Rroxscaffold_3G00236040
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
23251931 .. 23253114
1184 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00236040.1

Sequence Viewer

Length: 219 bp
ATGGCCTCTGTAAGTGTGGCTCCTTTATCTGGATTAACATACCACAGTGGAATTACAGTTGCTATCAATAGTTTGCCCAGTGAGATGAATGACATGAAAATTAGGGATGACAAGGAAATGGAAGCAACTGTTGTAGATGGTAAAGGAACAGAAACGGGTCATATGATTGTCACGACTATTGGTGGAAGAAATGGCCGGCCAAAGCAGGTGACTTTTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

7.65

Weight (kDa)

6.03

Isoelectric Point (pI)

20.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017873)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AcoI YGGCCR 2 cut(s) 193, 197
AfiI CCNNNNNNNGG 1 cut(s) 29
AoxI GGCC 3 cut(s) 3, 193, 197
BccI CCATC 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 21
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 78
BshFI GGCC 3 cut(s) 5, 195, 199
BsiSI CCGG 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 3 cut(s) 5, 195, 199
BspANI GGCC 3 cut(s) 5, 195, 199
BspLI GGNNCC 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 47, 58, 130
BstC8I GCNNGC 1 cut(s) 197
BstF5I GGATG 1 cut(s) 112
BsuRI GGCC 3 cut(s) 5, 195, 199
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 52, 85
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 195
CviAII CATG 1 cut(s) 94
CviJI RGCY 4 cut(s) 5, 20, 195, 199
CviKI_1 RGCY 4 cut(s) 5, 20, 195, 199
EaeI YGGCCR 2 cut(s) 193, 197
FaeI CATG 1 cut(s) 97
FaiI YATR 4 cut(s) 40, 95, 162, 164
FatI CATG 1 cut(s) 93
FauNDI CATATG 1 cut(s) 162
FokI GGATG 1 cut(s) 119
FseI GGCCGGCC 1 cut(s) 199
HaeIII GGCC 3 cut(s) 5, 195, 199
HapII CCGG 1 cut(s) 196
Hin1II CATG 1 cut(s) 97
HpaII CCGG 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 30, 172
HpyCH4III ACNGT 3 cut(s) 47, 58, 130
Hsp92II CATG 1 cut(s) 97
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 15, 91, 191, 209
MaeIII GTNAC 2 cut(s) 169, 208
MboII GAAGA 1 cut(s) 198
MluCI AATT 2 cut(s) 51, 99
MnlI CCTC 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 195
MseI TTAA 2 cut(s) 35, 217
MspI CCGG 1 cut(s) 196
NaeI GCCGGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 162
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 169, 208
PaqCI CACCTGC 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 21
RigI GGCCGGCC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 35, 217
SetI ASST 1 cut(s) 210
SgeI CNNG 7 cut(s) 42, 90, 106, 124, 168, 184, 208
Sse9I AATT 2 cut(s) 51, 99
TaaI ACNGT 3 cut(s) 47, 58, 130
TasI AATT 2 cut(s) 51, 99
Tru1I TTAA 2 cut(s) 35, 217
Tru9I TTAA 2 cut(s) 35, 217
TscAI CASTG 2 cut(s) 52, 85
TseFI GTSAC 2 cut(s) 169, 208
Tsp45I GTSAC 2 cut(s) 169, 208
TspDTI ATGAA 2 cut(s) 101, 110
TspRI CASTG 2 cut(s) 52, 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.