Rh1DG144100
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
30386660 .. 30387008
349 bp
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UTR
Exon/CDS
Intron
Rh1DG144100.1

Sequence Viewer

Length: 219 bp
ATGGCCTCCGTAAGTGTGGCTCCTTTATCTGGATTAAGGTACCACAGTGGAATTACAGTTTCTATCAATAGTTTGCCCAGTGAGATGAATGACATGAAAATTAAGGATGACAAGGAAATGGAAGCAACTGTTGTAGATGGTAAAGGAACAGAAATGGGTCATATAATTGTCACGACTATTGGCGGAAGAAATGGCCGGCCAAAGCAGTTTACATTTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

7.75

Weight (kDa)

6.71

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017873)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 39
AciI CCGC 1 cut(s) 183
AcoI YGGCCR 2 cut(s) 193, 197
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 29
AoxI GGCC 3 cut(s) 3, 193, 197
Asp718I GGTACC 1 cut(s) 39
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BanI GGYRCC 1 cut(s) 39
BccI CCATC 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 21, 41
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 78
BshFI GGCC 3 cut(s) 5, 195, 199
BshNI GGYRCC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 3 cut(s) 5, 195, 199
BspACI CCGC 1 cut(s) 183
BspANI GGCC 3 cut(s) 5, 195, 199
BspLI GGNNCC 2 cut(s) 21, 41
BspT107I GGYRCC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 47, 58, 130
BstC8I GCNNGC 1 cut(s) 197
BstF5I GGATG 1 cut(s) 112
BsuRI GGCC 3 cut(s) 5, 195, 199
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 52, 85
Cac8I GCNNGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 195
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 94
CviJI RGCY 4 cut(s) 5, 20, 195, 199
CviKI_1 RGCY 4 cut(s) 5, 20, 195, 199
CviQI GTAC 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 193, 197
EciI GGCGGA 1 cut(s) 198
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 95, 162, 164
FatI CATG 1 cut(s) 93
FokI GGATG 1 cut(s) 119
FseI GGCCGGCC 1 cut(s) 199
HaeIII GGCC 3 cut(s) 5, 195, 199
HapII CCGG 1 cut(s) 196
Hin1II CATG 1 cut(s) 97
HpaII CCGG 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 30, 172
Hpy8I GTNNAC 1 cut(s) 210
HpyCH4III ACNGT 3 cut(s) 47, 58, 130
Hsp92II CATG 1 cut(s) 97
KpnI GGTACC 1 cut(s) 43
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 15, 91, 209
MaeIII GTNAC 1 cut(s) 169
MboII GAAGA 1 cut(s) 198
MluCI AATT 3 cut(s) 51, 99, 165
MnlI CCTC 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 195
MseI TTAA 3 cut(s) 35, 102, 217
MspI CCGG 1 cut(s) 196
NaeI GCCGGC 1 cut(s) 197
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 2 cut(s) 21, 41
NmuCI GTSAC 1 cut(s) 169
PdiI GCCGGC 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 21, 41
RigI GGCCGGCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 3 cut(s) 35, 102, 217
SetI ASST 1 cut(s) 41
SgeI CNNG 6 cut(s) 42, 90, 106, 124, 184, 208
Sse9I AATT 3 cut(s) 51, 99, 165
SsiI CCGC 1 cut(s) 183
TaaI ACNGT 3 cut(s) 47, 58, 130
TasI AATT 3 cut(s) 51, 99, 165
Tru1I TTAA 3 cut(s) 35, 102, 217
Tru9I TTAA 3 cut(s) 35, 102, 217
TscAI CASTG 2 cut(s) 52, 85
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 101, 110
TspRI CASTG 2 cut(s) 52, 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.