Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017873

Physical Location & Seq

Genomic Coordinates Reverse (-)

31800541 .. 31804754

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG312900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCCTCTGTAAGTGTGGCTCCTGCATCTGGATTAAGAGATCGCGTTGGAAATACAGTTGCTGTCGATAGTTTGCCCAGTGAGATGAATGACATGAAAATTAGGGATGACAAGGAAATGGAAGCAACTGTTGTTGATGGTAATGGAACAGAAACGGGTCATATAATTGTCACAACTATTGGTGGAAGAAATGGCCAGCCAAAACAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGACATGGATCTTTTGGATTGGTTTTTCAGGCCAAGTGTTTAGAAACTGGAGAAACTGTTGCTATTAAAAAGGTTCTTCAAGACAAAAGGTACAAGAATCGGGAGTTGCAAACCATGCGTCTTCTAGACCACCCCAACATTGTGTCTCTTAAACATTGTTTCTTTTCCACAACTGAAAAAGATGAGCTATACCTGAACCTCGTGCTTGAGTATGTCCCTGAGACTGTCCATAGAGTGATCAAACATTATAGTAAGATGAGCCAGAGGATGCCGCTGATATATGTTAAACTCTATTCTTACCAGATTTGTAGAGCACTTGCTTACATTCACAACAGTATTGGAGTGTGCCACAGGGACATAAAGCCTCAGAATTTGTTGGTCAATCCGCATACTCACCAGCTTAAAATCTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAGGGGGAACCCAACATATCTTACATCTGTTCAAGATACTATCGAGCACCTGAACTTATATTTGGTGCAACAGAGTATACCACAGCCATTGACATCTGGTCTGCTGGATGTGTTCTAGCTGAACTTCTACTTGGACAGCCTCTATTTCCTGGAGAAAGTGGAGTAGACCAGCTTGTTGAAATCATTAAGGTTTTAGGCACCCCAACCAGAGAGGAAATAAAATGCATGAACCCTAACTACACAGAATTTAAATTCCCTCAAATTAAAGCGCATCCATGGCACAAGGTACTTGGAATATTACATATGTTTTACTTGGTCCCAAGAAAATTGCATGTTAATATTCTTTTTTTATATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

344

Amino Acids

38.96

Weight (kDa)

