Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017873

Physical Location & Seq

Genomic Coordinates Reverse (-)

32105355 .. 32135360

Gene Structure 30006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG277600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCCTCTGTAAGTGTGGCTCCTGCATCTGGATTAAGAGATCGCGTTGGAAATACAATTGCTGTCGATAGTTTGCCCAGTGAGATGAATGACATGAAAATTAGGGATGACAAGGAAATGGAAGCAACTGTTGTTGATGGTAATGGAACAGAAACGGGTCATATAATTGTCACAACTATTGGTGGAAGAAATGGCCAGCCAAAACAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGACATGGATCTTTTGGATTGGTTTTTCAGGCCAAGTGTTTAGAAACTGGAGAAACTGTTGCTATTAAAAAGGTTCTTCAAGACAAAAGGTACAAGAATCGGGAGTTGCAAACCATGCGTCTTCTAGACCACCCCAACATTGTGTCTCTTAAACATTGTTTCTTTTCCACAACTGAAAAAGATGAGCTATACCTGAACCTTGTGCTTGAGTATGTCCCTGAGACTGTTCATAGAGTGATCAAACATTATAGTAAGATGAGCCAGAGGATGCCGCTGATATACGTTAAACTCTATTCTTACCAGGTATGCTTTTGTACAGTTTTAAAGTATTTATATCTCATATCCGTCTCAAAAAAAGAAAAAGAAAAAAAAAAGGGCAGCCAATTCCTCTATGGGTATTGGTCGGTTTCCACCCCCTTAAAACCATTAAAAGAATTGCAGCATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

228

Amino Acids

25.92

Weight (kDa)

9.19

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 191	2.2e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 154	3.8e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017873)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g27740
rosa_chinensis	RchiOBHm_Chr1g0334701
rosa_multiflora	Rmu_sc0006031.1_g000025
rosa_roxburghii	Rroxscaffold_3G00236040 Rroxscaffold_4G00316700
rosa_samantha	Rh1AG140200 Rh1BG107300 Rh1CG132100 Rh1DG144100 Rh3AG277600 Rh3BG312900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	193
AfaI	GTAC	2 cut(s)	329, 553
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	2 cut(s)	216, 424
AluI	AGCT	2 cut(s)	216, 424
Alw26I	GTCTC	3 cut(s)	387, 452, 589
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	3 cut(s)	3, 193, 267
ApeKI	GCWGC	2 cut(s)	615, 676
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
BalI	TGGCCA	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	627
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	539
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	3 cut(s)	387, 452, 589
BfaI	CTAG	1 cut(s)	362
BisI	GCNGC	3 cut(s)	509, 616, 677
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	3 cut(s)	510, 617, 678
Bme1390I	CCNGG	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	539
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	35, 495
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	78, 289
BseBI	CCWGG	1 cut(s)	539
BseGI	GGATG	2 cut(s)	112, 510
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	216, 447
BseNI	ACTGG	2 cut(s)	78, 289
BseXI	GCAGC	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	5, 195, 269
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	3 cut(s)	387, 452, 589
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	5, 195, 269
Bsp1407I	TGTACA	1 cut(s)	551
Bsp143I	GATC	3 cut(s)	40, 245, 474
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	3 cut(s)	5, 195, 269
BspCNI	CTCAG	2 cut(s)	217, 448
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	551
BsrI	ACTGG	2 cut(s)	78, 289
BssMI	GATC	3 cut(s)	40, 245, 474
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	4 cut(s)	130, 295, 463, 556
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	225, 456
BstF5I	GGATG	2 cut(s)	112, 510
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	43, 248, 477
BstMAI	GTCTC	3 cut(s)	387, 452, 589
BstMBI	GATC	3 cut(s)	40, 245, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	627
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	5, 195, 269
BtsCI	GGATG	2 cut(s)	112, 510
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	197
CseI	GACGC	1 cut(s)	344
CsiI	ACCWGGT	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	328, 552
CviAII	CATG	3 cut(s)	94, 242, 352
CviQI	GTAC	2 cut(s)	328, 552
DdeI	CTNAG	2 cut(s)	225, 456
DpnI	GATC	3 cut(s)	42, 247, 476
DpnII	GATC	3 cut(s)	40, 245, 474
DraI	TTTAAA	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	3 cut(s)	97, 245, 355
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	3 cut(s)	93, 241, 351
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	3 cut(s)	509, 616, 677
FokI	GGATG	2 cut(s)	119, 517
Fsp4HI	GCNGC	3 cut(s)	509, 616, 677
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	3 cut(s)	509, 616, 677
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	3 cut(s)	5, 195, 269
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	97, 245, 355
HinfI	GANTC	1 cut(s)	334
Hpy188III	TCNNGA	4 cut(s)	30, 317, 338, 362
HpyCH4III	ACNGT	4 cut(s)	130, 295, 463, 556
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	26, 346, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	225, 456
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	3 cut(s)	97, 245, 355
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	40, 245, 474
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	627
LweI	GCATC	2 cut(s)	35, 495
MabI	ACCWGGT	1 cut(s)	537
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	42, 247, 476
MboI	GATC	3 cut(s)	40, 245, 474
MboII	GAAGA	3 cut(s)	198, 305, 350
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	245
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	5 cut(s)	57, 99, 165, 620, 671
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	2 cut(s)	28, 217
MnlI	CCTC	3 cut(s)	16, 495, 635
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	8 cut(s)	35, 303, 387, 522, 560, 656, 665, 685
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	3 cut(s)	40, 245, 474
NlaIII	CATG	3 cut(s)	97, 245, 355
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	510, 617, 678
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	2 cut(s)	329, 553
RsaNI	GTAC	2 cut(s)	328, 552
SaqAI	TTAA	8 cut(s)	35, 303, 387, 522, 560, 656, 665, 685
SatI	GCNGC	3 cut(s)	509, 616, 677
Sau3AI	GATC	3 cut(s)	40, 245, 474
ScrFI	CCNGG	1 cut(s)	539
SetI	ASST	8 cut(s)	218, 312, 329, 426, 432, 438, 522, 543
SexAI	ACCWGGT	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	35, 495
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	5 cut(s)	57, 99, 165, 620, 671
SsiI	CCGC	1 cut(s)	509
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	537
TaaI	ACNGT	4 cut(s)	130, 295, 463, 556
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	66
TasI	AATT	5 cut(s)	57, 99, 165, 620, 671
TatI	WGTACW	1 cut(s)	551
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	8 cut(s)	35, 303, 387, 522, 560, 656, 665, 685
Tru9I	TTAA	8 cut(s)	35, 303, 387, 522, 560, 656, 665, 685
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	615, 676
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	101, 110, 455
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	85
XbaI	TCTAGA	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.