Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0017873

Physical Location & Seq

Genomic Coordinates Forward (+)

26523670 .. 26536110

Gene Structure 12441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG140200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACAATTAACATGATAGTTATTGGATACCGAGTCCATCCTTCCCTCTTCTCTGTGCCGGCGTCTCTTCCTCAGCCTTTGCCGCTACCTAGGAAATTGGCCGGCACCGGCGTGATTTCTGCATATACACAAAGGCAAGAGCTATCGACCAGATTGAACTTGGAGTGCGAATCAGTCAAGGAAAAGGCAAAAGGAGAATCAGGAACGAATGAACTTGGTAGGCAGCATTTTTGGGGTATGTTTTGCACCACTAGGCTTCTTAGTGATGCTGTTGTTGAAGTTGGAGAAATGTCATTCCATCTTCACAAGGAAATGGAAGCAACTGTTGTAGATGGTAAAGGAACAGAAATGGGTCATATAATTGTCACGACTATTGGCGGAAGAAATGGCCGGCCAAAGCAGTTTACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

137

Amino Acids

15.13

Weight (kDa)

8.66

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017873)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g27740
rosa_chinensis	RchiOBHm_Chr1g0334701
rosa_multiflora	Rmu_sc0006031.1_g000025
rosa_roxburghii	Rroxscaffold_3G00236040 Rroxscaffold_4G00316700
rosa_samantha	Rh1AG140200 Rh1BG107300 Rh1CG132100 Rh1DG144100 Rh3AG277600 Rh3BG312900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	2 cut(s)	83, 378
AcoI	YGGCCR	3 cut(s)	99, 388, 392
AcyI	GRCGYC	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	157, 278
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	3 cut(s)	99, 388, 392
ApeKI	GCWGC	1 cut(s)	223
AspA2I	CCTAGG	1 cut(s)	89
AvrII	CCTAGG	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	3 cut(s)	45, 306, 326
BciVI	GTATCC	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	90, 252
BfuI	GTATCC	1 cut(s)	20
BisI	GCNGC	2 cut(s)	83, 224
BlnI	CCTAGG	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	84, 225
BmiI	GGNNCC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	89
Bse118I	RCCGGY	4 cut(s)	58, 101, 107, 390
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	3 cut(s)	101, 390, 394
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	59, 102, 108, 391
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	101, 390, 394
BspACI	CCGC	2 cut(s)	83, 378
BspANI	GGCC	3 cut(s)	101, 390, 394
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	4 cut(s)	58, 101, 107, 390
BssAI	RCCGGY	4 cut(s)	58, 101, 107, 390
BssECI	CCNNGG	1 cut(s)	89
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	53, 72
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	60, 103, 392
BstDEI	CTNAG	2 cut(s)	72, 260
BstF5I	GGATG	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	101, 390, 394
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	60, 103, 392
Cfr10I	RCCGGY	4 cut(s)	58, 101, 107, 390
CseI	GACGC	1 cut(s)	51
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	76, 101, 142, 256, 390, 394
CviKI_1	RGCY	6 cut(s)	76, 101, 142, 256, 390, 394
DdeI	CTNAG	2 cut(s)	72, 260
EaeI	YGGCCR	3 cut(s)	99, 388, 392
Eam1104I	CTCTTC	2 cut(s)	53, 72
EarI	CTCTTC	2 cut(s)	53, 72
EciI	GGCGGA	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	1 cut(s)	16
FaiI	YATR	6 cut(s)	14, 124, 126, 239, 357, 359
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	83, 224
FokI	GGATG	1 cut(s)	24
FseI	GGCCGGCC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	83, 224
FspBI	CTAG	2 cut(s)	90, 252
GluI	GCNGC	2 cut(s)	83, 224
HaeIII	GGCC	3 cut(s)	101, 390, 394
HapII	CCGG	4 cut(s)	59, 102, 108, 391
HgaI	GACGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	3 cut(s)	33, 170, 197
HpaII	CCGG	4 cut(s)	59, 102, 108, 391
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188III	TCNNGA	2 cut(s)	201, 367
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	122, 246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	72, 260
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	16
KroI	GCCGGC	3 cut(s)	58, 101, 390
KroNI	GCCGGC	3 cut(s)	60, 103, 392
LpnPI	CCDG	6 cut(s)	72, 115, 121, 163, 186, 404
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	90, 252
MaeIII	GTNAC	1 cut(s)	364
MboII	GAAGA	4 cut(s)	40, 59, 293, 393
MluCI	AATT	3 cut(s)	6, 95, 360
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	2 cut(s)	56, 81
MroNI	GCCGGC	3 cut(s)	58, 101, 390
MseI	TTAA	2 cut(s)	9, 412
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	4 cut(s)	59, 102, 108, 391
MwoI	GCNNNNNNNGC	1 cut(s)	82
NaeI	GCCGGC	3 cut(s)	60, 103, 392
NgoMIV	GCCGGC	3 cut(s)	58, 101, 390
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	364
OliI	CACNNNNGTG	1 cut(s)	110
PdiI	GCCGGC	3 cut(s)	60, 103, 392
PfeI	GAWTC	2 cut(s)	170, 197
PkrI	GCNGC	2 cut(s)	84, 225
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	106
RigI	GGCCGGCC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	9, 412
SatI	GCNGC	2 cut(s)	83, 224
SchI	GAGTC	1 cut(s)	42
SetI	ASST	2 cut(s)	91, 144
SfaNI	GCATC	1 cut(s)	256
SgrAI	CRCCGGYG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	6, 95, 360
SsiI	CCGC	2 cut(s)	83, 378
SspMI	CTAG	2 cut(s)	90, 252
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	146
TasI	AATT	3 cut(s)	6, 95, 360
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	170, 197
Tru1I	TTAA	2 cut(s)	9, 412
Tru9I	TTAA	2 cut(s)	9, 412
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XmaJI	CCTAGG	1 cut(s)	89
XspI	CTAG	2 cut(s)	90, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.