut(s)	526, 527, 1396, 1540, 1684, 1707, 1738, 1834
BstSFI	CTRYAG	2 cut(s)	1197, 1635
BstSLI	GKGCMC	1 cut(s)	475
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	8 cut(s)	355, 952, 1029, 1042, 1183, 1567, 1649, 1737
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	2 cut(s)	204, 2017
BstXI	CCANNNNNNTGG	1 cut(s)	1761
BstYI	RGATCY	2 cut(s)	204, 2017
BstZ17I	GTATAC	1 cut(s)	1767
BsuI	GTATCC	3 cut(s)	260, 923, 1673
BsuRI	GGCC	5 cut(s)	227, 618, 629, 1329, 1890
BtgI	CCRYGG	1 cut(s)	561
BtgZI	GCGATG	1 cut(s)	912
BtrI	CACGTC	2 cut(s)	888, 922
BtsCI	GGATG	9 cut(s)	24, 465, 912, 988, 1098, 1406, 1812, 2098, 2260
BtsI	GCAGTG	1 cut(s)	1573
BtsIMutI	CAGTG	6 cut(s)	784, 1392, 1573, 1599, 2058, 2109
Cac8I	GCNNGC	4 cut(s)	612, 616, 637, 976
CfoI	GCGC	4 cut(s)	338, 1516, 1842, 2189
Cfr13I	GGNCC	7 cut(s)	226, 496, 1148, 1283, 1328, 1492, 1619
Cfr9I	CCCGGG	1 cut(s)	527
CseI	GACGC	4 cut(s)	173, 277, 748, 2007
Csp6I	GTAC	6 cut(s)	394, 436, 658, 736, 880, 965
CspCI	CAANNNNNGTGG	4 cut(s)	760, 795, 1723, 1758
CviQI	GTAC	6 cut(s)	394, 436, 658, 736, 880, 965
DdeI	CTNAG	8 cut(s)	81, 714, 936, 1377, 1892, 1980, 2070, 2183
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	8 cut(s)	66, 206, 413, 663, 831, 1437, 1731, 2019
DpnII	GATC	8 cut(s)	64, 204, 411, 661, 829, 1435, 1729, 2017
DraIII	CACNNNGTG	1 cut(s)	922
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	3 cut(s)	285, 505, 1497
EarI	CTCTTC	3 cut(s)	285, 505, 1497
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	1641
Eco147I	AGGCCT	1 cut(s)	629
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	1518
Eco47I	GGWCC	5 cut(s)	496, 1148, 1283, 1492, 1619
Eco47III	AGCGCT	1 cut(s)	2188
Eco53kI	GAGCTC	1 cut(s)	14
Eco88I	CYCGRG	3 cut(s)	253, 527, 855
EcoICRI	GAGCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRI	GAATTC	3 cut(s)	1984, 2030, 2210
EcoRII	CCWGG	6 cut(s)	1396, 1540, 1684, 1707, 1738, 1834
EcoT14I	CCWWGG	1 cut(s)	1641
EcoT38I	GRGCYC	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	1641
Esp3I	CGTCTC	4 cut(s)	184, 191, 320, 334
FaqI	GGGAC	4 cut(s)	509, 800, 881, 1269
FauNDI	CATATG	1 cut(s)	595
FbaI	TGATCA	2 cut(s)	1435, 1729
FblI	GTMKAC	2 cut(s)	1766, 1972
Fnu4HI	GCNGC	8 cut(s)	369, 941, 1031, 1043, 1197, 1581, 1638, 1751
FokI	GGATG	9 cut(s)	11, 472, 899, 995, 1105, 1413, 1819, 2085, 2267
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	8 cut(s)	369, 941, 1031, 1043, 1197, 1581, 1638, 1751
FspBI	CTAG	5 cut(s)	725, 1190, 1367, 1995, 2021
GlaI	GCGC	4 cut(s)	337, 1515, 1841, 2188
GluI	GCNGC	8 cut(s)	369, 941, 1031, 1043, 1197, 1581, 1638, 1751
GsaI	CCCAGC	1 cut(s)	2193
HaeII	RGCGCY	2 cut(s)	339, 2190
HaeIII	GGCC	5 cut(s)	227, 618, 629, 1329, 1890
HapII	CCGG	3 cut(s)	333, 528, 944
HgaI	GACGC	4 cut(s)	173, 277, 748, 2007
HhaI	GCGC	4 cut(s)	338, 1516, 1842, 2189
Hin1I	GRCGYC	3 cut(s)	288, 297, 336
Hin6I	GCGC	4 cut(s)	336, 1514, 1840, 2187
HinP1I	GCGC	4 cut(s)	336, 1514, 1840, 2187