8.64

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 295	1.5e-55	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 273	2.2e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017873)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g27740
rosa_chinensis	RchiOBHm_Chr1g0334701
rosa_multiflora	Rmu_sc0006031.1_g000025
rosa_roxburghii	Rroxscaffold_3G00236040 Rroxscaffold_4G00316700
rosa_samantha	Rh1AG140200 Rh1BG107300 Rh1CG132100 Rh1DG144100 Rh3AG277600 Rh3BG312900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	872
AccI	GTMKAC	2 cut(s)	752, 840
AccII	CGCG	1 cut(s)	45
AciI	CCGC	2 cut(s)	509, 623
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	3 cut(s)	607, 920, 926
AfaI	GTAC	2 cut(s)	329, 963
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	317, 708, 854
AhdI	GACNNNNNGTC	1 cut(s)	772
AjnI	CCWGG	1 cut(s)	823
AjuI	GAANNNNNNNTTGG	4 cut(s)	720, 752, 789, 821
AluBI	AGCT	5 cut(s)	216, 424, 637, 794, 847
AluI	AGCT	5 cut(s)	216, 424, 637, 794, 847
Alw21I	GWGCWC	2 cut(s)	553, 724
Alw26I	GTCTC	2 cut(s)	387, 452
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	3 cut(s)	3, 193, 267
ApoI	RAATTY	3 cut(s)	607, 920, 926
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	1 cut(s)	991
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	991
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	872
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	553, 724
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	825
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	387, 452
BfaI	CTAG	2 cut(s)	362, 791
BisI	GCNGC	1 cut(s)	509
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	1 cut(s)	991
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	991
BmiI	GGNNCC	4 cut(s)	21, 684, 874, 993
BmrFI	CCNGG	1 cut(s)	825
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	3 cut(s)	35, 495, 955
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	2 cut(s)	306, 846
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	950
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	78, 289
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	1 cut(s)	950
BseGI	GGATG	4 cut(s)	112, 510, 788, 946
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	216, 447, 617
BseNI	ACTGG	2 cut(s)	78, 289
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	5, 195, 269
BshNI	GGYRCC	1 cut(s)	872
BsiHKAI	GWGCWC	2 cut(s)	553, 724
BslFI	GGGAC	3 cut(s)	437, 605, 977
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	387, 452
BsmFI	GGGAC	3 cut(s)	437, 605, 977
BsnI	GGCC	3 cut(s)	5, 195, 269
Bsp1286I	GDGCHC	2 cut(s)	553, 724
Bsp143I	GATC	3 cut(s)	40, 245, 474
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	2 cut(s)	509, 623
BspANI	GGCC	3 cut(s)	5, 195, 269
BspCNI	CTCAG	3 cut(s)	217, 448, 616
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	21, 684, 874, 993
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	872
BsrI	ACTGG	2 cut(s)	78, 289
BssECI	CCNNGG	1 cut(s)	950
BssMI	GATC	3 cut(s)	40, 245, 474
BssNAI	GTATAC	1 cut(s)	753
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	950
Bst1107I	GTATAC	1 cut(s)	753
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	5 cut(s)	58, 130, 295, 463, 572
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	225, 456, 603
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	4 cut(s)	112, 510, 788, 946
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	3 cut(s)	43, 248, 477
BstMAI	GTCTC	2 cut(s)	387, 452
BstMBI	GATC	3 cut(s)	40, 245, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 952
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	1010
BstSCI	CCNGG	1 cut(s)	823
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BstZ17I	GTATAC	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	5, 195, 269
BtgI	CCRYGG	1 cut(s)	950
BtsCI	GGATG	4 cut(s)	112, 510, 788, 946
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	946
Cfr13I	GGNCC	1 cut(s)	991
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	328, 962
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviAII	CATG	6 cut(s)	94, 242, 352, 901, 951, 1007
CviQI	GTAC	2 cut(s)	328, 962
DdeI	CTNAG	3 cut(s)	225, 456, 603
DpnI	GATC	3 cut(s)	42, 247, 476
DpnII	GATC	3 cut(s)	40, 245, 474
DraI	TTTAAA	1 cut(s)	925
DriI	GACNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	772
Eco130I	CCWWGG	1 cut(s)	950
Eco47I	GGWCC	1 cut(s)	991
EcoRII	CCWGG	1 cut(s)	823
EcoT14I	CCWWGG	1 cut(s)	950
EcoT22I	ATGCAT	1 cut(s)	902
ErhI	CCWWGG	1 cut(s)	950
FaeI	CATG	6 cut(s)	97, 245, 355, 904, 954, 1010
FaqI	GGGAC	3 cut(s)	437, 605, 977
FatI	CATG	6 cut(s)	93, 241, 351, 900, 950, 1006
FauNDI	CATATG	1 cut(s)	978
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	2 cut(s)	752, 840
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	4 cut(s)	119, 517, 795, 933
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	2 cut(s)	362, 791
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	1 cut(s)	509
GsuI	CTGGAG	2 cut(s)	306, 846
HaeIII	GGCC	3 cut(s)	5, 195, 269
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	6 cut(s)	97, 245, 355, 904, 954, 1010
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	753, 841
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	5 cut(s)	30, 317, 338, 362, 708
Hpy8I	GTNNAC	2 cut(s)	753, 841
HpyCH4III	ACNGT	5 cut(s)	58, 130, 295, 463, 572
HpyCH4V	TGCA	6 cut(s)	26, 346, 662, 743, 900, 1006
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 952
HpyF3I	CTNAG	3 cut(s)	225, 456, 603
Hsp92II	CATG	6 cut(s)	97, 245, 355, 904, 954, 1010
HspAI	GCGC	1 cut(s)	944
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	40, 245, 474
LmnI	GCTCC	1 cut(s)	25
LweI	GCATC	3 cut(s)	35, 495, 955
MaeI	CTAG	2 cut(s)	362, 791
MaeIII	GTNAC	2 cut(s)	169, 647
MalI	GATC	3 cut(s)	42, 247, 476
MboI	GATC	3 cut(s)	40, 245, 474
MboII	GAAGA	3 cut(s)	198, 305, 350
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	2 cut(s)	553, 724
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	7 cut(s)	99, 165, 607, 920, 926, 936, 1001
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	2 cut(s)	28, 217
MnlI	CCTC	7 cut(s)	16, 446, 495, 612, 825, 880, 942
Mox20I	TGGCCA	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	902
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	9 cut(s)	35, 303, 387, 522, 639, 861, 924, 939, 1011
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	825
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	352, 952
NcoI	CCATGG	1 cut(s)	950
NdeI	CATATG	1 cut(s)	978
NdeII	GATC	3 cut(s)	40, 245, 474
NlaIII	CATG	6 cut(s)	97, 245, 355, 904, 954, 1010
NlaIV	GGNNCC	4 cut(s)	21, 684, 874, 993
NmuCI	GTSAC	2 cut(s)	169, 647
NsiI	ATGCAT	1 cut(s)	902
NspI	RCATGY	1 cut(s)	1010
PfeI	GAWTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	4 cut(s)	21, 684, 874, 993
PspPI	GGNCC	1 cut(s)	991
PsrI	GAACNNNNNNTAC	2 cut(s)	896, 928
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	2 cut(s)	329, 963
RsaNI	GTAC	2 cut(s)	328, 962
SaqAI	TTAA	9 cut(s)	35, 303, 387, 522, 639, 861, 924, 939, 1011
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	3 cut(s)	40, 245, 474
Sau96I	GGNCC	1 cut(s)	991
ScrFI	CCNGG	1 cut(s)	825
SduI	GDGCHC	2 cut(s)	553, 724
SfaNI	GCATC	3 cut(s)	35, 495, 955
SinI	GGWCC	1 cut(s)	991
SmiI	ATTTAAAT	1 cut(s)	925
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	7 cut(s)	99, 165, 607, 920, 926, 936, 1001
SsiI	CCGC	2 cut(s)	509, 623
SspI	AATATT	2 cut(s)	972, 1015
SspMI	CTAG	2 cut(s)	362, 791
StyD4I	CCNGG	1 cut(s)	823
StyI	CCWWGG	1 cut(s)	950
SwaI	ATTTAAAT	1 cut(s)	925
TaaI	ACNGT	5 cut(s)	58, 130, 295, 463, 572
TaqI	TCGA	2 cut(s)	66, 718
TasI	AATT	7 cut(s)	99, 165, 607, 920, 926, 936, 1001
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	9 cut(s)	35, 303, 387, 522, 639, 861, 924, 939, 1011
Tru9I	TTAA	9 cut(s)	35, 303, 387, 522, 639, 861, 924, 939, 1011
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	169, 647
Tsp45I	GTSAC	2 cut(s)	169, 647
TspDTI	ATGAA	3 cut(s)	101, 110, 917
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	991
XapI	RAATTY	3 cut(s)	607, 920, 926
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	1010
XmiI	GTMKAC	2 cut(s)	752, 840
XspI	CTAG	2 cut(s)	362, 791
Zsp2I	ATGCAT	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.