Rroxscaffold_4G00316700

Glycogen synthase kinase-3 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
41665252 .. 41669466
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316700.1

Sequence Viewer

Length: 198 bp
ATGGCTCTTTTTGTAACTCAAGCAATTCAAAAAATAAGGGATGCAGTTCATGACACGTATACACTATGCCCAGCTGAAATGGAAGCAACTCTTGTAGATGGTAATGGAACAGAAACGGGTCATATAATTGTCACGACTATTGGTGGAAGAAATGGCCGGCCAAAGCAGCACCCAAAAAAAAAAGCACGGGCAGACTAG

Protein Analysis

65

Amino Acids

7.07

Weight (kDa)

8.98

Isoelectric Point (pI)

15.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017873)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 59
AcoI YGGCCR 2 cut(s) 154, 158
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AoxI GGCC 2 cut(s) 154, 158
ApeKI GCWGC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 92
BfaI CTAG 1 cut(s) 196
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
BmsI GCATC 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 156
BseGI GGATG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 70
BshFI GGCC 2 cut(s) 156, 160
BsiSI CCGG 1 cut(s) 157
BsnI GGCC 2 cut(s) 156, 160
BspANI GGCC 2 cut(s) 156, 160
BspHI TCATGA 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 156
BssNAI GTATAC 1 cut(s) 60
Bst1107I GTATAC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 178
BstZ17I GTATAC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 156, 160
BtsCI GGATG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 156
CviAII CATG 1 cut(s) 50
CviJI RGCY 4 cut(s) 5, 74, 156, 160
CviKI_1 RGCY 4 cut(s) 5, 74, 156, 160
EaeI YGGCCR 2 cut(s) 154, 158
FaeI CATG 1 cut(s) 53
FaiI YATR 5 cut(s) 51, 60, 67, 123, 125
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 1 cut(s) 49
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 167
FokI GGATG 1 cut(s) 53
FseI GGCCGGCC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 196
GluI GCNGC 1 cut(s) 167
GsaI CCCAGC 1 cut(s) 74
HaeIII GGCC 2 cut(s) 156, 160
HapII CCGG 1 cut(s) 157
Hin1II CATG 1 cut(s) 53
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 50, 133
Hpy8I GTNNAC 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 53
KroI GCCGGC 1 cut(s) 156
KroNI GCCGGC 1 cut(s) 158
LpnPI CCDG 2 cut(s) 84, 170
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 196
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 2 cut(s) 13, 130
MboII GAAGA 1 cut(s) 159
MluCI AATT 2 cut(s) 24, 126
MroNI GCCGGC 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 166
NaeI GCCGGC 1 cut(s) 158
NgoMIV GCCGGC 1 cut(s) 156
NlaIII CATG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 130
PagI TCATGA 1 cut(s) 49
PdiI GCCGGC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 168
Ppu21I YACGTR 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 74
RigI GGCCGGCC 1 cut(s) 160
SatI GCNGC 1 cut(s) 167
SetI ASST 2 cut(s) 59, 76
SfaNI GCATC 1 cut(s) 31
SgeI CNNG 8 cut(s) 32, 62, 67, 83, 104, 129, 145, 169
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 2 cut(s) 24, 126
SspMI CTAG 1 cut(s) 196
TaiI ACGT 1 cut(s) 59
TasI AATT 2 cut(s) 24, 126
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 59
XspI CTAG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.