HincII	GTYRAC	3 cut(s)	78, 220, 1627
HindII	GTYRAC	3 cut(s)	78, 220, 1627
HpaII	CCGG	3 cut(s)	333, 528, 944
HphI	GGTGA	8 cut(s)	61, 599, 721, 1385, 1700, 1739, 2036, 2312
Hpy166II	GTNNAC	7 cut(s)	78, 220, 436, 988, 1627, 1767, 1973
Hpy188III	TCNNGA	5 cut(s)	253, 665, 751, 1151, 1995
Hpy8I	GTNNAC	7 cut(s)	78, 220, 436, 988, 1627, 1767, 1973
Hpy99I	CGWCG	9 cut(s)	293, 299, 302, 764, 892, 908, 923, 959, 962
HpyAV	CCTTC	3 cut(s)	1352, 1740, 2270
HpyCH4III	ACNGT	6 cut(s)	328, 992, 1387, 1411, 2062, 2157
HpyCH4IV	ACGT	4 cut(s)	297, 734, 887, 921
HpyF10VI	GCNNNNNNNGC	8 cut(s)	342, 449, 1039, 1193, 1335, 1460, 1546, 1580
HpyF3I	CTNAG	8 cut(s)	81, 714, 936, 1377, 1892, 1980, 2070, 2183
HpySE526I	ACGT	4 cut(s)	297, 734, 887, 921
Hsp92I	GRCGYC	3 cut(s)	288, 297, 336
HspAI	GCGC	4 cut(s)	336, 1514, 1840, 2187
KasI	GGCGCC	1 cut(s)	335
KflI	GGGWCCC	1 cut(s)	496
Ksp22I	TGATCA	2 cut(s)	1435, 1729
Kzo9I	GATC	8 cut(s)	64, 204, 411, 661, 829, 1435, 1729, 2017
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	8 cut(s)	355, 952, 1029, 1042, 1183, 1567, 1649, 1737
LweI	GCATC	7 cut(s)	394, 792, 889, 918, 940, 1674, 2107
MaeI	CTAG	5 cut(s)	725, 1190, 1367, 1995, 2021
MaeII	ACGT	4 cut(s)	297, 734, 887, 921
MaeIII	GTNAC	6 cut(s)	98, 257, 682, 709, 1756, 2056
MalI	GATC	8 cut(s)	66, 206, 413, 663, 831, 1437, 1731, 2019
MboI	GATC	8 cut(s)	64, 204, 411, 661, 829, 1435, 1729, 2017
MflI	RGATCY	2 cut(s)	204, 2017
MhlI	GDGCHC	4 cut(s)	16, 475, 1166, 2313
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	8 cut(s)	1009, 1263, 1701, 1984, 2030, 2044, 2204, 2210
MluNI	TGGCCA	1 cut(s)	618
Mly113I	GGCGCC	1 cut(s)	336
MmeI	TCCRAC	6 cut(s)	132, 252, 870, 1926, 2143, 2156
Mox20I	TGGCCA	1 cut(s)	618
MroXI	GAANNNNTTC	2 cut(s)	1308, 2048
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	5 cut(s)	362, 699, 842, 1413, 1931
MslI	CAYNNNNRTG	4 cut(s)	94, 983, 1805, 2247
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	3 cut(s)	333, 528, 944
MspR9I	CCNGG	8 cut(s)	528, 529, 1398, 1542, 1686, 1709, 1740, 1836
MvaI	CCWGG	6 cut(s)	1398, 1542, 1686, 1709, 1740, 1836
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	8 cut(s)	342, 449, 1039, 1193, 1335, 1460, 1546, 1580
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	2 cut(s)	528, 529
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	8 cut(s)	64, 204, 411, 661, 829, 1435, 1729, 2017
NmeAIII	GCCGAG	2 cut(s)	203, 611
NmuCI	GTSAC	4 cut(s)	98, 682, 709, 2056
PaeR7I	CTCGAG	1 cut(s)	855
PceI	AGGCCT	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	3 cut(s)	230, 291, 306
PdmI	GAANNNNTTC	2 cut(s)	1308, 2048
PfeI	GAWTC	8 cut(s)	235, 399, 590, 1597, 1606, 1851, 1942, 2166
Pfl23II	CGTACG	1 cut(s)	657
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	8 cut(s)	370, 942, 1032, 1044, 1198, 1582, 1639, 1752
Ple19I	CGATCG	1 cut(s)	414
PluTI	GGCGCC	1 cut(s)	339
Ppu21I	YACGTR	1 cut(s)	735
PpuMI	RGGWCCY	1 cut(s)	496
PsiI	TTATAA	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	496
Psp6I	CCWGG	6 cut(s)	1396, 1540, 1684, 1707, 1738, 1834
PspFI	CCCAGC	1 cut(s)	2189
PspGI	CCWGG	6 cut(s)	1396, 1540, 1684, 1707, 1738, 1834
PspLI	CGTACG	1 cut(s)	657
PspPI	GGNCC	7 cut(s)	226, 496, 1148, 1283, 1328, 1492, 1619
PspPPI	RGGWCCY	1 cut(s)	496
PspXI	VCTCGAGB	1 cut(s)	855
PstI	CTGCAG	2 cut(s)	1201, 1639
PsuI	RGATCY	2 cut(s)	204, 2017
PsyI	GACNNNGTC	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	414
RsaI	GTAC	6 cut(s)	395, 437, 659, 737, 881, 966
RsaNI	GTAC	6 cut(s)	394, 436, 658, 736, 880, 965
RseI	CAYNNNNRTG	4 cut(s)	94, 983, 1805, 2247
SacI	GAGCTC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	5 cut(s)	362, 699, 842, 1413, 1931
SatI	GCNGC	8 cut(s)	369, 941, 1031, 1043, 1197, 1581, 1638, 1751
Sau3AI	GATC	8 cut(s)	64, 204, 411, 661, 829, 1435, 1729, 2017
Sau96I	GGNCC	7 cut(s)	226, 496, 1148, 1283, 1328, 1492, 1619
ScrFI	CCNGG	8 cut(s)	528, 529, 1398, 1542, 1686, 1709, 1740, 1836
SduI	GDGCHC	4 cut(s)	16, 475, 1166, 2313
SfaNI	GCATC	7 cut(s)	394, 792, 889, 918, 940, 1674, 2107
SfcI	CTRYAG	2 cut(s)	1197, 1635
SfoI	GGCGCC	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	855
SinI	GGWCC	5 cut(s)	496, 1148, 1283, 1492, 1619
SlaI	CTCGAG	1 cut(s)	855
SmaI	CCCGGG	1 cut(s)	529
SmiMI	CAYNNNNRTG	4 cut(s)	94, 983, 1805, 2247
SmlI	CTYRAG	3 cut(s)	351, 623, 855
SmoI	CTYRAG	3 cut(s)	351, 623, 855
Sse9I	AATT	8 cut(s)	1009, 1263, 1701, 1984, 2030, 2044, 2204, 2210
SseBI	AGGCCT	1 cut(s)	629
SsiI	CCGC	3 cut(s)	366, 431, 1025
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	5 cut(s)	725, 1190, 1367, 1995, 2021
SstI	GAGCTC	1 cut(s)	16
StuI	AGGCCT	1 cut(s)	629
StyD4I	CCNGG	8 cut(s)	526, 527, 1396, 1540, 1684, 1707, 1738, 1834
StyI	CCWWGG	1 cut(s)	1641
TaaI	ACNGT	6 cut(s)	328, 992, 1387, 1411, 2062, 2157
TaiI	ACGT	4 cut(s)	300, 737, 890, 924
TaqI	TCGA	4 cut(s)	574, 762, 856, 960
TaqII	GACCGA	2 cut(s)	392, 1271
TasI	AATT	8 cut(s)	1009, 1263, 1701, 1984, 2030, 2044, 2204, 2210
TatI	WGTACW	2 cut(s)	435, 964
TfiI	GAWTC	8 cut(s)	235, 399, 590, 1597, 1606, 1851, 1942, 2166
Tru1I	TTAA	5 cut(s)	362, 699, 842, 1413, 1931
Tru9I	TTAA	5 cut(s)	362, 699, 842, 1413, 1931
TscAI	CASTG	6 cut(s)	784, 1392, 1573, 1599, 2065, 2109
TseFI	GTSAC	4 cut(s)	98, 682, 709, 2056
TseI	GCWGC	8 cut(s)	368, 940, 1030, 1042, 1196, 1580, 1637, 1750
Tsp45I	GTSAC	4 cut(s)	98, 682, 709, 2056
TspDTI	ATGAA	7 cut(s)	17, 84, 363, 582, 1917, 2203, 2309
TspMI	CCCGGG	1 cut(s)	527
TspRI	CASTG	6 cut(s)	784, 1392, 1573, 1599, 2065, 2109
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	5 cut(s)	496, 1148, 1283, 1492, 1619
XapI	RAATTY	6 cut(s)	1263, 1984, 2030, 2044, 2204, 2210
XbaI	TCTAGA	1 cut(s)	1994
XhoI	CTCGAG	1 cut(s)	855
XmaI	CCCGGG	1 cut(s)	527
XmiI	GTMKAC	2 cut(s)	1766, 1972
XmnI	GAANNNNTTC	2 cut(s)	1308, 2048
XspI	CTAG	5 cut(s)	725, 1190, 1367, 1995, 2021
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.